Wall clock time and date at job start Tue Mar 31 2020 20:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46772 * 2 1 4 4 H 1.08994 * 109.87677 * 52.47282 * 3 2 1 5 5 C 1.54324 * 109.88582 * 291.28731 * 3 2 1 6 6 H 1.08994 * 110.72209 * 336.76201 * 5 3 2 7 7 N 1.46505 * 110.71505 * 100.02938 * 5 3 2 8 8 C 1.34772 * 120.00025 * 205.00163 * 7 5 3 9 9 O 1.21288 * 119.99960 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00456 * 180.02562 * 8 7 5 11 11 H 1.09005 * 109.49259 * 60.06448 * 10 8 7 12 12 C 1.53035 * 109.49976 * 180.15935 * 10 8 7 13 13 C 1.53042 * 109.53654 * 181.31586 * 12 10 8 14 14 C 1.53193 * 109.31424 * 298.63664 * 13 12 10 15 15 N 1.46927 * 108.77322 * 54.63462 * 14 13 12 16 16 C 1.34778 * 120.62898 * 126.41620 * 15 14 13 17 17 C 1.50703 * 119.99919 * 174.88231 * 16 15 14 18 18 O 1.21280 * 119.99815 * 354.88039 * 16 15 14 19 19 C 1.46920 * 118.74059 * 306.39139 * 15 14 13 20 20 C 1.55151 * 102.94313 * 218.39196 * 5 3 2 21 21 C 1.54911 * 101.58471 * 35.50581 * 20 5 3 22 22 N 1.47031 * 109.87750 * 173.48355 * 3 2 1 23 23 C 1.36931 * 125.64823 * 298.39528 * 22 3 2 24 24 H 1.08002 * 119.99810 * 344.43779 * 23 22 3 25 25 C 1.38816 * 120.00259 * 164.44819 * 23 22 3 26 26 N 1.31617 * 119.99621 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00445 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47203 * 59.99335 * 27 25 23 29 29 H 1.48491 * 109.47442 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.46935 * 299.99573 * 27 25 23 31 31 H 1.09000 * 109.46767 * 296.72117 * 1 2 3 32 32 H 1.08995 * 109.47253 * 56.72299 * 1 2 3 33 33 H 1.08999 * 109.46699 * 176.72022 * 1 2 3 34 34 H 1.08997 * 109.46964 * 120.00642 * 2 1 3 35 35 H 1.09002 * 109.46957 * 240.00084 * 2 1 3 36 36 H 0.97006 * 120.00078 * 25.00207 * 7 5 3 37 37 H 1.08998 * 109.46501 * 301.33591 * 12 10 8 38 38 H 1.09001 * 109.45807 * 61.29786 * 12 10 8 39 39 H 1.08998 * 109.49874 * 178.68792 * 13 12 10 40 40 H 1.08999 * 109.52493 * 58.60388 * 13 12 10 41 41 H 1.08995 * 109.58659 * 294.84809 * 14 13 12 42 42 H 1.08998 * 109.70661 * 174.49370 * 14 13 12 43 43 H 1.08996 * 109.47384 * 84.66808 * 17 16 15 44 44 H 1.09003 * 109.47061 * 204.66903 * 17 16 15 45 45 H 1.09000 * 109.47002 * 324.66479 * 17 16 15 46 46 H 1.09000 * 109.58720 * 293.82017 * 19 15 14 47 47 H 1.09002 * 109.59073 * 173.40071 * 19 15 14 48 48 H 1.09007 * 111.00468 * 277.42910 * 20 5 3 49 49 H 1.09004 * 111.00466 * 153.58084 * 20 5 3 50 50 H 1.09003 * 110.36598 * 204.15360 * 21 20 5 51 51 H 1.08992 * 110.45814 * 81.87283 * 21 20 5 52 52 H 0.96998 * 120.00372 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5748 2.0000 0.8129 5 6 1.7182 2.1130 -1.3522 6 1 1.5885 1.3637 -2.1330 7 7 0.5272 2.9589 -1.2407 8 6 -0.2154 3.2244 -2.3336 9 8 0.1019 2.7626 -3.4093 10 6 -1.4402 4.0951 -2.2191 11 1 -1.1530 5.0803 -1.8517 12 6 -2.0985 4.2338 -3.5937 13 6 -3.3237 5.1444 -3.4847 14 6 -4.3381 4.5163 -2.5239 15 7 -3.6713 4.2459 -1.2428 16 6 -4.1861 4.7141 -0.0885 17 6 -3.5567 4.3328 1.2266 18 8 -5.1558 5.4422 -0.1083 19 6 -2.4332 3.4550 -1.2439 20 6 2.9801 2.9743 -1.6220 21 6 4.0999 2.0766 -1.0391 22 7 3.5018 1.4560 0.1569 23 6 4.1932 0.9716 1.2350 24 1 3.6758 0.7668 2.1607 25 6 5.5592 0.7438 1.1383 26 7 6.1896 0.9930 0.0102 27 14 6.5025 0.0837 2.6092 28 1 5.9458 -1.2356 3.0029 29 1 7.9349 -0.0714 2.2497 30 1 6.3766 1.0327 3.7445 31 1 -0.3633 0.4621 0.9179 32 1 -0.3633 0.5638 -0.8591 33 1 -0.3633 -1.0260 -0.0588 34 1 1.8934 -0.5139 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 0.2733 3.3280 -0.3803 37 1 -1.3858 4.6664 -4.2958 38 1 -2.4072 3.2508 -3.9493 39 1 -3.7786 5.2616 -4.4683 40 1 -3.0198 6.1202 -3.1059 41 1 -4.7115 3.5831 -2.9456 42 1 -5.1689 5.2038 -2.3655 43 1 -2.7257 5.0050 1.4401 44 1 -4.2994 4.4096 2.0207 45 1 -3.1898 3.3079 1.1702 46 1 -2.6512 2.4353 -1.5612 47 1 -2.0055 3.4443 -0.2414 48 1 2.9252 3.9248 -1.0912 49 1 3.1234 3.1333 -2.6908 50 1 4.9640 2.6803 -0.7613 51 1 4.3885 1.3114 -1.7595 52 1 7.1439 0.8336 -0.0576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087648080.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:30 Heat of formation + Delta-G solvation = -60.260154 kcal Electronic energy + Delta-G solvation = -30999.654446 eV Core-core repulsion = 26999.109252 eV Total energy + Delta-G solvation = -4000.545194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.80735 -39.70119 -38.06834 -37.06149 -34.17373 -33.34610 -32.86120 -32.23760 -31.46715 -29.77219 -28.96342 -26.70238 -25.51434 -24.87800 -23.97056 -22.33782 -21.53249 -20.44860 -20.25214 -19.44710 -19.35238 -17.58635 -16.94183 -16.75566 -16.37381 -15.94159 -15.71289 -15.14768 -14.81848 -14.50828 -14.19632 -14.04702 -14.03202 -13.75340 -13.66625 -13.56794 -13.24084 -13.10376 -12.76999 -12.47172 -12.38427 -12.10572 -12.03010 -11.82347 -11.69192 -11.36010 -11.21816 -11.16961 -11.04254 -10.93142 -10.87499 -10.68371 -10.51902 -10.34416 -10.15147 -10.11333 -9.83569 -9.71448 -9.65401 -9.02977 -8.71217 -8.61172 -6.85162 -5.80518 -3.17298 2.27202 2.51939 2.74508 3.22832 3.35878 3.40911 3.41753 4.18400 4.22696 4.43260 4.49911 4.57740 4.66851 4.83331 4.89918 4.93503 4.99011 5.08234 5.15554 5.24317 5.30025 5.36307 5.44623 5.47890 5.49284 5.50257 5.60393 5.60764 5.68334 5.75409 5.78478 5.85578 5.98439 6.03605 6.11234 6.16506 6.23491 6.34228 6.39843 6.50031 6.61121 6.67582 6.89735 7.01296 7.08360 7.44715 7.55381 7.62744 7.73596 7.82296 8.21100 8.29862 9.12946 9.74093 10.42013 11.31585 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.002777 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.463760 B =10082.038821 C =10880.526782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.137 3.863 6 H 0.095 0.905 7 N -0.713 5.713 8 C 0.518 3.482 9 O -0.536 6.536 10 C -0.123 4.123 11 H 0.101 0.899 12 C -0.100 4.100 13 C -0.134 4.134 14 C 0.107 3.893 15 N -0.613 5.613 16 C 0.515 3.485 17 C -0.179 4.179 18 O -0.548 6.548 19 C 0.116 3.884 20 C -0.156 4.156 21 C 0.174 3.826 22 N -0.593 5.593 23 C -0.231 4.231 24 H 0.074 0.926 25 C -0.001 4.001 26 N -0.916 5.916 27 Si 0.910 3.090 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.396 0.604 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.071 0.929 51 H 0.029 0.971 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.571 6.281 -3.081 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.032 3.968 6 H 0.113 0.887 7 N -0.363 5.363 8 C 0.302 3.698 9 O -0.412 6.412 10 C -0.145 4.145 11 H 0.119 0.881 12 C -0.138 4.138 13 C -0.172 4.172 14 C -0.015 4.015 15 N -0.347 5.347 16 C 0.305 3.695 17 C -0.238 4.238 18 O -0.426 6.426 19 C -0.007 4.007 20 C -0.196 4.196 21 C 0.049 3.951 22 N -0.318 5.318 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.199 4.199 26 N -0.561 5.561 27 Si 0.740 3.260 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.230 0.770 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.111 0.889 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.047 0.953 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.600 6.273 -3.808 19.995 hybrid contribution 0.669 -0.313 1.144 1.362 sum -17.930 5.959 -2.664 19.082 Atomic orbital electron populations 1.21782 0.97376 1.00623 1.00741 1.22027 0.93532 0.99229 1.02461 1.21069 0.87454 0.93432 0.92725 0.94818 1.22139 0.83211 0.92503 0.98919 0.88704 1.46136 1.27961 1.51636 1.10581 1.20280 0.84030 0.81056 0.84395 1.90717 1.71400 1.51757 1.27306 1.21737 0.93681 1.00320 0.98797 0.88086 1.21335 0.96669 1.00939 0.94807 1.21942 0.96108 0.99381 0.99786 1.21655 0.95911 1.01147 0.82772 1.48140 1.25664 1.53872 1.07001 1.20869 0.83669 0.79206 0.85782 1.22000 1.03377 1.03723 0.94729 1.90708 1.27821 1.36578 1.87483 1.21723 0.83799 0.94997 1.00209 1.23418 0.96746 0.99075 1.00370 1.21410 0.92817 0.93206 0.87641 1.44430 0.98636 1.69709 1.19028 1.18871 0.90505 1.37003 0.89552 0.90797 1.24925 0.97126 1.00750 0.97068 1.69912 1.08903 1.52918 1.24407 0.86245 0.79025 0.79016 0.81721 1.21057 1.21595 1.21102 0.93470 0.93278 0.93693 0.91565 0.92504 0.76978 0.90513 0.90803 0.90194 0.91389 0.91304 0.88866 0.88599 0.88761 0.89590 0.90302 0.88861 0.92073 0.91963 0.91042 0.95323 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.82 37.16 0.36 -1.56 16 2 C -0.13 -2.29 5.45 -26.73 -0.15 -2.44 16 3 C 0.16 2.95 2.90 -66.95 -0.19 2.75 16 4 H 0.03 0.59 7.72 -51.93 -0.40 0.19 16 5 C 0.14 2.23 2.11 -66.10 -0.14 2.09 16 6 H 0.09 1.73 7.15 -51.93 -0.37 1.35 16 7 N -0.71 -8.64 4.55 -52.03 -0.24 -8.88 16 8 C 0.52 6.34 7.16 -10.99 -0.08 6.26 16 9 O -0.54 -8.77 15.63 5.55 0.09 -8.68 16 10 C -0.12 -1.07 2.68 -91.65 -0.25 -1.31 16 11 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.10 -0.87 4.46 -26.69 -0.12 -0.99 16 13 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 14 C 0.11 0.86 6.44 -3.71 -0.02 0.84 16 15 N -0.61 -5.12 2.97 -172.77 -0.51 -5.64 16 16 C 0.52 5.04 7.80 -10.98 -0.09 4.96 16 17 C -0.18 -1.13 9.11 36.01 0.33 -0.80 16 18 O -0.55 -7.56 16.52 5.56 0.09 -7.47 16 19 C 0.12 0.84 5.29 -3.71 -0.02 0.82 16 20 C -0.16 -2.86 6.77 -24.58 -0.17 -3.03 16 21 C 0.17 4.04 5.40 -2.53 -0.01 4.02 16 22 N -0.59 -13.95 3.13 -162.57 -0.51 -14.46 16 23 C -0.23 -6.02 9.68 -15.06 -0.15 -6.17 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 26 N -0.92 -25.92 10.61 55.49 0.59 -25.33 16 27 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.62 6.97 -51.93 -0.36 0.25 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.26 7.80 -51.93 -0.41 0.85 16 35 H 0.06 1.07 7.98 -51.93 -0.41 0.65 16 36 H 0.40 3.80 7.91 -40.82 -0.32 3.47 16 37 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.86 7.00 -51.93 -0.36 0.49 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.41 6.78 -51.93 -0.35 0.05 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.51 5.43 -51.93 -0.28 0.23 16 48 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.07 1.85 7.00 -51.93 -0.36 1.48 16 51 H 0.03 0.73 8.03 -51.93 -0.42 0.31 16 52 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 402.55 15.07 6.07 6.07 Total: -1.00 -32.58 402.55 -9.48 -42.06 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -9.09 Total: 1.95 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.94 Total: 4.17 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.67 Total: -54.31 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.18 Total: -16.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.58 -9.48 -42.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087648080.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.199 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds