Wall clock time and date at job start Tue Mar 31 2020 20:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47135 * 2 1 4 4 H 1.08996 * 109.99667 * 55.89567 * 3 2 1 5 5 C 1.54319 * 109.88219 * 294.79532 * 3 2 1 6 6 H 1.09006 * 110.72297 * 336.93154 * 5 3 2 7 7 N 1.46501 * 110.71854 * 100.02689 * 5 3 2 8 8 C 1.34778 * 119.99899 * 204.99480 * 7 5 3 9 9 O 1.21282 * 119.99703 * 0.02562 * 8 7 5 10 10 C 1.50699 * 119.99970 * 179.72330 * 8 7 5 11 11 H 1.09005 * 110.85670 * 297.94438 * 10 8 7 12 12 C 1.54624 * 110.96962 * 61.73298 * 10 8 7 13 13 C 1.51276 * 104.19600 * 142.91561 * 12 10 8 14 14 O 1.21281 * 124.94111 * 163.78444 * 13 12 10 15 15 N 1.34417 * 110.11935 * 343.74751 * 13 12 10 16 16 C 1.46496 * 124.35541 * 179.57263 * 15 13 12 17 17 C 1.53006 * 109.46815 * 299.97680 * 16 15 13 18 18 C 1.52995 * 109.47327 * 59.97430 * 16 15 13 19 19 C 1.46768 * 111.29516 * 359.59363 * 15 13 12 20 20 C 1.55155 * 102.94080 * 218.38988 * 5 3 2 21 21 C 1.54902 * 101.58578 * 35.50338 * 20 5 3 22 22 N 1.47025 * 109.87888 * 176.98687 * 3 2 1 23 23 C 1.36938 * 125.65133 * 298.32271 * 22 3 2 24 24 H 1.07997 * 119.99514 * 345.37012 * 23 22 3 25 25 C 1.38804 * 120.00182 * 165.37393 * 23 22 3 26 26 N 1.31622 * 120.00196 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00203 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46862 * 89.99873 * 27 25 23 29 29 H 1.48497 * 109.47125 * 209.99773 * 27 25 23 30 30 H 1.48492 * 109.47082 * 330.00153 * 27 25 23 31 31 H 1.09008 * 109.46755 * 305.57608 * 1 2 3 32 32 H 1.08999 * 109.47315 * 65.57333 * 1 2 3 33 33 H 1.08995 * 109.47185 * 185.57953 * 1 2 3 34 34 H 1.09001 * 109.47201 * 240.00462 * 2 1 3 35 35 H 1.08999 * 109.47718 * 120.00672 * 2 1 3 36 36 H 0.96991 * 120.00025 * 24.99887 * 7 5 3 37 37 H 1.09001 * 110.48668 * 261.59687 * 12 10 8 38 38 H 1.09007 * 110.48206 * 24.23703 * 12 10 8 39 39 H 1.08994 * 109.47457 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47356 * 59.99645 * 17 16 15 41 41 H 1.08997 * 109.46958 * 179.97438 * 17 16 15 42 42 H 1.09005 * 109.47016 * 299.99876 * 17 16 15 43 43 H 1.09005 * 109.47281 * 60.00079 * 18 16 15 44 44 H 1.08995 * 109.47406 * 180.02562 * 18 16 15 45 45 H 1.09003 * 109.47274 * 300.00542 * 18 16 15 46 46 H 1.08999 * 110.24530 * 258.00726 * 19 15 13 47 47 H 1.09005 * 110.24026 * 136.01696 * 19 15 13 48 48 H 1.08999 * 111.00559 * 153.57928 * 20 5 3 49 49 H 1.09001 * 111.00366 * 277.42908 * 20 5 3 50 50 H 1.08994 * 110.37356 * 204.15281 * 21 20 5 51 51 H 1.09004 * 110.46043 * 81.87246 * 21 20 5 52 52 H 0.97002 * 120.00366 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9854 0.8481 5 6 1.6411 2.1402 -1.3174 6 1 1.4632 1.4067 -2.1038 7 7 0.4591 2.9830 -1.1203 8 6 -0.3451 3.2703 -2.1630 9 8 -0.0905 2.8307 -3.2643 10 6 -1.5644 4.1322 -1.9591 11 1 -2.2622 3.6599 -1.2675 12 6 -1.1684 5.5438 -1.4678 13 6 -2.1468 6.4660 -2.1611 14 8 -2.3630 7.6159 -1.8420 15 7 -2.7412 5.8257 -3.1826 16 6 -3.7505 6.4254 -4.0589 17 6 -4.9573 6.8594 -3.2244 18 6 -3.1536 7.6444 -4.7649 19 6 -2.2495 4.4485 -3.3070 20 6 2.8859 3.0076 -1.6419 21 6 4.0370 2.0990 -1.1429 22 7 3.5084 1.4536 0.0727 23 6 4.2605 0.9490 1.0997 24 1 3.7943 0.7123 2.0447 25 6 5.6220 0.7418 0.9263 26 7 6.1901 1.0299 -0.2255 27 14 6.6481 0.0541 2.3276 28 1 6.6646 -1.4287 2.2476 29 1 8.0365 0.5708 2.2244 30 1 6.0590 0.4733 3.6246 31 1 -0.3633 0.5979 0.8359 32 1 -0.3634 0.4250 -0.9357 33 1 -0.3633 -1.0227 0.0999 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.2554 3.3343 -0.2395 37 1 -1.2775 5.6156 -0.3856 38 1 -0.1463 5.7785 -1.7655 39 1 -4.0670 5.6939 -4.8024 40 1 -4.6408 7.5910 -2.4810 41 1 -5.7081 7.3060 -3.8764 42 1 -5.3826 5.9909 -2.7215 43 1 -2.2939 7.3352 -5.3594 44 1 -3.9047 8.0908 -5.4165 45 1 -2.8371 8.3760 -4.0214 46 1 -1.5294 4.3773 -4.1221 47 1 -3.0814 3.7649 -3.4769 48 1 2.9676 3.1884 -2.7137 49 1 2.8623 3.9470 -1.0896 50 1 4.9159 2.6972 -0.9032 51 1 4.2831 1.3486 -1.8943 52 1 7.1415 0.8848 -0.3469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087591771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:44 Heat of formation + Delta-G solvation = -54.412748 kcal Electronic energy + Delta-G solvation = -30549.474009 eV Core-core repulsion = 26549.182377 eV Total energy + Delta-G solvation = -4000.291632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.12730 -39.61352 -37.85043 -36.52102 -35.17314 -34.12600 -32.81649 -31.81196 -30.55381 -28.96264 -27.96792 -27.49305 -26.63360 -24.69493 -23.41812 -22.71514 -22.04107 -20.48946 -20.22793 -19.41824 -19.14385 -17.62557 -16.94111 -16.88176 -16.11301 -16.01626 -15.27004 -14.93076 -14.78978 -14.40088 -14.14343 -14.00695 -13.89663 -13.88236 -13.85590 -13.39438 -13.11721 -12.98751 -12.75820 -12.37405 -12.30183 -12.05557 -11.97047 -11.90097 -11.69976 -11.61049 -11.55764 -11.41980 -11.19607 -10.92389 -10.87979 -10.66907 -10.50842 -10.36321 -10.10969 -9.99896 -9.79790 -9.69260 -9.61837 -8.97569 -8.72907 -8.61378 -6.84567 -5.78981 -3.15559 2.35507 2.56605 2.62684 3.19365 3.36622 3.42194 3.43683 3.96440 4.06589 4.44064 4.51479 4.53016 4.67463 4.73046 4.87397 4.94435 5.16713 5.21888 5.29005 5.31330 5.31727 5.34140 5.44934 5.47567 5.49747 5.50870 5.54872 5.64483 5.70174 5.75265 5.80394 5.87311 5.95081 6.00521 6.17977 6.22743 6.34738 6.36069 6.41047 6.50598 6.61982 6.67564 6.86167 6.90076 7.08614 7.46685 7.55403 7.61295 7.75373 7.94102 8.21240 8.26004 9.14380 9.75462 10.42821 11.32973 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.002385 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.056224 B =11738.512083 C =12069.630916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.137 3.863 6 H 0.096 0.904 7 N -0.708 5.708 8 C 0.524 3.476 9 O -0.537 6.537 10 C -0.124 4.124 11 H 0.118 0.882 12 C -0.148 4.148 13 C 0.523 3.477 14 O -0.528 6.528 15 N -0.617 5.617 16 C 0.152 3.848 17 C -0.167 4.167 18 C -0.169 4.169 19 C 0.118 3.882 20 C -0.156 4.156 21 C 0.174 3.826 22 N -0.594 5.594 23 C -0.229 4.229 24 H 0.075 0.925 25 C -0.003 4.003 26 N -0.916 5.916 27 Si 0.910 3.090 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.028 0.972 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.574 7.695 -5.818 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.052 3.948 4 H 0.053 0.947 5 C 0.032 3.968 6 H 0.114 0.886 7 N -0.358 5.358 8 C 0.309 3.691 9 O -0.414 6.414 10 C -0.146 4.146 11 H 0.136 0.864 12 C -0.188 4.188 13 C 0.310 3.690 14 O -0.405 6.405 15 N -0.352 5.352 16 C 0.050 3.950 17 C -0.225 4.225 18 C -0.227 4.227 19 C -0.005 4.005 20 C -0.196 4.196 21 C 0.049 3.951 22 N -0.318 5.318 23 C -0.357 4.357 24 H 0.093 0.907 25 C -0.200 4.200 26 N -0.562 5.562 27 Si 0.740 3.260 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.102 0.898 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.046 0.954 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.299 7.965 -6.459 22.742 hybrid contribution 0.532 -0.467 1.117 1.322 sum -19.767 7.498 -5.342 21.806 Atomic orbital electron populations 1.21767 0.97295 1.00512 1.00821 1.22015 0.93538 0.99179 1.02437 1.21085 0.87124 0.93355 0.93192 0.94732 1.22158 0.83303 0.92413 0.98880 0.88640 1.46048 1.26764 1.51709 1.11274 1.19948 0.83538 0.80806 0.84839 1.90722 1.73449 1.52915 1.24319 1.22251 0.97234 0.95782 0.99316 0.86444 1.22387 1.01056 0.92451 1.02925 1.20702 0.80976 0.87112 0.80176 1.90702 1.65301 1.16970 1.67507 1.48494 1.41119 1.13775 1.31764 1.20944 0.87303 0.95417 0.91306 1.22186 0.96964 1.02284 1.01094 1.22190 1.01327 0.98234 1.00921 1.21985 0.99277 0.82061 0.97166 1.23419 0.96763 0.99085 1.00329 1.21428 0.93124 0.92901 0.87687 1.44442 0.98343 1.68394 1.20666 1.18924 0.89915 1.36045 0.90809 0.90720 1.24911 0.97257 1.00867 0.96973 1.69924 1.10716 1.52737 1.22857 0.86160 0.79698 0.78867 0.81261 1.21510 1.21676 1.20631 0.93461 0.93361 0.93706 0.92371 0.91721 0.76665 0.87121 0.87107 0.89336 0.90982 0.91464 0.92470 0.92337 0.91472 0.90949 0.89018 0.89812 0.91932 0.91991 0.90825 0.95394 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.58 37.16 0.36 -1.63 16 2 C -0.13 -2.32 5.41 -26.73 -0.14 -2.46 16 3 C 0.16 2.98 2.94 -66.95 -0.20 2.79 16 4 H 0.04 0.63 7.72 -51.93 -0.40 0.22 16 5 C 0.14 2.24 2.02 -66.10 -0.13 2.11 16 6 H 0.10 1.73 7.18 -51.93 -0.37 1.35 16 7 N -0.71 -8.67 4.87 -52.03 -0.25 -8.92 16 8 C 0.52 6.24 7.07 -10.99 -0.08 6.17 16 9 O -0.54 -8.41 15.21 5.56 0.08 -8.33 16 10 C -0.12 -1.03 3.54 -90.15 -0.32 -1.35 16 11 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 12 C -0.15 -1.29 6.37 -26.75 -0.17 -1.46 16 13 C 0.52 5.76 7.41 -10.86 -0.08 5.68 16 14 O -0.53 -7.51 15.12 5.56 0.08 -7.43 16 15 N -0.62 -5.65 2.83 -164.85 -0.47 -6.12 16 16 C 0.15 1.20 3.47 -67.93 -0.24 0.97 16 17 C -0.17 -1.27 9.20 37.16 0.34 -0.92 16 18 C -0.17 -1.40 9.20 37.15 0.34 -1.05 16 19 C 0.12 1.00 6.62 -3.12 -0.02 0.97 16 20 C -0.16 -2.86 6.77 -24.59 -0.17 -3.02 16 21 C 0.17 4.04 5.41 -2.53 -0.01 4.02 16 22 N -0.59 -14.09 3.13 -162.58 -0.51 -14.60 16 23 C -0.23 -6.02 9.75 -15.06 -0.15 -6.16 16 24 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 25 C 0.00 -0.08 5.47 -17.43 -0.10 -0.18 16 26 N -0.92 -26.10 10.58 55.49 0.59 -25.51 16 27 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.05 0.64 7.40 -51.93 -0.38 0.26 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 35 H 0.06 1.23 7.90 -51.93 -0.41 0.82 16 36 H 0.40 3.99 8.37 -40.82 -0.34 3.65 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.11 1.04 7.89 -51.92 -0.41 0.63 16 39 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 40 H 0.07 0.72 6.80 -51.93 -0.35 0.36 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.77 6.77 -51.93 -0.35 0.42 16 46 H 0.09 0.92 7.06 -51.93 -0.37 0.56 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 50 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 51 H 0.03 0.71 8.06 -51.93 -0.42 0.30 16 52 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -31.89 406.75 -9.33 -41.23 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -9.20 Total: 2.66 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -0.76 Total: 4.47 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.64 Total: -55.15 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.17 Total: -15.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.89 -9.33 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087591771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.188 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds