Wall clock time and date at job start Tue Mar 31 2020 20:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47315 * 2 1 4 4 H 1.08996 * 109.86999 * 55.80557 * 3 2 1 5 5 C 1.54331 * 109.88147 * 294.79236 * 3 2 1 6 6 H 1.08997 * 110.71969 * 336.92850 * 5 3 2 7 7 N 1.46502 * 110.72054 * 100.02885 * 5 3 2 8 8 C 1.34773 * 119.99730 * 205.00217 * 7 5 3 9 9 O 1.21280 * 120.00129 * 359.97438 * 8 7 5 10 10 C 1.50706 * 119.99980 * 179.97438 * 8 7 5 11 11 H 1.08995 * 110.21159 * 60.47119 * 10 8 7 12 12 C 1.54477 * 110.24432 * 298.54553 * 10 8 7 13 13 C 1.54628 * 101.79545 * 266.30610 * 12 10 8 14 14 C 1.51337 * 104.16878 * 335.24958 * 13 12 10 15 15 O 1.21292 * 124.92606 * 196.24908 * 14 13 12 16 16 N 1.34413 * 110.13392 * 16.19964 * 14 13 12 17 17 C 1.46501 * 124.35515 * 180.41884 * 16 14 13 18 18 C 1.52999 * 109.46793 * 300.02666 * 17 16 14 19 19 C 1.52993 * 109.46862 * 60.02315 * 17 16 14 20 20 C 1.55152 * 102.94050 * 218.39034 * 5 3 2 21 21 C 1.54912 * 101.58397 * 35.49921 * 20 5 3 22 22 N 1.47013 * 109.88415 * 176.98449 * 3 2 1 23 23 C 1.36938 * 125.64790 * 298.39498 * 22 3 2 24 24 H 1.08003 * 119.99843 * 345.38457 * 23 22 3 25 25 C 1.38814 * 120.00136 * 165.38143 * 23 22 3 26 26 N 1.31612 * 120.00131 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99895 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46905 * 60.00139 * 27 25 23 29 29 H 1.48500 * 109.46953 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.46917 * 300.00409 * 27 25 23 31 31 H 1.08999 * 109.47565 * 185.58529 * 1 2 3 32 32 H 1.09007 * 109.46869 * 305.58511 * 1 2 3 33 33 H 1.09001 * 109.47189 * 65.58033 * 1 2 3 34 34 H 1.09006 * 109.46375 * 240.00191 * 2 1 3 35 35 H 1.08993 * 109.47066 * 120.00539 * 2 1 3 36 36 H 0.97003 * 120.00061 * 24.99240 * 7 5 3 37 37 H 1.09001 * 110.97298 * 24.44291 * 12 10 8 38 38 H 1.09001 * 110.97065 * 148.17430 * 12 10 8 39 39 H 1.09005 * 110.48496 * 93.90048 * 13 12 10 40 40 H 1.08998 * 110.48639 * 216.54335 * 13 12 10 41 41 H 1.09001 * 109.46825 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.47599 * 59.99685 * 18 17 16 43 43 H 1.09000 * 109.47106 * 179.97438 * 18 17 16 44 44 H 1.09004 * 109.46886 * 299.99571 * 18 17 16 45 45 H 1.09004 * 109.47488 * 60.00655 * 19 17 16 46 46 H 1.08999 * 109.47079 * 179.97438 * 19 17 16 47 47 H 1.08998 * 109.47781 * 300.00044 * 19 17 16 48 48 H 1.08998 * 111.00385 * 153.57431 * 20 5 3 49 49 H 1.09007 * 111.00437 * 277.43036 * 20 5 3 50 50 H 1.08999 * 110.36681 * 204.14843 * 21 20 5 51 51 H 1.09003 * 110.45603 * 81.88016 * 21 20 5 52 52 H 0.96998 * 120.00243 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6205 1.9838 0.8479 5 6 1.6413 2.1402 -1.3176 6 1 1.4634 1.4066 -2.1039 7 7 0.4593 2.9831 -1.1206 8 6 -0.3448 3.2702 -2.1633 9 8 -0.0898 2.8312 -3.2647 10 6 -1.5610 4.1368 -1.9606 11 1 -1.2658 5.1208 -1.5964 12 6 -2.5340 3.4679 -0.9646 13 6 -3.4850 2.7051 -1.9157 14 6 -3.3933 3.4665 -3.2204 15 8 -4.1824 3.3717 -4.1367 16 7 -2.3112 4.2638 -3.2157 17 6 -1.9294 5.1458 -4.3213 18 6 -1.6914 4.3107 -5.5810 19 6 -3.0517 6.1526 -4.5814 20 6 2.8861 3.0075 -1.6420 21 6 4.0371 2.0988 -1.1428 22 7 3.5084 1.4536 0.0727 23 6 4.2605 0.9478 1.0992 24 1 3.7942 0.7096 2.0438 25 6 5.6221 0.7411 0.9257 26 7 6.1904 1.0317 -0.2253 27 14 6.6482 0.0517 2.3263 28 1 6.1282 -1.2856 2.7091 29 1 8.0620 -0.0728 1.8894 30 1 6.5699 0.9660 3.4938 31 1 -0.3634 -1.0227 0.1000 32 1 -0.3633 0.5981 0.8358 33 1 -0.3633 0.4249 -0.9357 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 0.2555 3.3344 -0.2397 37 1 -2.0055 2.7786 -0.3061 38 1 -3.0773 4.2163 -0.3876 39 1 -3.1472 1.6774 -2.0494 40 1 -4.5051 2.7254 -1.5323 41 1 -1.0154 5.6797 -4.0611 42 1 -2.6053 3.7768 -5.8411 43 1 -1.4077 4.9669 -6.4038 44 1 -0.8918 3.5934 -5.3956 45 1 -3.2213 6.7476 -3.6840 46 1 -2.7674 6.8091 -5.4037 47 1 -3.9657 5.6188 -4.8415 48 1 2.9678 3.1882 -2.7138 49 1 2.8625 3.9470 -1.0897 50 1 4.9161 2.6971 -0.9031 51 1 4.2833 1.3484 -1.8942 52 1 7.1420 0.8876 -0.3465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087699417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:33 Heat of formation + Delta-G solvation = -49.902756 kcal Electronic energy + Delta-G solvation = -31408.209891 eV Core-core repulsion = 27408.113827 eV Total energy + Delta-G solvation = -4000.096064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21804 -39.37805 -37.75862 -36.28071 -35.24295 -34.05975 -32.81533 -31.77741 -30.25421 -29.34235 -28.24488 -27.23434 -26.42521 -24.49530 -23.25508 -22.54743 -22.13483 -20.66705 -20.24504 -19.75779 -18.89373 -17.52705 -17.05532 -16.80278 -16.19118 -15.54638 -15.36532 -14.84105 -14.69357 -14.26129 -14.14890 -14.02187 -13.87312 -13.80643 -13.54921 -13.38802 -13.08817 -12.97987 -12.74413 -12.22855 -12.13020 -12.00183 -11.95498 -11.80602 -11.69741 -11.59616 -11.34088 -11.22731 -11.19271 -10.93459 -10.87303 -10.67755 -10.50992 -10.33631 -10.14913 -9.92891 -9.80126 -9.71786 -9.70289 -8.81824 -8.71752 -8.61674 -6.86083 -5.79984 -3.16730 2.41203 2.56803 2.68731 3.29307 3.36137 3.41071 3.41853 4.02009 4.12626 4.42052 4.47944 4.60523 4.78222 4.86995 4.92172 5.08183 5.16005 5.22976 5.30401 5.36015 5.45122 5.46490 5.47793 5.49674 5.56911 5.60149 5.67020 5.68729 5.74243 5.79392 5.87782 5.98992 6.02241 6.16249 6.20554 6.31756 6.34759 6.39876 6.48224 6.51706 6.60902 6.67663 6.89340 6.94982 7.09110 7.45228 7.54790 7.62113 7.73831 8.04034 8.21124 8.29690 9.13133 9.74294 10.41691 11.31823 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.002818 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.667056 B = 9933.678087 C =10614.287379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.139 3.861 6 H 0.094 0.906 7 N -0.710 5.710 8 C 0.498 3.502 9 O -0.525 6.525 10 C 0.111 3.889 11 H 0.113 0.887 12 C -0.123 4.123 13 C -0.158 4.158 14 C 0.525 3.475 15 O -0.529 6.529 16 N -0.590 5.590 17 C 0.158 3.842 18 C -0.168 4.168 19 C -0.166 4.166 20 C -0.156 4.156 21 C 0.174 3.826 22 N -0.593 5.593 23 C -0.230 4.230 24 H 0.075 0.925 25 C -0.002 4.002 26 N -0.916 5.916 27 Si 0.910 3.090 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.398 0.602 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.027 0.973 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.782 8.917 -1.745 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.112 0.888 7 N -0.362 5.362 8 C 0.281 3.719 9 O -0.400 6.400 10 C 0.002 3.998 11 H 0.131 0.869 12 C -0.161 4.161 13 C -0.198 4.198 14 C 0.313 3.687 15 O -0.405 6.405 16 N -0.324 5.324 17 C 0.057 3.943 18 C -0.226 4.226 19 C -0.224 4.224 20 C -0.195 4.195 21 C 0.049 3.951 22 N -0.318 5.318 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.199 4.199 26 N -0.562 5.562 27 Si 0.740 3.260 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.045 0.955 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.732 8.554 -3.090 19.928 hybrid contribution 0.762 -0.281 1.191 1.442 sum -16.970 8.272 -1.899 18.974 Atomic orbital electron populations 1.21771 0.97318 1.00549 1.00741 1.22020 0.93544 0.99225 1.02420 1.21072 0.87102 0.93319 0.93157 0.94770 1.22123 0.83283 0.92370 0.98804 0.88806 1.46066 1.26834 1.52060 1.11209 1.20816 0.84203 0.81667 0.85167 1.90711 1.73008 1.52073 1.24219 1.21648 0.91733 1.00522 0.85876 0.86936 1.22651 0.96526 1.00376 0.96575 1.22392 1.02418 1.01018 0.93950 1.20767 0.80266 0.78837 0.88843 1.90691 1.44050 1.65582 1.40192 1.48086 1.25001 1.42656 1.16611 1.20904 0.97475 0.89850 0.86096 1.22183 1.03610 1.00846 0.95979 1.22192 0.99841 0.98643 1.01712 1.23410 0.96823 0.99047 1.00251 1.21426 0.93113 0.92900 0.87680 1.44428 0.98349 1.68369 1.20663 1.18883 0.89922 1.36209 0.90851 0.90757 1.24909 0.97249 1.00813 0.96942 1.69909 1.10760 1.52651 1.22899 0.86243 0.79433 0.79089 0.81223 1.21066 1.21593 1.21115 0.93688 0.93428 0.93408 0.92433 0.91719 0.76817 0.88383 0.88705 0.87637 0.87722 0.89754 0.91524 0.92106 0.90658 0.92667 0.91444 0.91070 0.92036 0.92050 0.90836 0.95451 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.58 37.16 0.36 -1.59 16 2 C -0.13 -2.31 5.41 -26.73 -0.14 -2.45 16 3 C 0.16 2.96 2.94 -66.95 -0.20 2.76 16 4 H 0.03 0.60 7.71 -51.93 -0.40 0.20 16 5 C 0.14 2.26 2.02 -66.09 -0.13 2.13 16 6 H 0.09 1.73 7.18 -51.93 -0.37 1.35 16 7 N -0.71 -8.50 4.62 -52.03 -0.24 -8.74 16 8 C 0.50 6.13 7.17 -10.98 -0.08 6.05 16 9 O -0.52 -8.66 14.65 5.56 0.08 -8.58 16 10 C 0.11 0.97 3.45 -68.16 -0.24 0.74 16 11 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 12 C -0.12 -0.78 6.65 -25.10 -0.17 -0.94 16 13 C -0.16 -1.34 6.86 -26.72 -0.18 -1.53 16 14 C 0.52 6.42 7.41 -10.84 -0.08 6.34 16 15 O -0.53 -8.22 15.12 5.55 0.08 -8.14 16 16 N -0.59 -6.45 2.04 -158.65 -0.32 -6.77 16 17 C 0.16 1.70 3.28 -67.93 -0.22 1.48 16 18 C -0.17 -2.06 9.19 37.16 0.34 -1.72 16 19 C -0.17 -1.54 9.20 37.15 0.34 -1.20 16 20 C -0.16 -2.83 6.77 -24.58 -0.17 -3.00 16 21 C 0.17 4.03 5.41 -2.53 -0.01 4.01 16 22 N -0.59 -13.97 3.13 -162.58 -0.51 -14.48 16 23 C -0.23 -6.02 9.75 -15.06 -0.15 -6.16 16 24 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 25 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 26 N -0.92 -25.97 10.57 55.49 0.59 -25.38 16 27 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 30 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.63 7.40 -51.93 -0.38 0.25 16 34 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.06 1.23 7.90 -51.93 -0.41 0.82 16 36 H 0.40 3.70 8.15 -40.82 -0.33 3.37 16 37 H 0.10 0.55 7.47 -51.93 -0.39 0.16 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 42 H 0.07 0.93 6.77 -51.93 -0.35 0.58 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.10 6.78 -51.93 -0.35 0.75 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.81 6.80 -51.93 -0.35 0.45 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.07 1.90 6.93 -51.93 -0.36 1.54 16 51 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 52 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 404.55 15.07 6.10 6.10 Total: -1.00 -32.50 404.55 -9.23 -41.74 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -9.16 Total: 3.23 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.82 Total: 4.78 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.49 Total: -55.38 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.17 Total: -16.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.50 -9.23 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087699417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.167 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds