Wall clock time and date at job start Tue Mar 31 2020 20:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47135 * 2 1 4 4 H 1.08996 * 109.99667 * 55.89567 * 3 2 1 5 5 C 1.54319 * 109.88219 * 294.79532 * 3 2 1 6 6 H 1.09006 * 110.72297 * 336.93154 * 5 3 2 7 7 N 1.46501 * 110.71854 * 100.02689 * 5 3 2 8 8 C 1.34778 * 119.99899 * 204.99480 * 7 5 3 9 9 O 1.21282 * 119.99703 * 0.02562 * 8 7 5 10 10 C 1.50699 * 119.99970 * 179.72330 * 8 7 5 11 11 H 1.09005 * 110.85670 * 297.94438 * 10 8 7 12 12 C 1.54624 * 110.96962 * 61.73298 * 10 8 7 13 13 C 1.51276 * 104.19600 * 142.91561 * 12 10 8 14 14 O 1.21281 * 124.94111 * 163.78444 * 13 12 10 15 15 N 1.34417 * 110.11935 * 343.74751 * 13 12 10 16 16 C 1.46496 * 124.35541 * 179.57263 * 15 13 12 17 17 C 1.53006 * 109.46815 * 299.97680 * 16 15 13 18 18 C 1.52995 * 109.47327 * 59.97430 * 16 15 13 19 19 C 1.46768 * 111.29516 * 359.59363 * 15 13 12 20 20 C 1.55155 * 102.94080 * 218.38988 * 5 3 2 21 21 C 1.54902 * 101.58578 * 35.50338 * 20 5 3 22 22 N 1.47025 * 109.87888 * 176.98687 * 3 2 1 23 23 C 1.36938 * 125.65133 * 298.32271 * 22 3 2 24 24 H 1.07997 * 119.99514 * 345.37012 * 23 22 3 25 25 C 1.38804 * 120.00182 * 165.37393 * 23 22 3 26 26 N 1.31622 * 120.00196 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00203 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46862 * 89.99873 * 27 25 23 29 29 H 1.48497 * 109.47125 * 209.99773 * 27 25 23 30 30 H 1.48492 * 109.47082 * 330.00153 * 27 25 23 31 31 H 1.09008 * 109.46755 * 305.57608 * 1 2 3 32 32 H 1.08999 * 109.47315 * 65.57333 * 1 2 3 33 33 H 1.08995 * 109.47185 * 185.57953 * 1 2 3 34 34 H 1.09001 * 109.47201 * 240.00462 * 2 1 3 35 35 H 1.08999 * 109.47718 * 120.00672 * 2 1 3 36 36 H 0.96991 * 120.00025 * 24.99887 * 7 5 3 37 37 H 1.09001 * 110.48668 * 261.59687 * 12 10 8 38 38 H 1.09007 * 110.48206 * 24.23703 * 12 10 8 39 39 H 1.08994 * 109.47457 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47356 * 59.99645 * 17 16 15 41 41 H 1.08997 * 109.46958 * 179.97438 * 17 16 15 42 42 H 1.09005 * 109.47016 * 299.99876 * 17 16 15 43 43 H 1.09005 * 109.47281 * 60.00079 * 18 16 15 44 44 H 1.08995 * 109.47406 * 180.02562 * 18 16 15 45 45 H 1.09003 * 109.47274 * 300.00542 * 18 16 15 46 46 H 1.08999 * 110.24530 * 258.00726 * 19 15 13 47 47 H 1.09005 * 110.24026 * 136.01696 * 19 15 13 48 48 H 1.08999 * 111.00559 * 153.57928 * 20 5 3 49 49 H 1.09001 * 111.00366 * 277.42908 * 20 5 3 50 50 H 1.08994 * 110.37356 * 204.15281 * 21 20 5 51 51 H 1.09004 * 110.46043 * 81.87246 * 21 20 5 52 52 H 0.97002 * 120.00366 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9854 0.8481 5 6 1.6411 2.1402 -1.3174 6 1 1.4632 1.4067 -2.1038 7 7 0.4591 2.9830 -1.1203 8 6 -0.3451 3.2703 -2.1630 9 8 -0.0905 2.8307 -3.2643 10 6 -1.5644 4.1322 -1.9591 11 1 -2.2622 3.6599 -1.2675 12 6 -1.1684 5.5438 -1.4678 13 6 -2.1468 6.4660 -2.1611 14 8 -2.3630 7.6159 -1.8420 15 7 -2.7412 5.8257 -3.1826 16 6 -3.7505 6.4254 -4.0589 17 6 -4.9573 6.8594 -3.2244 18 6 -3.1536 7.6444 -4.7649 19 6 -2.2495 4.4485 -3.3070 20 6 2.8859 3.0076 -1.6419 21 6 4.0370 2.0990 -1.1429 22 7 3.5084 1.4536 0.0727 23 6 4.2605 0.9490 1.0997 24 1 3.7943 0.7123 2.0447 25 6 5.6220 0.7418 0.9263 26 7 6.1901 1.0299 -0.2255 27 14 6.6481 0.0541 2.3276 28 1 6.6646 -1.4287 2.2476 29 1 8.0365 0.5708 2.2244 30 1 6.0590 0.4733 3.6246 31 1 -0.3633 0.5979 0.8359 32 1 -0.3634 0.4250 -0.9357 33 1 -0.3633 -1.0227 0.0999 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.2554 3.3343 -0.2395 37 1 -1.2775 5.6156 -0.3856 38 1 -0.1463 5.7785 -1.7655 39 1 -4.0670 5.6939 -4.8024 40 1 -4.6408 7.5910 -2.4810 41 1 -5.7081 7.3060 -3.8764 42 1 -5.3826 5.9909 -2.7215 43 1 -2.2939 7.3352 -5.3594 44 1 -3.9047 8.0908 -5.4165 45 1 -2.8371 8.3760 -4.0214 46 1 -1.5294 4.3773 -4.1221 47 1 -3.0814 3.7649 -3.4769 48 1 2.9676 3.1884 -2.7137 49 1 2.8623 3.9470 -1.0896 50 1 4.9159 2.6972 -0.9032 51 1 4.2831 1.3486 -1.8943 52 1 7.1415 0.8848 -0.3469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087591771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:43 Heat of formation + Delta-G solvation = -74.649861 kcal Electronic energy + Delta-G solvation = -30550.351556 eV Core-core repulsion = 26549.182377 eV Total energy + Delta-G solvation = -4001.169179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95156 -40.73049 -39.26571 -37.38269 -35.88447 -35.60150 -34.24690 -33.46685 -31.49287 -30.56727 -28.73156 -28.11202 -28.03994 -26.42906 -24.53202 -23.39230 -23.31414 -22.11131 -21.47529 -20.73161 -19.90983 -18.73410 -18.50638 -17.65078 -17.30225 -16.98066 -16.67670 -16.13387 -15.93792 -15.69320 -15.46106 -15.15242 -15.00294 -14.72150 -14.68626 -14.52127 -14.29580 -14.09054 -13.68539 -13.67319 -13.50765 -13.19241 -13.02424 -12.95039 -12.85646 -12.71327 -12.57913 -12.54001 -12.33587 -12.19473 -12.17799 -12.07237 -12.01417 -11.94242 -11.84772 -11.54636 -11.31750 -10.98551 -10.66969 -10.57054 -9.94674 -9.70797 -8.80326 -7.84324 -5.21712 1.47936 1.48911 1.54056 1.57353 1.62510 1.87266 2.22033 2.52631 3.21088 3.34962 3.37487 3.60139 3.82863 3.86084 3.88994 3.95728 4.02214 4.11644 4.21430 4.26711 4.30583 4.41885 4.46104 4.55820 4.62685 4.66180 4.69775 4.72643 4.73576 4.79770 4.85146 4.87948 4.91525 4.92580 4.98787 5.06093 5.20550 5.23246 5.25595 5.31279 5.36039 5.49790 5.53282 5.60728 5.67802 5.71463 5.74685 6.13426 6.25686 6.60841 7.11035 7.15321 7.28351 7.79319 8.45885 9.26938 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.002385 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.056224 B =11738.512083 C =12069.630916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.157 3.843 4 H 0.055 0.945 5 C 0.158 3.842 6 H 0.081 0.919 7 N -0.698 5.698 8 C 0.529 3.471 9 O -0.573 6.573 10 C -0.107 4.107 11 H 0.154 0.846 12 C -0.143 4.143 13 C 0.514 3.486 14 O -0.568 6.568 15 N -0.612 5.612 16 C 0.144 3.856 17 C -0.160 4.160 18 C -0.165 4.165 19 C 0.118 3.882 20 C -0.141 4.141 21 C 0.181 3.819 22 N -0.614 5.614 23 C -0.229 4.229 24 H 0.083 0.917 25 C -0.064 4.064 26 N -0.950 5.950 27 Si 0.972 3.028 28 H -0.289 1.289 29 H -0.298 1.298 30 H -0.266 1.266 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.033 0.967 35 H 0.046 0.954 36 H 0.415 0.585 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.038 0.962 51 H -0.008 1.008 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.810 7.533 -4.911 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.050 3.950 4 H 0.072 0.928 5 C 0.052 3.948 6 H 0.099 0.901 7 N -0.349 5.349 8 C 0.316 3.684 9 O -0.452 6.452 10 C -0.128 4.128 11 H 0.172 0.828 12 C -0.183 4.183 13 C 0.302 3.698 14 O -0.447 6.447 15 N -0.346 5.346 16 C 0.043 3.957 17 C -0.218 4.218 18 C -0.223 4.223 19 C -0.005 4.005 20 C -0.181 4.181 21 C 0.055 3.945 22 N -0.338 5.338 23 C -0.358 4.358 24 H 0.100 0.900 25 C -0.257 4.257 26 N -0.598 5.598 27 Si 0.801 3.199 28 H -0.216 1.216 29 H -0.225 1.225 30 H -0.191 1.191 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.252 0.748 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.127 0.873 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.056 0.944 51 H 0.010 0.990 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -23.601 7.800 -5.534 25.465 hybrid contribution 1.493 -0.400 0.768 1.726 sum -22.108 7.400 -4.766 23.796 Atomic orbital electron populations 1.21648 0.93533 1.01898 1.01999 1.21906 0.96745 0.97659 1.00355 1.21297 0.84203 0.94563 0.94892 0.92774 1.21623 0.84106 0.91957 0.97110 0.90116 1.45806 1.25396 1.51172 1.12502 1.20486 0.83895 0.80232 0.83798 1.90728 1.74352 1.54323 1.25812 1.22202 0.95773 0.94767 1.00067 0.82834 1.22392 0.99937 0.91911 1.04091 1.21096 0.81206 0.86863 0.80593 1.90687 1.66621 1.18690 1.68751 1.48616 1.40770 1.13988 1.31190 1.21175 0.87088 0.95774 0.91706 1.22120 0.97135 1.01886 1.00694 1.22154 1.01777 0.97992 1.00392 1.22042 0.99842 0.81966 0.96638 1.23223 0.95691 0.98723 1.00465 1.21127 0.93960 0.92327 0.87099 1.44688 1.00744 1.68383 1.20013 1.19290 0.90311 1.34465 0.91736 0.89976 1.25693 0.98665 1.02165 0.99217 1.70138 1.10301 1.54593 1.24816 0.85166 0.77683 0.77806 0.79227 1.21599 1.22503 1.19065 0.91297 0.92807 0.92538 0.94800 0.93551 0.74753 0.84944 0.87856 0.86816 0.93768 0.89715 0.91697 0.92885 0.89489 0.93753 0.90746 0.87280 0.91573 0.90704 0.94398 0.98985 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.58 71.98 0.69 -2.48 16 2 C -0.13 -4.32 5.41 30.59 0.17 -4.16 16 3 C 0.16 5.64 2.94 45.34 0.13 5.77 16 4 H 0.05 1.78 7.72 -2.39 -0.02 1.76 16 5 C 0.16 4.97 2.02 46.18 0.09 5.06 16 6 H 0.08 2.86 7.18 -2.38 -0.02 2.84 16 7 N -0.70 -14.90 4.87 -436.92 -2.13 -17.03 16 8 C 0.53 11.00 7.07 87.66 0.62 11.62 16 9 O -0.57 -16.83 15.21 -3.04 -0.05 -16.88 16 10 C -0.11 -1.36 3.54 -10.49 -0.04 -1.39 16 11 H 0.15 0.98 8.14 -2.38 -0.02 0.96 16 12 C -0.14 -2.08 6.37 30.58 0.19 -1.89 16 13 C 0.51 10.51 7.41 87.90 0.65 11.17 16 14 O -0.57 -16.01 15.12 -3.03 -0.05 -16.05 16 15 N -0.61 -9.86 2.83 -794.06 -2.25 -12.11 16 16 C 0.14 1.96 3.47 44.99 0.16 2.12 16 17 C -0.16 -2.10 9.20 71.98 0.66 -1.44 16 18 C -0.17 -2.58 9.20 71.98 0.66 -1.91 16 19 C 0.12 1.61 6.62 86.83 0.57 2.19 16 20 C -0.14 -5.14 6.77 31.98 0.22 -4.93 16 21 C 0.18 8.74 5.41 86.85 0.47 9.21 16 22 N -0.61 -29.49 3.13 -668.27 -2.09 -31.58 16 23 C -0.23 -12.16 9.75 84.03 0.82 -11.34 16 24 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 25 C -0.06 -3.56 5.47 84.86 0.46 -3.10 16 26 N -0.95 -56.51 10.58 21.65 0.23 -56.28 16 27 Si 0.97 44.83 29.55 68.60 2.03 46.85 16 28 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 29 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 30 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 31 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.05 1.24 7.40 -2.39 -0.02 1.22 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 35 H 0.05 1.73 7.90 -2.39 -0.02 1.71 16 36 H 0.42 6.51 8.37 -92.71 -0.78 5.73 16 37 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 1.71 7.89 -2.38 -0.02 1.70 16 39 H 0.11 1.00 8.07 -2.39 -0.02 0.99 16 40 H 0.04 0.85 6.80 -2.39 -0.02 0.83 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.04 0.95 6.77 -2.39 -0.02 0.93 16 46 H 0.07 1.34 7.06 -2.39 -0.02 1.32 16 47 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 48 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 50 H 0.04 2.07 6.93 -2.39 -0.02 2.06 16 51 H -0.01 -0.43 8.06 -2.39 -0.02 -0.45 16 52 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -73.88 406.75 2.36 -71.52 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.12 Total: 17.06 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 6.53 Total: 14.50 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -6.24 Total: -117.00 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.09 Total: -32.93 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -73.88 2.36 -71.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087591771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.131 kcal (2) G-P(sol) polarization free energy of solvation -73.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds