Wall clock time and date at job start Tue Mar 31 2020 20:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46999 * 2 1 4 4 H 1.08998 * 109.87459 * 55.81302 * 3 2 1 5 5 C 1.54328 * 109.88668 * 294.79036 * 3 2 1 6 6 H 1.09002 * 110.71440 * 336.93773 * 5 3 2 7 7 N 1.46497 * 110.71395 * 100.02681 * 5 3 2 8 8 C 1.34785 * 119.99611 * 204.99840 * 7 5 3 9 9 O 1.21275 * 120.00024 * 0.02562 * 8 7 5 10 10 C 1.50698 * 119.99669 * 180.02562 * 8 7 5 11 11 H 1.08997 * 109.52726 * 300.08013 * 10 8 7 12 12 C 1.53041 * 109.49346 * 180.02562 * 10 8 7 13 13 C 1.53044 * 109.52757 * 178.67533 * 12 10 8 14 14 C 1.53199 * 109.30845 * 61.37281 * 13 12 10 15 15 N 1.46928 * 108.77717 * 305.36588 * 14 13 12 16 16 C 1.34776 * 120.62884 * 233.59024 * 15 14 13 17 17 C 1.50700 * 120.00349 * 359.97438 * 16 15 14 18 18 O 1.21285 * 119.99333 * 180.02562 * 16 15 14 19 19 C 1.46921 * 118.73733 * 53.60635 * 15 14 13 20 20 C 1.55156 * 102.94328 * 218.39302 * 5 3 2 21 21 C 1.54909 * 101.58428 * 35.50203 * 20 5 3 22 22 N 1.47024 * 109.87955 * 176.98494 * 3 2 1 23 23 C 1.36942 * 125.65075 * 298.32238 * 22 3 2 24 24 H 1.07995 * 119.99575 * 345.36647 * 23 22 3 25 25 C 1.38810 * 119.99916 * 165.36224 * 23 22 3 26 26 N 1.31619 * 120.00293 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99808 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46952 * 90.00048 * 27 25 23 29 29 H 1.48501 * 109.46953 * 210.00258 * 27 25 23 30 30 H 1.48505 * 109.46966 * 329.99807 * 27 25 23 31 31 H 1.08991 * 109.47311 * 185.57785 * 1 2 3 32 32 H 1.09004 * 109.47352 * 305.58012 * 1 2 3 33 33 H 1.09006 * 109.46774 * 65.57433 * 1 2 3 34 34 H 1.08998 * 109.47038 * 240.00196 * 2 1 3 35 35 H 1.08994 * 109.47529 * 120.00119 * 2 1 3 36 36 H 0.96997 * 120.00647 * 25.00574 * 7 5 3 37 37 H 1.08999 * 109.45897 * 58.66847 * 12 10 8 38 38 H 1.09000 * 109.46478 * 298.69181 * 12 10 8 39 39 H 1.08993 * 109.49861 * 181.32274 * 13 12 10 40 40 H 1.09002 * 109.49913 * 301.42592 * 13 12 10 41 41 H 1.09000 * 109.58320 * 65.15590 * 14 13 12 42 42 H 1.09004 * 109.58694 * 185.43836 * 14 13 12 43 43 H 1.08999 * 109.46777 * 90.00061 * 17 16 15 44 44 H 1.08996 * 109.46896 * 210.00514 * 17 16 15 45 45 H 1.08999 * 109.46978 * 330.00225 * 17 16 15 46 46 H 1.09000 * 109.58804 * 66.17932 * 19 15 14 47 47 H 1.09001 * 109.58662 * 186.46224 * 19 15 14 48 48 H 1.09001 * 110.99981 * 153.58068 * 20 5 3 49 49 H 1.08993 * 111.00252 * 277.42380 * 20 5 3 50 50 H 1.08995 * 110.36499 * 204.14690 * 21 20 5 51 51 H 1.09005 * 110.36460 * 81.82771 * 21 20 5 52 52 H 0.96997 * 120.00109 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6204 1.9838 0.8479 5 6 1.6412 2.1403 -1.3175 6 1 1.4633 1.4066 -2.1038 7 7 0.4593 2.9830 -1.1204 8 6 -0.3450 3.2703 -2.1632 9 8 -0.0903 2.8308 -3.2644 10 6 -1.5605 4.1377 -1.9606 11 1 -2.2259 3.6689 -1.2357 12 6 -2.2950 4.3069 -3.2925 13 6 -3.5476 5.1604 -3.0812 14 6 -3.1365 6.5471 -2.5762 15 7 -2.3063 6.3859 -1.3748 16 6 -2.6208 7.0271 -0.2318 17 6 -3.8335 7.9201 -0.1778 18 8 -1.9271 6.8862 0.7531 19 6 -1.1267 5.5128 -1.4431 20 6 2.8861 3.0076 -1.6420 21 6 4.0371 2.0989 -1.1429 22 7 3.5084 1.4537 0.0727 23 6 4.2605 0.9490 1.0999 24 1 3.7943 0.7124 2.0448 25 6 5.6220 0.7417 0.9263 26 7 6.1902 1.0305 -0.2252 27 14 6.6478 0.0526 2.3272 28 1 6.6639 -1.4300 2.2462 29 1 8.0363 0.5692 2.2246 30 1 6.0586 0.4712 3.6246 31 1 -0.3633 -1.0227 0.0999 32 1 -0.3634 0.5979 0.8358 33 1 -0.3633 0.4250 -0.9358 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.2554 3.3344 -0.2396 37 1 -2.5831 3.3278 -3.6752 38 1 -1.6376 4.7981 -4.0100 39 1 -4.0828 5.2610 -4.0253 40 1 -4.1939 4.6821 -2.3452 41 1 -2.5656 7.0627 -3.3485 42 1 -4.0273 7.1261 -2.3324 43 1 -4.7019 7.3354 0.1255 44 1 -3.6640 8.7198 0.5432 45 1 -4.0116 8.3509 -1.1630 46 1 -0.3918 5.9440 -2.1229 47 1 -0.6897 5.4105 -0.4498 48 1 2.9677 3.1884 -2.7138 49 1 2.8624 3.9470 -1.0897 50 1 4.9160 2.6972 -0.9032 51 1 4.2814 1.3486 -1.8949 52 1 7.1417 0.8859 -0.3463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087648079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:26 Heat of formation + Delta-G solvation = -80.413066 kcal Electronic energy + Delta-G solvation = -30850.310906 eV Core-core repulsion = 26848.891816 eV Total energy + Delta-G solvation = -4001.419090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67012 -40.73073 -39.45355 -38.00849 -35.66003 -34.40706 -34.11073 -33.51999 -32.48264 -30.88556 -30.29507 -28.15368 -26.56603 -26.07248 -25.01212 -23.68099 -22.55782 -22.02286 -21.53597 -20.73728 -19.98597 -18.78600 -18.37712 -17.79988 -17.32794 -17.09042 -16.72825 -16.41462 -15.96603 -15.80054 -15.56746 -15.36518 -15.06122 -14.84170 -14.64830 -14.40504 -14.22806 -14.18098 -13.78180 -13.65152 -13.57708 -13.25700 -13.14850 -12.95457 -12.89180 -12.74297 -12.64220 -12.47670 -12.24261 -12.07130 -12.00286 -11.95603 -11.92950 -11.83013 -11.63130 -11.59595 -11.38365 -11.00928 -10.73345 -10.66802 -10.00745 -9.71526 -8.84754 -7.87287 -5.25380 1.45514 1.46966 1.49697 1.55566 1.65658 1.96700 2.18296 2.50191 3.32389 3.50366 3.54276 3.68826 3.77614 3.82900 3.87245 3.90629 4.06338 4.14397 4.17972 4.24220 4.34102 4.38609 4.47348 4.48622 4.58049 4.61717 4.62364 4.68974 4.72463 4.74102 4.81422 4.85577 4.93396 4.99018 5.03574 5.12833 5.15836 5.17184 5.22295 5.27967 5.41155 5.43645 5.46637 5.47362 5.55826 5.64285 5.69381 6.21706 6.41928 6.52851 7.07479 7.15942 7.21422 7.74811 8.42104 9.24059 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002730 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.493451 B =10254.333006 C =10814.420713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.157 3.843 4 H 0.046 0.954 5 C 0.157 3.843 6 H 0.080 0.920 7 N -0.704 5.704 8 C 0.521 3.479 9 O -0.574 6.574 10 C -0.107 4.107 11 H 0.113 0.887 12 C -0.100 4.100 13 C -0.126 4.126 14 C 0.096 3.904 15 N -0.609 5.609 16 C 0.502 3.498 17 C -0.167 4.167 18 O -0.601 6.601 19 C 0.122 3.878 20 C -0.141 4.141 21 C 0.183 3.817 22 N -0.613 5.613 23 C -0.234 4.234 24 H 0.080 0.920 25 C -0.062 4.062 26 N -0.949 5.949 27 Si 0.975 3.025 28 H -0.287 1.287 29 H -0.295 1.295 30 H -0.268 1.268 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.409 0.591 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.040 0.960 51 H -0.005 1.005 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.859 13.034 -5.519 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C 0.050 3.950 4 H 0.064 0.936 5 C 0.051 3.949 6 H 0.098 0.902 7 N -0.355 5.355 8 C 0.308 3.692 9 O -0.453 6.453 10 C -0.129 4.129 11 H 0.131 0.869 12 C -0.138 4.138 13 C -0.164 4.164 14 C -0.025 4.025 15 N -0.342 5.342 16 C 0.294 3.706 17 C -0.226 4.226 18 O -0.482 6.482 19 C -0.002 4.002 20 C -0.181 4.181 21 C 0.057 3.943 22 N -0.338 5.338 23 C -0.363 4.363 24 H 0.098 0.902 25 C -0.255 4.255 26 N -0.597 5.597 27 Si 0.804 3.196 28 H -0.214 1.214 29 H -0.222 1.222 30 H -0.192 1.192 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.245 0.755 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.142 0.858 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.131 0.869 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.058 0.942 51 H 0.013 0.987 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -26.120 12.624 -5.740 29.573 hybrid contribution 1.604 -0.741 0.915 1.990 sum -24.516 11.883 -4.825 27.668 Atomic orbital electron populations 1.21639 0.93867 1.01934 1.01602 1.21887 0.96441 0.97579 1.00574 1.21263 0.84461 0.94607 0.94636 0.93606 1.21642 0.84181 0.92019 0.97079 0.90151 1.45988 1.25716 1.51344 1.12422 1.20941 0.84140 0.80487 0.83676 1.90689 1.74249 1.54587 1.25747 1.21654 0.94560 0.94814 1.01842 0.86944 1.21359 0.97107 1.01388 0.93951 1.21935 0.96467 0.94590 1.03432 1.22205 0.96135 0.98293 0.85850 1.48265 1.27506 1.45883 1.12509 1.21740 0.87296 0.80244 0.81347 1.22003 0.94709 0.99506 1.06372 1.90729 1.54803 1.66000 1.36697 1.21331 0.88245 0.88432 1.02222 1.23227 0.95710 0.98620 1.00524 1.21124 0.93804 0.92295 0.87067 1.44676 1.00517 1.68443 1.20142 1.19291 0.90459 1.34867 0.91675 0.90207 1.25712 0.98517 1.01939 0.99370 1.70137 1.10369 1.54372 1.24829 0.85130 0.77653 0.77867 0.78998 1.21379 1.22194 1.19243 0.92096 0.91842 0.93231 0.94453 0.93303 0.75458 0.91523 0.91908 0.87741 0.90653 0.90226 0.85776 0.86841 0.89180 0.86856 0.91320 0.90068 0.91329 0.91114 0.94176 0.98683 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.58 71.98 0.69 -3.06 16 2 C -0.13 -4.72 5.41 30.59 0.17 -4.55 16 3 C 0.16 6.34 2.94 45.34 0.13 6.47 16 4 H 0.05 1.78 7.71 -2.39 -0.02 1.76 16 5 C 0.16 5.67 2.02 46.18 0.09 5.76 16 6 H 0.08 3.19 7.18 -2.39 -0.02 3.18 16 7 N -0.70 -19.66 4.82 -436.91 -2.11 -21.77 16 8 C 0.52 14.01 7.15 87.66 0.63 14.64 16 9 O -0.57 -19.84 15.63 -3.01 -0.05 -19.89 16 10 C -0.11 -1.97 2.68 -11.46 -0.03 -2.01 16 11 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 12 C -0.10 -1.53 4.46 30.62 0.14 -1.40 16 13 C -0.13 -0.92 6.08 30.68 0.19 -0.73 16 14 C 0.10 0.62 6.21 86.36 0.54 1.16 16 15 N -0.61 -8.85 2.97 -818.89 -2.43 -11.29 16 16 C 0.50 8.91 7.81 87.66 0.68 9.59 16 17 C -0.17 -1.18 9.46 71.24 0.67 -0.51 16 18 O -0.60 -17.38 16.51 -3.05 -0.05 -17.43 16 19 C 0.12 2.33 5.57 86.36 0.48 2.81 16 20 C -0.14 -5.66 6.77 31.99 0.22 -5.44 16 21 C 0.18 9.34 5.41 86.85 0.47 9.81 16 22 N -0.61 -31.45 3.13 -668.24 -2.09 -33.54 16 23 C -0.23 -13.05 9.75 84.03 0.82 -12.23 16 24 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 25 C -0.06 -3.55 5.47 84.86 0.46 -3.09 16 26 N -0.95 -57.82 10.58 21.65 0.23 -57.59 16 27 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 28 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 29 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 30 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.39 7.40 -2.38 -0.02 1.37 16 34 H 0.04 1.54 8.07 -2.39 -0.02 1.52 16 35 H 0.05 1.97 7.90 -2.39 -0.02 1.96 16 36 H 0.41 9.97 7.92 -92.71 -0.73 9.24 16 37 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 38 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 39 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.12 0.01 5.53 -2.38 -0.01 0.00 16 43 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.11 0.09 6.19 -2.39 -0.01 0.08 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.08 1.87 6.62 -2.39 -0.02 1.86 16 48 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 49 H 0.07 2.70 8.14 -2.39 -0.02 2.69 16 50 H 0.04 2.29 6.93 -2.39 -0.02 2.27 16 51 H 0.00 -0.28 8.06 -2.38 -0.02 -0.29 16 52 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -78.11 402.70 2.05 -76.07 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.17 Total: 19.96 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 6.35 Total: 17.22 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -6.40 Total: -124.19 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.10 Total: -37.31 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -78.11 2.05 -76.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087648079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.345 kcal (2) G-P(sol) polarization free energy of solvation -78.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds