Wall clock time and date at job start Tue Mar 31 2020 19:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47001 * 2 1 4 4 C 1.50699 * 109.47314 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99885 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00282 * 180.02562 * 4 3 2 7 7 C 1.47422 * 125.65109 * 359.96205 * 6 4 3 8 8 C 1.54901 * 104.83704 * 204.16324 * 7 6 4 9 9 C 1.55162 * 101.58138 * 322.98885 * 8 7 6 10 10 C 1.47030 * 125.65005 * 180.02562 * 6 4 3 11 11 H 1.08998 * 109.87934 * 298.48120 * 10 6 4 12 12 C 1.50705 * 109.87940 * 59.49159 * 10 6 4 13 13 O 1.21281 * 120.00071 * 359.97438 * 12 10 6 14 14 N 1.34777 * 119.99937 * 180.02562 * 12 10 6 15 15 C 1.46497 * 120.00242 * 179.97438 * 14 12 10 16 16 C 1.52990 * 109.47171 * 179.97438 * 15 14 12 17 17 H 1.09000 * 112.90908 * 43.75361 * 16 15 14 18 18 C 1.53786 * 113.61464 * 174.99989 * 16 15 14 19 19 C 1.53781 * 87.17350 * 140.02626 * 18 16 15 20 20 H 1.09000 * 113.61379 * 219.89528 * 19 18 16 21 21 N 1.46505 * 113.61334 * 89.07333 * 19 18 16 22 22 C 1.36939 * 119.99616 * 155.00088 * 21 19 18 23 23 H 1.08001 * 120.00373 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99564 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00458 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99710 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47254 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46947 * 120.00074 * 26 24 22 29 29 H 1.48503 * 109.46884 * 239.99662 * 26 24 22 30 30 C 1.53781 * 87.08070 * 334.52830 * 19 18 16 31 31 H 1.08997 * 109.47200 * 299.99828 * 1 2 3 32 32 H 1.08998 * 109.46978 * 59.99777 * 1 2 3 33 33 H 1.08998 * 109.47083 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47508 * 240.00442 * 2 1 3 35 35 H 1.08995 * 109.47469 * 120.00289 * 2 1 3 36 36 H 1.09002 * 109.47087 * 60.00521 * 3 2 1 37 37 H 1.08998 * 109.47437 * 299.99942 * 3 2 1 38 38 H 1.09008 * 110.36477 * 323.00576 * 7 6 4 39 39 H 1.09004 * 110.36740 * 85.20819 * 7 6 4 40 40 H 1.09001 * 111.00529 * 81.06420 * 8 7 6 41 41 H 1.09004 * 111.00685 * 204.87925 * 8 7 6 42 42 H 1.08996 * 110.72036 * 277.13649 * 9 8 7 43 43 H 1.09003 * 110.72080 * 153.86260 * 9 8 7 44 44 H 0.97003 * 119.99582 * 359.97438 * 14 12 10 45 45 H 1.09007 * 109.46596 * 59.99839 * 15 14 12 46 46 H 1.08994 * 109.47005 * 300.00149 * 15 14 12 47 47 H 1.09002 * 113.61357 * 25.43543 * 18 16 15 48 48 H 1.09002 * 113.61608 * 254.61705 * 18 16 15 49 49 H 0.96995 * 120.00170 * 335.00476 * 21 19 18 50 50 H 0.97001 * 120.00131 * 180.02562 * 25 24 22 51 51 H 1.09005 * 113.61471 * 139.98321 * 30 19 18 52 52 H 1.08996 * 113.61178 * 270.79663 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0013 7 6 3.6130 3.9529 0.0006 8 6 4.6947 4.8775 -0.6113 9 6 5.9949 4.2659 -0.0256 10 6 5.6840 2.7545 0.0014 11 1 6.1009 2.3041 0.9021 12 6 6.2648 2.0896 -1.2200 13 8 5.5335 1.5442 -2.0191 14 7 7.5971 2.1003 -1.4237 15 6 8.1618 1.4535 -2.6106 16 6 9.6837 1.6098 -2.6011 17 1 10.1232 1.4236 -1.6212 18 6 10.3872 0.8594 -3.7443 19 6 11.3165 2.0781 -3.8705 20 1 11.5506 2.3438 -4.9014 21 7 12.5060 1.9997 -3.0189 22 6 13.6388 2.6894 -3.3600 23 1 13.6555 3.2907 -4.2570 24 6 14.7661 2.6146 -2.5534 25 7 14.7464 1.8806 -1.4611 26 14 16.3117 3.5548 -3.0191 27 1 16.0769 4.2983 -4.2829 28 1 16.6526 4.5135 -1.9374 29 1 17.4339 2.6005 -3.2066 30 6 10.1766 2.9114 -3.2612 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 2.7136 3.9619 -0.6152 39 1 3.3778 4.2633 1.0187 40 1 4.6903 4.8171 -1.6996 41 1 4.5623 5.9071 -0.2787 42 1 6.1776 4.6404 0.9816 43 1 6.8452 4.4729 -0.6754 44 1 8.1819 2.5363 -0.7843 45 1 7.7545 1.9207 -3.5074 46 1 7.9049 0.3943 -2.6041 47 1 9.7540 0.7009 -4.6173 48 1 10.8982 -0.0478 -3.4218 49 1 12.4912 1.4593 -2.2136 50 1 15.5340 1.8287 -0.8973 51 1 10.5174 3.6614 -2.5473 52 1 9.4868 3.3152 -4.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086557181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:00 Heat of formation + Delta-G solvation = -73.135176 kcal Electronic energy + Delta-G solvation = -29461.354635 eV Core-core repulsion = 25460.251137 eV Total energy + Delta-G solvation = -4001.103497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79161 -40.43470 -39.65775 -38.19971 -36.02484 -35.31093 -34.98724 -32.80076 -32.10211 -30.90779 -28.87076 -28.24498 -26.45135 -25.75298 -24.89875 -23.41616 -22.77108 -22.64346 -21.28720 -20.28380 -19.73216 -19.32943 -18.51663 -18.15946 -17.28950 -16.84107 -16.69965 -16.45129 -16.29666 -15.98521 -15.68271 -15.45591 -14.97521 -14.83107 -14.67030 -14.49512 -14.31200 -14.21777 -13.81122 -13.69570 -13.54526 -13.30536 -12.96672 -12.92779 -12.88720 -12.69660 -12.65917 -12.32450 -12.25578 -12.13719 -12.05849 -12.00722 -11.97184 -11.66350 -11.55111 -11.49203 -11.04067 -10.91947 -10.87757 -10.77603 -10.08816 -9.68554 -9.00678 -7.95543 -5.24104 1.48152 1.48756 1.57583 1.58863 1.60362 1.91534 2.30529 2.55637 3.37146 3.40466 3.55763 3.65608 3.72576 3.76595 3.80078 3.90748 3.97239 4.03314 4.08705 4.13647 4.26983 4.29982 4.36832 4.48445 4.54520 4.65276 4.67588 4.68655 4.72589 4.75615 4.83227 4.87628 4.90268 4.91834 4.96360 5.04438 5.08962 5.20180 5.22067 5.24280 5.27124 5.30658 5.33013 5.43740 5.48335 5.53597 5.64411 6.27854 6.45639 6.55378 7.16157 7.26805 7.32938 8.09567 8.32208 9.27902 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.001956 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.586451 B =14313.046902 C =14862.690596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.123 4.123 4 C 0.519 3.481 5 O -0.583 6.583 6 N -0.609 5.609 7 C 0.094 3.906 8 C -0.129 4.129 9 C -0.118 4.118 10 C 0.113 3.887 11 H 0.100 0.900 12 C 0.499 3.501 13 O -0.571 6.571 14 N -0.717 5.717 15 C 0.145 3.855 16 C -0.101 4.101 17 H 0.081 0.919 18 C -0.138 4.138 19 C 0.145 3.855 20 H 0.061 0.939 21 N -0.719 5.719 22 C -0.241 4.241 23 H 0.078 0.922 24 C -0.076 4.076 25 N -0.969 5.969 26 Si 0.973 3.027 27 H -0.265 1.265 28 H -0.293 1.293 29 H -0.296 1.296 30 C -0.147 4.147 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.412 0.588 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.102 0.898 48 H 0.054 0.946 49 H 0.374 0.626 50 H 0.251 0.749 51 H 0.053 0.947 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.145 8.333 5.477 31.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.162 4.162 4 C 0.310 3.690 5 O -0.463 6.463 6 N -0.343 5.343 7 C -0.027 4.027 8 C -0.167 4.167 9 C -0.156 4.156 10 C 0.005 3.995 11 H 0.118 0.882 12 C 0.285 3.715 13 O -0.450 6.450 14 N -0.370 5.370 15 C 0.021 3.979 16 C -0.120 4.120 17 H 0.099 0.901 18 C -0.177 4.177 19 C 0.035 3.965 20 H 0.079 0.921 21 N -0.358 5.358 22 C -0.373 4.373 23 H 0.096 0.904 24 C -0.268 4.268 25 N -0.620 5.620 26 Si 0.802 3.198 27 H -0.190 1.190 28 H -0.220 1.220 29 H -0.223 1.223 30 C -0.187 4.187 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.106 0.894 44 H 0.248 0.752 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.120 0.880 48 H 0.073 0.927 49 H 0.206 0.794 50 H 0.059 0.941 51 H 0.072 0.928 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -30.276 7.423 4.783 31.538 hybrid contribution 1.750 -0.264 0.347 1.803 sum -28.527 7.159 5.131 29.856 Atomic orbital electron populations 1.21734 0.93043 1.02427 1.02933 1.21264 0.97170 0.94978 1.01505 1.21710 0.88276 1.00019 1.06222 1.21219 0.91679 0.81757 0.74359 1.90691 1.71670 1.32708 1.51200 1.48499 1.05145 1.07415 1.73283 1.22713 0.97414 0.79364 1.03161 1.22837 0.92796 1.00743 1.00305 1.22767 0.99681 0.88152 1.04988 1.21667 0.83201 0.99458 0.95200 0.88229 1.21456 0.82366 0.79555 0.88127 1.90664 1.60445 1.45780 1.48111 1.45951 1.06901 1.57789 1.26362 1.21200 0.92205 0.96680 0.87815 1.22525 0.92318 0.98354 0.98833 0.90118 1.23368 0.98087 0.97619 0.98661 1.21369 0.85852 0.95382 0.93900 0.92061 1.42310 1.09584 1.56525 1.27342 1.19721 0.90830 1.20877 1.05877 0.90423 1.25557 1.01394 1.02098 0.97725 1.69823 1.29966 1.45666 1.16555 0.85074 0.79496 0.77620 0.77565 1.18961 1.22025 1.22311 1.23714 0.98943 0.95959 1.00126 0.90984 0.91799 0.92457 0.94145 0.92837 0.85859 0.87423 0.89001 0.87926 0.92142 0.86007 0.86385 0.89420 0.75228 0.91541 0.93422 0.87956 0.92674 0.79421 0.94054 0.92814 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.11 -1.99 5.22 30.59 0.16 -1.83 16 3 C -0.12 -1.86 4.71 29.85 0.14 -1.72 16 4 C 0.52 12.95 6.99 87.66 0.61 13.56 16 5 O -0.58 -21.05 15.06 13.10 0.20 -20.85 16 6 N -0.61 -11.82 2.88 -792.17 -2.28 -14.10 16 7 C 0.09 0.84 6.69 86.85 0.58 1.42 16 8 C -0.13 -1.08 7.08 31.98 0.23 -0.86 16 9 C -0.12 -1.29 6.45 31.78 0.21 -1.08 16 10 C 0.11 2.25 3.30 44.59 0.15 2.39 16 11 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 12 C 0.50 14.11 6.70 87.66 0.59 14.70 16 13 O -0.57 -21.38 14.86 13.12 0.19 -21.19 16 14 N -0.72 -18.16 5.24 -463.07 -2.43 -20.59 16 15 C 0.14 4.07 5.52 86.38 0.48 4.54 16 16 C -0.10 -3.03 3.64 -10.18 -0.04 -3.06 16 17 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.14 -4.43 7.38 31.12 0.23 -4.20 16 19 C 0.14 5.56 4.56 45.52 0.21 5.77 16 20 H 0.06 2.35 8.10 -2.39 -0.02 2.33 16 21 N -0.72 -35.61 5.31 -320.43 -1.70 -37.31 16 22 C -0.24 -13.20 9.97 84.03 0.84 -12.36 16 23 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 24 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 25 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 26 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 29 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 30 C -0.15 -4.62 7.44 31.21 0.23 -4.39 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 35 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 1.28 7.85 -2.39 -0.02 1.27 16 38 H 0.09 0.60 7.48 -2.38 -0.02 0.58 16 39 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 1.05 7.48 -2.39 -0.02 1.03 16 44 H 0.41 8.56 8.35 -92.71 -0.77 7.79 16 45 H 0.07 1.86 7.85 -2.38 -0.02 1.85 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.10 2.78 8.10 -2.39 -0.02 2.76 16 48 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.37 19.91 7.90 -92.71 -0.73 19.18 16 50 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 51 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 52 H 0.09 2.47 7.91 -2.39 -0.02 2.45 16 Total: -1.00 -81.49 417.54 1.48 -80.01 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -0.60 Total: 36.69 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.79 Total: 8.19 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -6.12 Total: -130.46 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: 0.39 Total: -42.04 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -81.49 1.48 -80.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086557181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.871 kcal (2) G-P(sol) polarization free energy of solvation -81.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds