Wall clock time and date at job start Tue Mar 31 2020 20:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52990 * 109.47390 * 2 1 4 4 H 1.09003 * 110.00229 * 55.88853 * 3 2 1 5 5 C 1.54330 * 109.88223 * 294.79429 * 3 2 1 6 6 H 1.08996 * 110.72279 * 336.92954 * 5 3 2 7 7 N 1.46503 * 110.71938 * 100.02802 * 5 3 2 8 8 C 1.34780 * 119.99831 * 205.00295 * 7 5 3 9 9 O 1.21276 * 119.99965 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99884 * 179.97438 * 8 7 5 11 11 C 1.52996 * 109.47192 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47158 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47485 * 59.99690 * 12 11 10 14 14 C 1.50702 * 109.47294 * 180.02562 * 13 12 11 15 15 N 1.34774 * 119.99832 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99821 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47176 * 300.00299 * 13 12 11 18 18 C 1.53001 * 109.47284 * 59.99862 * 17 13 12 19 19 C 1.55159 * 102.94007 * 218.38756 * 5 3 2 20 20 C 1.54901 * 101.58407 * 35.50496 * 19 5 3 21 21 N 1.47024 * 109.88648 * 176.98676 * 3 2 1 22 22 C 1.36932 * 125.64813 * 298.32458 * 21 3 2 23 23 H 1.08001 * 120.00094 * 345.36685 * 22 21 3 24 24 C 1.38804 * 120.00236 * 165.36411 * 22 21 3 25 25 N 1.31621 * 120.00261 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 120.00219 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47242 * 90.00022 * 26 24 22 28 28 H 1.48496 * 109.47034 * 210.00437 * 26 24 22 29 29 H 1.48505 * 109.46734 * 329.99769 * 26 24 22 30 30 H 1.08997 * 109.47620 * 65.57681 * 1 2 3 31 31 H 1.09005 * 109.47208 * 185.58099 * 1 2 3 32 32 H 1.09005 * 109.46773 * 305.57844 * 1 2 3 33 33 H 1.09004 * 109.47015 * 239.99791 * 2 1 3 34 34 H 1.09001 * 109.47285 * 120.00332 * 2 1 3 35 35 H 0.97000 * 120.00425 * 24.99582 * 7 5 3 36 36 H 1.09003 * 109.46999 * 299.99709 * 10 8 7 37 37 H 1.08997 * 109.47362 * 59.99669 * 11 10 8 38 38 H 1.09004 * 109.46743 * 300.00301 * 11 10 8 39 39 H 1.09002 * 109.46757 * 180.02562 * 12 11 10 40 40 H 1.08996 * 109.46892 * 299.99293 * 12 11 10 41 41 H 1.09003 * 109.47103 * 60.00132 * 13 12 11 42 42 H 0.97002 * 120.00496 * 0.02562 * 15 14 13 43 43 H 0.97002 * 119.99524 * 179.97438 * 15 14 13 44 44 H 1.09003 * 109.46968 * 299.99916 * 17 13 12 45 45 H 1.08997 * 109.47362 * 180.02562 * 17 13 12 46 46 H 1.09002 * 109.47284 * 180.02562 * 18 17 13 47 47 H 1.08996 * 109.47063 * 59.99703 * 18 17 13 48 48 H 1.09006 * 111.00148 * 153.57692 * 19 5 3 49 49 H 1.08997 * 111.00507 * 277.42090 * 19 5 3 50 50 H 1.08994 * 110.37005 * 204.14865 * 20 19 5 51 51 H 1.09000 * 110.46427 * 81.87212 * 20 19 5 52 52 H 0.97003 * 120.00353 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6228 1.9854 0.8480 5 6 1.6412 2.1401 -1.3175 6 1 1.4633 1.4066 -2.1039 7 7 0.4592 2.9830 -1.1205 8 6 -0.3450 3.2702 -2.1632 9 8 -0.0900 2.8312 -3.2646 10 6 -1.5612 4.1368 -1.9604 11 6 -2.2943 4.3066 -3.2925 12 6 -3.5286 5.1870 -3.0867 13 6 -3.0957 6.5583 -2.5644 14 6 -4.3116 7.4251 -2.3611 15 7 -4.1720 8.6852 -1.9037 16 8 -5.4156 6.9892 -2.6101 17 6 -2.3626 6.3884 -1.2323 18 6 -1.1282 5.5082 -1.4380 19 6 2.8861 3.0075 -1.6420 20 6 4.0370 2.0988 -1.1430 21 7 3.5084 1.4536 0.0727 22 6 4.2605 0.9490 1.0997 23 1 3.7943 0.7123 2.0447 24 6 5.6220 0.7417 0.9263 25 7 6.1903 1.0306 -0.2252 26 14 6.6478 0.0526 2.3272 27 1 6.6641 -1.4300 2.2461 28 1 8.0362 0.5693 2.2246 29 1 6.0585 0.4711 3.6245 30 1 -0.3634 0.4249 -0.9356 31 1 -0.3634 -1.0228 0.0999 32 1 -0.3633 0.5980 0.8359 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.2554 3.3343 -0.2396 36 1 -2.2264 3.6657 -1.2367 37 1 -2.6023 3.3297 -3.6649 38 1 -1.6288 4.7778 -4.0159 39 1 -4.0511 5.3076 -4.0357 40 1 -4.1941 4.7161 -2.3633 41 1 -2.4302 7.0292 -3.2879 42 1 -3.2889 9.0343 -1.7056 43 1 -4.9546 9.2432 -1.7732 44 1 -3.0282 5.9176 -0.5088 45 1 -2.0546 7.3654 -0.8599 46 1 -0.6062 5.3868 -0.4889 47 1 -0.4628 5.9790 -2.1615 48 1 2.9677 3.1882 -2.7139 49 1 2.8624 3.9469 -1.0898 50 1 4.9160 2.6970 -0.9033 51 1 4.2831 1.3484 -1.8942 52 1 7.1418 0.8861 -0.3463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087635403.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:53 Heat of formation + Delta-G solvation = -84.992683 kcal Electronic energy + Delta-G solvation = -30417.816999 eV Core-core repulsion = 26416.199321 eV Total energy + Delta-G solvation = -4001.617677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.66855 -39.73340 -38.09496 -36.98444 -34.11002 -34.03493 -32.79026 -31.94994 -31.23100 -30.95976 -28.94071 -26.65570 -25.09962 -24.12930 -22.93941 -22.27693 -21.37841 -20.38721 -20.13070 -19.99382 -19.30700 -17.89001 -17.07379 -16.86058 -16.77154 -16.08610 -15.59084 -14.91042 -14.79110 -14.66979 -14.35496 -14.11968 -14.03876 -13.82722 -13.53836 -13.42269 -13.01033 -12.72250 -12.60311 -12.51476 -12.01422 -11.95043 -11.69180 -11.65277 -11.56084 -11.37290 -11.14691 -10.89959 -10.85801 -10.77577 -10.62300 -10.46006 -10.45013 -10.27149 -10.15926 -10.08680 -10.07258 -9.75046 -9.66562 -9.43956 -8.64363 -8.55231 -6.82072 -5.77138 -3.13497 2.28668 2.81660 3.14319 3.35597 3.38726 3.43508 3.44442 4.24842 4.32261 4.35178 4.46660 4.77611 4.80849 4.83772 4.97370 5.07673 5.17477 5.19910 5.28936 5.35180 5.42250 5.51698 5.54267 5.59473 5.62581 5.73787 5.75949 5.80331 5.81534 5.86553 5.95789 6.04548 6.05869 6.19754 6.22414 6.32177 6.38196 6.40977 6.46510 6.57247 6.67161 6.75160 6.92724 6.95144 7.15321 7.49360 7.59648 7.75851 7.78191 7.89421 8.24751 8.45724 9.16420 9.77522 10.45518 11.34810 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002298 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.689959 B =12179.340906 C =12466.618530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.137 3.863 6 H 0.093 0.907 7 N -0.714 5.714 8 C 0.515 3.485 9 O -0.542 6.542 10 C -0.109 4.109 11 C -0.098 4.098 12 C -0.099 4.099 13 C -0.110 4.110 14 C 0.521 3.479 15 N -0.858 5.858 16 O -0.543 6.543 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.155 4.155 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.228 4.228 23 H 0.075 0.925 24 C -0.004 4.004 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.402 0.598 43 H 0.400 0.600 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.073 0.927 51 H 0.027 0.973 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.024 13.864 -2.021 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.052 3.948 4 H 0.052 0.948 5 C 0.033 3.967 6 H 0.111 0.889 7 N -0.364 5.364 8 C 0.301 3.699 9 O -0.419 6.419 10 C -0.130 4.130 11 C -0.136 4.136 12 C -0.137 4.137 13 C -0.132 4.132 14 C 0.306 3.694 15 N -0.421 5.421 16 O -0.419 6.419 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.195 4.195 20 C 0.049 3.951 21 N -0.319 5.319 22 C -0.356 4.356 23 H 0.092 0.908 24 C -0.201 4.201 25 N -0.563 5.563 26 Si 0.740 3.260 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.230 0.770 43 H 0.230 0.770 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.091 0.909 51 H 0.045 0.955 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.203 13.034 -2.991 22.588 hybrid contribution 0.696 0.184 1.348 1.528 sum -17.508 13.218 -1.642 21.998 Atomic orbital electron populations 1.21763 0.97269 1.00463 1.00879 1.22007 0.93563 0.99203 1.02354 1.21086 0.87020 0.93344 0.93306 0.94836 1.22096 0.83549 0.92458 0.98632 0.88880 1.46104 1.26874 1.52019 1.11382 1.20523 0.83968 0.80856 0.84581 1.90694 1.73541 1.53188 1.24523 1.21389 0.95607 0.95825 1.00177 1.21355 0.95939 1.00742 0.95588 1.21381 0.97460 0.92680 1.02176 1.21423 0.95029 0.96933 0.99770 1.20773 0.91072 0.82113 0.75420 1.43939 1.12856 1.15273 1.70052 1.90748 1.27600 1.73211 1.50384 1.21523 0.96961 1.00521 0.95506 1.21522 0.97345 0.93836 1.02018 1.23401 0.96862 0.99006 1.00217 1.21422 0.93119 0.92910 0.87679 1.44446 0.98399 1.68386 1.20638 1.18928 0.89919 1.35944 0.90815 0.90751 1.24911 0.97257 1.00927 0.96965 1.69929 1.10660 1.52808 1.22867 0.86163 0.79682 0.78902 0.81258 1.21518 1.21693 1.20657 0.93319 0.93732 0.93500 0.92409 0.91787 0.76972 0.88556 0.90666 0.91000 0.90892 0.91073 0.88176 0.76990 0.77005 0.90978 0.91128 0.90695 0.90852 0.92036 0.92122 0.90886 0.95456 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.58 37.16 0.36 -1.78 16 2 C -0.13 -2.42 5.41 -26.74 -0.14 -2.56 16 3 C 0.16 3.10 2.94 -66.95 -0.20 2.90 16 4 H 0.03 0.63 7.72 -51.93 -0.40 0.23 16 5 C 0.14 2.38 2.02 -66.09 -0.13 2.25 16 6 H 0.09 1.80 7.18 -51.93 -0.37 1.43 16 7 N -0.71 -9.53 4.81 -52.03 -0.25 -9.78 16 8 C 0.52 6.90 7.15 -10.98 -0.08 6.82 16 9 O -0.54 -9.53 15.63 5.56 0.09 -9.44 16 10 C -0.11 -1.01 2.53 -91.77 -0.23 -1.24 16 11 C -0.10 -0.94 4.49 -26.73 -0.12 -1.06 16 12 C -0.10 -0.84 4.49 -26.73 -0.12 -0.96 16 13 C -0.11 -0.74 2.53 -91.78 -0.23 -0.98 16 14 C 0.52 4.26 7.42 -10.99 -0.08 4.18 16 15 N -0.86 -3.82 8.77 31.22 0.27 -3.55 16 16 O -0.54 -6.88 16.82 5.56 0.09 -6.78 16 17 C -0.11 -0.60 5.10 -26.73 -0.14 -0.73 16 18 C -0.11 -0.78 5.10 -26.73 -0.14 -0.91 16 19 C -0.16 -2.93 6.77 -24.59 -0.17 -3.10 16 20 C 0.17 4.12 5.41 -2.53 -0.01 4.11 16 21 N -0.59 -14.38 3.13 -162.58 -0.51 -14.89 16 22 C -0.23 -6.07 9.75 -15.06 -0.15 -6.21 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 25 N -0.92 -26.31 10.57 55.49 0.59 -25.72 16 26 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.06 1.26 7.90 -51.93 -0.41 0.85 16 35 H 0.40 4.36 7.78 -40.82 -0.32 4.05 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.40 0.71 8.25 -40.82 -0.34 0.37 16 43 H 0.40 1.51 8.93 -40.82 -0.36 1.15 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.26 7.56 -51.93 -0.39 -0.13 16 46 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 51 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 52 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 403.78 15.07 6.08 6.08 Total: -1.00 -33.76 403.78 -9.51 -43.28 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -9.18 Total: 3.74 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.68 Total: 0.53 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.10 Total: -53.95 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.18 Total: -16.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.76 -9.51 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087635403.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.716 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds