Wall clock time and date at job start Tue Mar 31 2020 19:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46677 * 2 1 4 4 C 1.50696 * 109.46694 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00236 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00123 * 180.02562 * 4 3 2 7 7 C 1.47431 * 125.64579 * 0.03945 * 6 4 3 8 8 C 1.55392 * 104.87127 * 204.10006 * 7 6 4 9 9 C 1.55157 * 101.36576 * 323.01456 * 8 7 6 10 10 C 1.47019 * 125.65277 * 180.02562 * 6 4 3 11 11 H 1.09001 * 109.88251 * 59.55144 * 10 6 4 12 12 C 1.50702 * 110.01247 * 298.46637 * 10 6 4 13 13 O 1.21279 * 119.99637 * 0.65559 * 12 10 6 14 14 N 1.34774 * 120.00367 * 180.66318 * 12 10 6 15 15 C 1.46499 * 120.00046 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.47086 * 179.97438 * 15 14 12 17 17 H 1.09005 * 112.84589 * 314.66144 * 16 15 14 18 18 C 1.53771 * 113.61220 * 85.85897 * 16 15 14 19 19 C 1.53956 * 87.01643 * 139.95360 * 18 16 15 20 20 H 1.09005 * 113.74384 * 220.05344 * 19 18 16 21 21 N 1.46499 * 113.54065 * 89.18728 * 19 18 16 22 22 C 1.36939 * 120.00125 * 107.50029 * 21 19 18 23 23 H 1.07997 * 119.99950 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99953 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00209 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99849 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46995 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47251 * 120.00384 * 26 24 22 29 29 H 1.48506 * 109.46777 * 239.99852 * 26 24 22 30 30 C 1.53778 * 87.11285 * 334.63536 * 19 18 16 31 31 H 1.09005 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46907 * 299.99687 * 1 2 3 33 33 H 1.08994 * 109.47541 * 60.00101 * 1 2 3 34 34 H 1.09006 * 109.46660 * 240.00406 * 2 1 3 35 35 H 1.08997 * 109.47149 * 120.00764 * 2 1 3 36 36 H 1.08998 * 109.47196 * 60.00491 * 3 2 1 37 37 H 1.08989 * 109.47713 * 300.00012 * 3 2 1 38 38 H 1.08999 * 110.36190 * 322.93058 * 7 6 4 39 39 H 1.08999 * 110.36356 * 85.25579 * 7 6 4 40 40 H 1.09004 * 111.18705 * 204.97719 * 8 7 6 41 41 H 1.09001 * 111.02055 * 80.98222 * 8 7 6 42 42 H 1.09002 * 110.72219 * 277.04408 * 9 8 7 43 43 H 1.09003 * 110.71618 * 153.95021 * 9 8 7 44 44 H 0.97002 * 120.00088 * 359.97438 * 14 12 10 45 45 H 1.09005 * 109.46982 * 299.99568 * 15 14 12 46 46 H 1.09000 * 109.47595 * 59.99851 * 15 14 12 47 47 H 1.08998 * 113.61810 * 254.52872 * 18 16 15 48 48 H 1.08996 * 113.61835 * 25.44108 * 18 16 15 49 49 H 0.96998 * 119.99960 * 287.50663 * 21 19 18 50 50 H 0.97000 * 120.00137 * 180.02562 * 25 24 22 51 51 H 1.09001 * 113.61440 * 270.81385 * 30 19 18 52 52 H 1.09003 * 113.68975 * 139.91917 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3923 -0.0006 6 7 4.2208 2.6097 -0.0002 7 6 3.6129 3.9529 0.0017 8 6 4.6968 4.8821 -0.6118 9 6 5.9948 4.2659 -0.0264 10 6 5.6839 2.7545 -0.0013 11 1 6.1032 2.2748 -0.8857 12 6 6.2646 2.1326 1.2426 13 8 5.5343 1.6040 2.0538 14 7 7.5953 2.1641 1.4535 15 6 8.1597 1.5600 2.6630 16 6 9.6801 1.7314 2.6569 17 1 10.1291 1.4927 1.6927 18 6 10.1509 3.0740 3.2402 19 6 11.2949 2.2904 3.9092 20 1 11.5168 2.6188 4.9246 21 7 12.4930 2.1766 3.0737 22 6 13.6146 2.8987 3.3831 23 1 13.6162 3.5517 4.2433 24 6 14.7496 2.7913 2.5912 25 7 14.7475 1.9958 1.5426 26 14 16.2799 3.7757 3.0137 27 1 16.0256 4.5881 4.2305 28 1 17.4117 2.8478 3.2651 29 1 16.6188 4.6743 1.8810 30 6 10.3810 1.0552 3.8470 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9564 -0.8899 38 1 2.7131 3.9627 -0.6134 39 1 3.3805 4.2626 1.0206 40 1 4.5679 5.9117 -0.2779 41 1 4.6923 4.8226 -1.7002 42 1 6.1785 4.6390 0.9812 43 1 6.8465 4.4735 -0.6742 44 1 8.1795 2.5867 0.8046 45 1 7.7420 2.0499 3.5426 46 1 7.9143 0.4983 2.6874 47 1 10.4896 3.7835 2.4852 48 1 9.4489 3.5122 3.9495 49 1 12.4917 1.5899 2.3013 50 1 15.5407 1.9205 0.9894 51 1 9.7419 0.9405 4.7224 52 1 10.9039 0.1365 3.5812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086557180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:56 Heat of formation + Delta-G solvation = -74.613338 kcal Electronic energy + Delta-G solvation = -29388.919483 eV Core-core repulsion = 25387.751888 eV Total energy + Delta-G solvation = -4001.167595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.76042 -40.45272 -39.67040 -38.21827 -36.02869 -35.31657 -34.98494 -32.79188 -32.11059 -30.91834 -28.86163 -28.24912 -26.45848 -25.76116 -24.93708 -23.35336 -22.67869 -22.58703 -21.43740 -20.29942 -19.71198 -19.31270 -18.53167 -18.18538 -17.22079 -16.85590 -16.73557 -16.60563 -16.22114 -15.93622 -15.75238 -15.42209 -15.00375 -14.92615 -14.65988 -14.47600 -14.27716 -14.13498 -13.83948 -13.73895 -13.35266 -13.26350 -12.99011 -12.93239 -12.91449 -12.75910 -12.65440 -12.60389 -12.23286 -12.13590 -12.05500 -11.96287 -11.80870 -11.66050 -11.56116 -11.49190 -11.05719 -10.92713 -10.88600 -10.77682 -10.10206 -9.70392 -9.00535 -7.95497 -5.24050 1.48196 1.48805 1.54906 1.58912 1.58989 1.90677 2.31919 2.55683 3.37128 3.39939 3.49012 3.68435 3.75357 3.76934 3.79411 3.90288 3.96862 4.05634 4.10951 4.13657 4.20520 4.29738 4.36903 4.49361 4.53431 4.64413 4.68345 4.68910 4.72655 4.76952 4.82450 4.87226 4.90492 4.91228 4.96208 5.07377 5.09121 5.20268 5.23275 5.24426 5.27249 5.31363 5.33258 5.43607 5.48009 5.53496 5.64503 6.27930 6.44712 6.54512 7.14900 7.24964 7.32996 8.09658 8.32245 9.27953 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.001951 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.372475 B =14347.998518 C =14979.458529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.123 4.123 4 C 0.519 3.481 5 O -0.584 6.584 6 N -0.609 5.609 7 C 0.090 3.910 8 C -0.119 4.119 9 C -0.120 4.120 10 C 0.114 3.886 11 H 0.099 0.901 12 C 0.499 3.501 13 O -0.574 6.574 14 N -0.716 5.716 15 C 0.144 3.856 16 C -0.101 4.101 17 H 0.080 0.920 18 C -0.147 4.147 19 C 0.145 3.855 20 H 0.061 0.939 21 N -0.720 5.720 22 C -0.241 4.241 23 H 0.078 0.922 24 C -0.076 4.076 25 N -0.969 5.969 26 Si 0.973 3.027 27 H -0.265 1.265 28 H -0.296 1.296 29 H -0.293 1.293 30 C -0.138 4.138 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.040 0.960 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.412 0.588 45 H 0.067 0.933 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.091 0.909 49 H 0.374 0.626 50 H 0.251 0.749 51 H 0.102 0.898 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.105 7.984 -6.224 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.163 4.163 4 C 0.310 3.690 5 O -0.463 6.463 6 N -0.342 5.342 7 C -0.031 4.031 8 C -0.157 4.157 9 C -0.158 4.158 10 C 0.006 3.994 11 H 0.117 0.883 12 C 0.285 3.715 13 O -0.453 6.453 14 N -0.368 5.368 15 C 0.020 3.980 16 C -0.120 4.120 17 H 0.099 0.901 18 C -0.188 4.188 19 C 0.035 3.965 20 H 0.079 0.921 21 N -0.358 5.358 22 C -0.373 4.373 23 H 0.096 0.904 24 C -0.268 4.268 25 N -0.620 5.620 26 Si 0.802 3.198 27 H -0.190 1.190 28 H -0.223 1.223 29 H -0.220 1.220 30 C -0.177 4.177 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.131 0.869 44 H 0.248 0.752 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.110 0.890 49 H 0.206 0.794 50 H 0.059 0.941 51 H 0.121 0.879 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -30.236 7.098 -5.524 31.545 hybrid contribution 1.744 -0.271 -0.296 1.789 sum -28.492 6.827 -5.820 29.871 Atomic orbital electron populations 1.21736 0.93034 1.02438 1.02935 1.21267 0.97182 0.94946 1.01528 1.21713 0.88228 1.00066 1.06246 1.21231 0.91707 0.81726 0.74316 1.90688 1.71691 1.32694 1.51278 1.48470 1.05198 1.07396 1.73181 1.22785 0.98381 0.79711 1.02203 1.22907 0.91303 0.99756 1.01708 1.22722 1.01224 0.88200 1.03691 1.21647 0.83209 0.99710 0.94851 0.88312 1.21478 0.82388 0.79076 0.88598 1.90665 1.60490 1.45837 1.48287 1.45930 1.06990 1.59261 1.24610 1.21219 0.92280 0.97202 0.87292 1.22479 0.92364 0.98346 0.98824 0.90149 1.23690 0.99009 0.95711 1.00352 1.21410 0.85741 0.95417 0.93925 0.92051 1.42313 1.09800 1.51990 1.31660 1.19721 0.91086 1.18069 1.08422 0.90420 1.25556 1.01338 1.01763 0.98113 1.69823 1.29611 1.43223 1.19358 0.85075 0.79460 0.77744 0.77482 1.18956 1.22312 1.22032 1.23365 0.98164 0.97822 0.98372 0.92443 0.91820 0.90960 0.92781 0.94149 0.87491 0.85748 0.87242 0.91089 0.86932 0.88798 0.90376 0.86874 0.75196 0.91516 0.93407 0.92774 0.89012 0.79423 0.94056 0.87938 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.11 -1.99 5.22 30.60 0.16 -1.83 16 3 C -0.12 -1.86 4.71 29.85 0.14 -1.72 16 4 C 0.52 12.99 7.02 87.66 0.62 13.61 16 5 O -0.58 -21.05 15.24 10.76 0.16 -20.89 16 6 N -0.61 -11.95 2.85 -791.22 -2.25 -14.20 16 7 C 0.09 0.85 6.70 87.02 0.58 1.43 16 8 C -0.12 -0.69 7.12 32.16 0.23 -0.46 16 9 C -0.12 -1.33 6.36 31.78 0.20 -1.13 16 10 C 0.11 2.29 3.26 44.60 0.15 2.44 16 11 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 12 C 0.50 14.15 6.68 87.66 0.59 14.73 16 13 O -0.57 -21.57 15.04 10.76 0.16 -21.41 16 14 N -0.72 -18.10 5.48 -463.05 -2.54 -20.64 16 15 C 0.14 4.03 5.50 86.38 0.47 4.51 16 16 C -0.10 -3.02 3.62 -10.27 -0.04 -3.05 16 17 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 18 C -0.15 -4.62 7.44 31.18 0.23 -4.38 16 19 C 0.15 5.55 4.57 45.58 0.21 5.76 16 20 H 0.06 2.35 8.10 -2.38 -0.02 2.33 16 21 N -0.72 -35.57 5.31 -320.17 -1.70 -37.27 16 22 C -0.24 -13.18 9.97 84.03 0.84 -12.34 16 23 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 25 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 26 Si 0.97 45.56 29.55 68.60 2.03 47.58 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 30 C -0.14 -4.42 7.39 31.12 0.23 -4.19 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 35 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.12 1.00 7.85 -2.39 -0.02 0.98 16 38 H 0.11 0.41 7.48 -2.39 -0.02 0.39 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.09 0.36 8.14 -2.39 -0.02 0.35 16 42 H 0.08 0.99 7.85 -2.39 -0.02 0.97 16 43 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.41 8.54 8.44 -92.71 -0.78 7.76 16 45 H 0.07 1.87 7.88 -2.38 -0.02 1.85 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.09 2.46 7.92 -2.39 -0.02 2.44 16 49 H 0.37 19.89 7.90 -92.71 -0.73 19.16 16 50 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 51 H 0.10 2.77 8.10 -2.39 -0.02 2.75 16 52 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -81.47 418.50 1.32 -80.15 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -0.61 Total: 36.42 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 5.79 Total: 8.69 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -6.21 Total: -130.55 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: 0.33 Total: -42.30 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -81.47 1.32 -80.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086557180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.539 kcal (2) G-P(sol) polarization free energy of solvation -81.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds