Wall clock time and date at job start Tue Mar 31 2020 19:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47001 * 2 1 4 4 C 1.50699 * 109.47314 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99885 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00282 * 180.02562 * 4 3 2 7 7 C 1.47422 * 125.65109 * 359.96205 * 6 4 3 8 8 C 1.54901 * 104.83704 * 204.16324 * 7 6 4 9 9 C 1.55162 * 101.58138 * 322.98885 * 8 7 6 10 10 C 1.47030 * 125.65005 * 180.02562 * 6 4 3 11 11 H 1.08998 * 109.87934 * 298.48120 * 10 6 4 12 12 C 1.50705 * 109.87940 * 59.49159 * 10 6 4 13 13 O 1.21281 * 120.00071 * 359.97438 * 12 10 6 14 14 N 1.34777 * 119.99937 * 180.02562 * 12 10 6 15 15 C 1.46497 * 120.00242 * 179.97438 * 14 12 10 16 16 C 1.52990 * 109.47171 * 179.97438 * 15 14 12 17 17 H 1.09000 * 112.90908 * 43.75361 * 16 15 14 18 18 C 1.53786 * 113.61464 * 174.99989 * 16 15 14 19 19 C 1.53781 * 87.17350 * 140.02626 * 18 16 15 20 20 H 1.09000 * 113.61379 * 219.89528 * 19 18 16 21 21 N 1.46505 * 113.61334 * 89.07333 * 19 18 16 22 22 C 1.36939 * 119.99616 * 155.00088 * 21 19 18 23 23 H 1.08001 * 120.00373 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99564 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00458 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99710 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47254 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46947 * 120.00074 * 26 24 22 29 29 H 1.48503 * 109.46884 * 239.99662 * 26 24 22 30 30 C 1.53781 * 87.08070 * 334.52830 * 19 18 16 31 31 H 1.08997 * 109.47200 * 299.99828 * 1 2 3 32 32 H 1.08998 * 109.46978 * 59.99777 * 1 2 3 33 33 H 1.08998 * 109.47083 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47508 * 240.00442 * 2 1 3 35 35 H 1.08995 * 109.47469 * 120.00289 * 2 1 3 36 36 H 1.09002 * 109.47087 * 60.00521 * 3 2 1 37 37 H 1.08998 * 109.47437 * 299.99942 * 3 2 1 38 38 H 1.09008 * 110.36477 * 323.00576 * 7 6 4 39 39 H 1.09004 * 110.36740 * 85.20819 * 7 6 4 40 40 H 1.09001 * 111.00529 * 81.06420 * 8 7 6 41 41 H 1.09004 * 111.00685 * 204.87925 * 8 7 6 42 42 H 1.08996 * 110.72036 * 277.13649 * 9 8 7 43 43 H 1.09003 * 110.72080 * 153.86260 * 9 8 7 44 44 H 0.97003 * 119.99582 * 359.97438 * 14 12 10 45 45 H 1.09007 * 109.46596 * 59.99839 * 15 14 12 46 46 H 1.08994 * 109.47005 * 300.00149 * 15 14 12 47 47 H 1.09002 * 113.61357 * 25.43543 * 18 16 15 48 48 H 1.09002 * 113.61608 * 254.61705 * 18 16 15 49 49 H 0.96995 * 120.00170 * 335.00476 * 21 19 18 50 50 H 0.97001 * 120.00131 * 180.02562 * 25 24 22 51 51 H 1.09005 * 113.61471 * 139.98321 * 30 19 18 52 52 H 1.08996 * 113.61178 * 270.79663 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0013 7 6 3.6130 3.9529 0.0006 8 6 4.6947 4.8775 -0.6113 9 6 5.9949 4.2659 -0.0256 10 6 5.6840 2.7545 0.0014 11 1 6.1009 2.3041 0.9021 12 6 6.2648 2.0896 -1.2200 13 8 5.5335 1.5442 -2.0191 14 7 7.5971 2.1003 -1.4237 15 6 8.1618 1.4535 -2.6106 16 6 9.6837 1.6098 -2.6011 17 1 10.1232 1.4236 -1.6212 18 6 10.3872 0.8594 -3.7443 19 6 11.3165 2.0781 -3.8705 20 1 11.5506 2.3438 -4.9014 21 7 12.5060 1.9997 -3.0189 22 6 13.6388 2.6894 -3.3600 23 1 13.6555 3.2907 -4.2570 24 6 14.7661 2.6146 -2.5534 25 7 14.7464 1.8806 -1.4611 26 14 16.3117 3.5548 -3.0191 27 1 16.0769 4.2983 -4.2829 28 1 16.6526 4.5135 -1.9374 29 1 17.4339 2.6005 -3.2066 30 6 10.1766 2.9114 -3.2612 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 2.7136 3.9619 -0.6152 39 1 3.3778 4.2633 1.0187 40 1 4.6903 4.8171 -1.6996 41 1 4.5623 5.9071 -0.2787 42 1 6.1776 4.6404 0.9816 43 1 6.8452 4.4729 -0.6754 44 1 8.1819 2.5363 -0.7843 45 1 7.7545 1.9207 -3.5074 46 1 7.9049 0.3943 -2.6041 47 1 9.7540 0.7009 -4.6173 48 1 10.8982 -0.0478 -3.4218 49 1 12.4912 1.4593 -2.2136 50 1 15.5340 1.8287 -0.8973 51 1 10.5174 3.6614 -2.5473 52 1 9.4868 3.3152 -4.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086557181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:01 Heat of formation + Delta-G solvation = -49.783357 kcal Electronic energy + Delta-G solvation = -29460.342024 eV Core-core repulsion = 25460.251137 eV Total energy + Delta-G solvation = -4000.090886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.90080 -39.23031 -38.40253 -37.35475 -34.66459 -34.54995 -33.22840 -32.02869 -30.54841 -29.84201 -28.12399 -27.08023 -25.04998 -24.32643 -23.66756 -22.32643 -22.13424 -21.56516 -20.38794 -19.36472 -18.37348 -17.69010 -17.37806 -17.18952 -16.25223 -16.00280 -15.48410 -15.38779 -14.99729 -14.78493 -14.27892 -14.16140 -14.03191 -13.80126 -13.62994 -13.51339 -13.19082 -13.03726 -12.93296 -12.85046 -12.28736 -12.24471 -12.01557 -11.91708 -11.77571 -11.69722 -11.43603 -11.40239 -11.32674 -11.04616 -11.01133 -10.86906 -10.48435 -10.16725 -10.09682 -9.93604 -9.80253 -9.70456 -9.48436 -8.95066 -8.87866 -8.82458 -7.01258 -5.82207 -3.11240 2.44765 2.67387 2.67806 3.30671 3.40146 3.46149 3.48305 4.02767 4.09549 4.47954 4.48668 4.54352 4.59302 4.66754 4.71593 4.83594 4.99007 5.07140 5.09441 5.14058 5.17636 5.19312 5.25857 5.29707 5.32640 5.39418 5.43976 5.44570 5.48193 5.64037 5.69912 5.72066 5.74082 5.87415 5.88089 5.91709 6.01432 6.07151 6.12253 6.21648 6.37897 6.47210 6.60623 6.73823 6.90963 7.04093 7.26276 7.56469 7.68036 8.05703 8.30465 8.36903 9.47670 10.05481 10.39745 11.40243 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.001956 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.586451 B =14313.046902 C =14862.690596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.132 4.132 4 C 0.533 3.467 5 O -0.522 6.522 6 N -0.607 5.607 7 C 0.101 3.899 8 C -0.133 4.133 9 C -0.125 4.125 10 C 0.118 3.882 11 H 0.100 0.900 12 C 0.505 3.495 13 O -0.525 6.525 14 N -0.724 5.724 15 C 0.134 3.866 16 C -0.119 4.119 17 H 0.093 0.907 18 C -0.148 4.148 19 C 0.167 3.833 20 H 0.062 0.938 21 N -0.706 5.706 22 C -0.242 4.242 23 H 0.073 0.927 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.908 3.092 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.291 1.291 30 C -0.167 4.167 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.401 0.599 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.066 0.934 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.228 5.593 5.330 29.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.171 4.171 4 C 0.322 3.678 5 O -0.396 6.396 6 N -0.343 5.343 7 C -0.022 4.022 8 C -0.171 4.171 9 C -0.164 4.164 10 C 0.010 3.990 11 H 0.118 0.882 12 C 0.289 3.711 13 O -0.400 6.400 14 N -0.377 5.377 15 C 0.011 3.989 16 C -0.138 4.138 17 H 0.111 0.889 18 C -0.188 4.188 19 C 0.055 3.945 20 H 0.080 0.920 21 N -0.344 5.344 22 C -0.373 4.373 23 H 0.091 0.909 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.739 3.261 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.218 1.218 30 C -0.208 4.208 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.235 0.765 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.085 0.915 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.323 4.608 4.659 29.071 hybrid contribution 1.196 0.602 0.452 1.413 sum -27.127 5.209 5.112 28.092 Atomic orbital electron populations 1.21783 0.95460 1.01985 1.01652 1.21296 0.95188 0.94658 1.03735 1.21666 0.91293 1.00201 1.03986 1.20382 0.89971 0.82006 0.75393 1.90729 1.70244 1.30427 1.48231 1.48287 1.05014 1.06236 1.74761 1.22355 0.97081 0.81737 1.01018 1.22804 0.93700 0.99184 1.01452 1.22704 0.99236 0.91139 1.03281 1.21498 0.82841 0.97224 0.97452 0.88200 1.20712 0.82556 0.80330 0.87536 1.90691 1.59417 1.43745 1.46180 1.46009 1.06789 1.58248 1.26622 1.21430 0.93158 0.97312 0.87008 1.22747 0.91857 0.99369 0.99793 0.88909 1.23442 0.98724 0.99367 0.97257 1.21056 0.86284 0.92643 0.94544 0.91987 1.42179 1.08529 1.56699 1.27023 1.19342 0.89979 1.21697 1.06258 0.90936 1.24766 0.98304 1.00480 0.97369 1.69672 1.29442 1.43635 1.15274 0.86101 0.83401 0.79068 0.77513 1.20498 1.21867 1.21829 1.23920 1.00285 0.96334 1.00247 0.92767 0.92704 0.92369 0.91059 0.91275 0.89204 0.89049 0.90357 0.90896 0.90269 0.89173 0.89148 0.89065 0.76525 0.91799 0.91974 0.90527 0.91352 0.78108 0.93492 0.91538 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.11 -0.98 5.22 -26.73 -0.14 -1.12 16 3 C -0.13 -1.08 4.71 -27.88 -0.13 -1.21 16 4 C 0.53 6.65 6.99 -10.99 -0.08 6.58 16 5 O -0.52 -8.92 15.06 -11.34 -0.17 -9.09 16 6 N -0.61 -6.27 2.88 -164.32 -0.47 -6.74 16 7 C 0.10 0.62 6.69 -2.53 -0.02 0.60 16 8 C -0.13 -0.77 7.08 -24.58 -0.17 -0.95 16 9 C -0.13 -0.85 6.45 -24.90 -0.16 -1.01 16 10 C 0.12 1.23 3.30 -68.10 -0.22 1.00 16 11 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 12 C 0.50 7.10 6.70 -10.98 -0.07 7.02 16 13 O -0.53 -9.56 14.86 -11.33 -0.17 -9.73 16 14 N -0.72 -9.26 5.24 -60.30 -0.32 -9.58 16 15 C 0.13 1.91 5.52 -4.05 -0.02 1.89 16 16 C -0.12 -1.81 3.64 -89.67 -0.33 -2.13 16 17 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 18 C -0.15 -2.43 7.38 -25.92 -0.19 -2.62 16 19 C 0.17 3.25 4.56 -67.11 -0.31 2.95 16 20 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 21 N -0.71 -17.31 5.31 -52.63 -0.28 -17.58 16 22 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 26 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 C -0.17 -2.74 7.44 -25.78 -0.19 -2.93 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.64 7.85 -51.93 -0.41 0.24 16 38 H 0.08 0.39 7.48 -51.92 -0.39 0.00 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.65 7.48 -51.93 -0.39 0.26 16 44 H 0.40 4.29 8.35 -40.82 -0.34 3.95 16 45 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 48 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.38 10.01 7.90 -40.82 -0.32 9.68 16 50 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 52 H 0.07 0.99 7.91 -51.93 -0.41 0.58 16 LS Contribution 417.54 15.07 6.29 6.29 Total: -1.00 -35.71 417.54 -10.72 -46.42 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -9.39 Total: 9.70 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.91 Total: 0.25 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.34 Total: -60.89 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.34 Total: -18.81 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.71 -10.72 -46.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086557181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.360 kcal (2) G-P(sol) polarization free energy of solvation -35.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds