Wall clock time and date at job start Tue Mar 31 2020 20:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47315 * 2 1 4 4 H 1.08996 * 109.86999 * 55.80557 * 3 2 1 5 5 C 1.54331 * 109.88147 * 294.79236 * 3 2 1 6 6 H 1.08997 * 110.71969 * 336.92850 * 5 3 2 7 7 N 1.46502 * 110.72054 * 100.02885 * 5 3 2 8 8 C 1.34773 * 119.99730 * 205.00217 * 7 5 3 9 9 O 1.21280 * 120.00129 * 359.97438 * 8 7 5 10 10 C 1.50706 * 119.99980 * 179.97438 * 8 7 5 11 11 H 1.08995 * 110.21159 * 60.47119 * 10 8 7 12 12 C 1.54477 * 110.24432 * 298.54553 * 10 8 7 13 13 C 1.54628 * 101.79545 * 266.30610 * 12 10 8 14 14 C 1.51337 * 104.16878 * 335.24958 * 13 12 10 15 15 O 1.21292 * 124.92606 * 196.24908 * 14 13 12 16 16 N 1.34413 * 110.13392 * 16.19964 * 14 13 12 17 17 C 1.46501 * 124.35515 * 180.41884 * 16 14 13 18 18 C 1.52999 * 109.46793 * 300.02666 * 17 16 14 19 19 C 1.52993 * 109.46862 * 60.02315 * 17 16 14 20 20 C 1.55152 * 102.94050 * 218.39034 * 5 3 2 21 21 C 1.54912 * 101.58397 * 35.49921 * 20 5 3 22 22 N 1.47013 * 109.88415 * 176.98449 * 3 2 1 23 23 C 1.36938 * 125.64790 * 298.39498 * 22 3 2 24 24 H 1.08003 * 119.99843 * 345.38457 * 23 22 3 25 25 C 1.38814 * 120.00136 * 165.38143 * 23 22 3 26 26 N 1.31612 * 120.00131 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99895 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46905 * 60.00139 * 27 25 23 29 29 H 1.48500 * 109.46953 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.46917 * 300.00409 * 27 25 23 31 31 H 1.08999 * 109.47565 * 185.58529 * 1 2 3 32 32 H 1.09007 * 109.46869 * 305.58511 * 1 2 3 33 33 H 1.09001 * 109.47189 * 65.58033 * 1 2 3 34 34 H 1.09006 * 109.46375 * 240.00191 * 2 1 3 35 35 H 1.08993 * 109.47066 * 120.00539 * 2 1 3 36 36 H 0.97003 * 120.00061 * 24.99240 * 7 5 3 37 37 H 1.09001 * 110.97298 * 24.44291 * 12 10 8 38 38 H 1.09001 * 110.97065 * 148.17430 * 12 10 8 39 39 H 1.09005 * 110.48496 * 93.90048 * 13 12 10 40 40 H 1.08998 * 110.48639 * 216.54335 * 13 12 10 41 41 H 1.09001 * 109.46825 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.47599 * 59.99685 * 18 17 16 43 43 H 1.09000 * 109.47106 * 179.97438 * 18 17 16 44 44 H 1.09004 * 109.46886 * 299.99571 * 18 17 16 45 45 H 1.09004 * 109.47488 * 60.00655 * 19 17 16 46 46 H 1.08999 * 109.47079 * 179.97438 * 19 17 16 47 47 H 1.08998 * 109.47781 * 300.00044 * 19 17 16 48 48 H 1.08998 * 111.00385 * 153.57431 * 20 5 3 49 49 H 1.09007 * 111.00437 * 277.43036 * 20 5 3 50 50 H 1.08999 * 110.36681 * 204.14843 * 21 20 5 51 51 H 1.09003 * 110.45603 * 81.88016 * 21 20 5 52 52 H 0.96998 * 120.00243 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6205 1.9838 0.8479 5 6 1.6413 2.1402 -1.3176 6 1 1.4634 1.4066 -2.1039 7 7 0.4593 2.9831 -1.1206 8 6 -0.3448 3.2702 -2.1633 9 8 -0.0898 2.8312 -3.2647 10 6 -1.5610 4.1368 -1.9606 11 1 -1.2658 5.1208 -1.5964 12 6 -2.5340 3.4679 -0.9646 13 6 -3.4850 2.7051 -1.9157 14 6 -3.3933 3.4665 -3.2204 15 8 -4.1824 3.3717 -4.1367 16 7 -2.3112 4.2638 -3.2157 17 6 -1.9294 5.1458 -4.3213 18 6 -1.6914 4.3107 -5.5810 19 6 -3.0517 6.1526 -4.5814 20 6 2.8861 3.0075 -1.6420 21 6 4.0371 2.0988 -1.1428 22 7 3.5084 1.4536 0.0727 23 6 4.2605 0.9478 1.0992 24 1 3.7942 0.7096 2.0438 25 6 5.6221 0.7411 0.9257 26 7 6.1904 1.0317 -0.2253 27 14 6.6482 0.0517 2.3263 28 1 6.1282 -1.2856 2.7091 29 1 8.0620 -0.0728 1.8894 30 1 6.5699 0.9660 3.4938 31 1 -0.3634 -1.0227 0.1000 32 1 -0.3633 0.5981 0.8358 33 1 -0.3633 0.4249 -0.9357 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 0.2555 3.3344 -0.2397 37 1 -2.0055 2.7786 -0.3061 38 1 -3.0773 4.2163 -0.3876 39 1 -3.1472 1.6774 -2.0494 40 1 -4.5051 2.7254 -1.5323 41 1 -1.0154 5.6797 -4.0611 42 1 -2.6053 3.7768 -5.8411 43 1 -1.4077 4.9669 -6.4038 44 1 -0.8918 3.5934 -5.3956 45 1 -3.2213 6.7476 -3.6840 46 1 -2.7674 6.8091 -5.4037 47 1 -3.9657 5.6188 -4.8415 48 1 2.9678 3.1882 -2.7138 49 1 2.8625 3.9470 -1.0897 50 1 4.9161 2.6971 -0.9031 51 1 4.2833 1.3484 -1.8942 52 1 7.1420 0.8876 -0.3465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087699417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:32 Heat of formation + Delta-G solvation = -70.685329 kcal Electronic energy + Delta-G solvation = -31409.111091 eV Core-core repulsion = 27408.113827 eV Total energy + Delta-G solvation = -4000.997264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.08376 -40.56938 -39.14359 -37.25651 -36.04144 -35.51557 -34.23149 -33.45410 -31.02969 -30.91520 -29.31770 -28.10057 -27.79201 -26.26674 -24.21066 -23.42838 -23.26235 -22.16452 -21.49661 -21.16095 -19.78472 -18.75218 -18.50520 -17.76783 -17.37963 -16.73132 -16.43701 -16.32535 -15.81604 -15.68426 -15.37587 -15.19016 -15.08100 -14.65013 -14.62596 -14.36108 -14.31197 -13.90944 -13.83763 -13.72356 -13.49910 -13.20417 -13.00431 -12.86147 -12.77023 -12.67132 -12.58423 -12.46134 -12.33659 -12.19736 -12.11044 -12.06166 -12.04043 -11.95489 -11.82200 -11.54111 -11.32399 -10.98816 -10.65345 -10.62807 -9.92371 -9.71189 -8.80411 -7.83720 -5.21333 1.48039 1.50481 1.51181 1.56887 1.63687 1.86811 2.30492 2.53805 3.31207 3.36477 3.50792 3.58130 3.81214 3.89112 3.92991 3.95529 4.01769 4.15445 4.22275 4.24392 4.31844 4.41284 4.45777 4.52048 4.65601 4.69492 4.69704 4.75154 4.79445 4.80469 4.89687 4.91273 4.93811 5.00496 5.05339 5.09925 5.19604 5.21956 5.25870 5.32113 5.38001 5.49761 5.53275 5.60451 5.64763 5.72537 5.74278 6.13148 6.25780 6.65610 7.11100 7.16593 7.34389 7.79739 8.46368 9.27336 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.002818 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.667056 B = 9933.678087 C =10614.287379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 C 0.160 3.840 4 H 0.061 0.939 5 C 0.160 3.840 6 H 0.071 0.929 7 N -0.695 5.695 8 C 0.499 3.501 9 O -0.570 6.570 10 C 0.113 3.887 11 H 0.151 0.849 12 C -0.109 4.109 13 C -0.156 4.156 14 C 0.510 3.490 15 O -0.573 6.573 16 N -0.592 5.592 17 C 0.152 3.848 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.139 4.139 21 C 0.181 3.819 22 N -0.613 5.613 23 C -0.231 4.231 24 H 0.084 0.916 25 C -0.063 4.063 26 N -0.951 5.951 27 Si 0.973 3.027 28 H -0.279 1.279 29 H -0.300 1.300 30 H -0.273 1.273 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.027 0.973 35 H 0.047 0.953 36 H 0.417 0.583 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.042 0.958 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.061 0.939 49 H 0.079 0.921 50 H 0.039 0.961 51 H -0.013 1.013 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.206 10.642 1.035 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.078 0.922 5 C 0.054 3.946 6 H 0.089 0.911 7 N -0.347 5.347 8 C 0.285 3.715 9 O -0.449 6.449 10 C 0.006 3.994 11 H 0.169 0.831 12 C -0.147 4.147 13 C -0.196 4.196 14 C 0.299 3.701 15 O -0.453 6.453 16 N -0.324 5.324 17 C 0.050 3.950 18 C -0.220 4.220 19 C -0.213 4.213 20 C -0.179 4.179 21 C 0.055 3.945 22 N -0.338 5.338 23 C -0.360 4.360 24 H 0.102 0.898 25 C -0.257 4.257 26 N -0.599 5.599 27 Si 0.801 3.199 28 H -0.205 1.205 29 H -0.227 1.227 30 H -0.199 1.199 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.255 0.745 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.117 0.883 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.058 0.942 51 H 0.005 0.995 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.202 10.302 -0.248 22.678 hybrid contribution 1.499 -0.839 0.255 1.736 sum -18.703 9.463 0.007 20.961 Atomic orbital electron populations 1.21653 0.93467 1.01921 1.01996 1.21921 0.96842 0.97880 1.00128 1.21282 0.84164 0.94373 0.94888 0.92167 1.21550 0.84228 0.91866 0.96962 0.91100 1.45762 1.25227 1.51303 1.12440 1.21554 0.84743 0.81068 0.84140 1.90726 1.74162 1.53806 1.26160 1.21912 0.90259 1.01674 0.85606 0.83133 1.22782 0.95327 1.01010 0.95568 1.22445 1.04402 1.00253 0.92500 1.21519 0.80001 0.78891 0.89648 1.90662 1.45711 1.66901 1.42055 1.48251 1.24684 1.42087 1.17349 1.21014 0.98687 0.89912 0.85421 1.22098 1.01252 1.00677 0.97939 1.22090 0.97994 0.98203 1.03041 1.23203 0.95622 0.98846 1.00228 1.21118 0.94043 0.92275 0.87058 1.44675 1.00770 1.68358 1.19954 1.19280 0.90295 1.34585 0.91812 0.89787 1.25697 0.98691 1.02117 0.99162 1.70133 1.10280 1.54575 1.24920 0.85243 0.77195 0.78652 0.78790 1.20486 1.22681 1.19913 0.92752 0.90534 0.93256 0.95417 0.93416 0.74473 0.86870 0.85061 0.88385 0.85793 0.88325 0.93880 0.90419 0.93436 0.90971 0.90028 0.93561 0.92051 0.90260 0.94246 0.99471 0.94514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.58 71.98 0.69 -2.42 16 2 C -0.13 -4.34 5.41 30.60 0.17 -4.18 16 3 C 0.16 5.60 2.94 45.34 0.13 5.73 16 4 H 0.06 1.86 7.71 -2.39 -0.02 1.84 16 5 C 0.16 5.02 2.02 46.18 0.09 5.11 16 6 H 0.07 2.62 7.18 -2.39 -0.02 2.60 16 7 N -0.69 -14.19 4.62 -436.91 -2.02 -16.21 16 8 C 0.50 10.85 7.17 87.66 0.63 11.48 16 9 O -0.57 -18.40 14.65 -3.03 -0.04 -18.44 16 10 C 0.11 1.50 3.45 44.70 0.15 1.66 16 11 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 12 C -0.11 -0.78 6.65 31.65 0.21 -0.57 16 13 C -0.16 -2.17 6.86 30.60 0.21 -1.96 16 14 C 0.51 11.79 7.41 87.92 0.65 12.44 16 15 O -0.57 -18.04 15.12 -3.07 -0.05 -18.09 16 16 N -0.59 -11.61 2.04 -774.44 -1.58 -13.19 16 17 C 0.15 3.02 3.28 44.99 0.15 3.16 16 18 C -0.16 -4.03 9.19 71.98 0.66 -3.37 16 19 C -0.16 -2.60 9.20 71.98 0.66 -1.93 16 20 C -0.14 -5.02 6.77 31.99 0.22 -4.80 16 21 C 0.18 8.71 5.41 86.86 0.47 9.19 16 22 N -0.61 -29.10 3.13 -668.27 -2.09 -31.19 16 23 C -0.23 -12.09 9.75 84.03 0.82 -11.27 16 24 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 25 C -0.06 -3.49 5.47 84.86 0.46 -3.02 16 26 N -0.95 -56.28 10.57 21.65 0.23 -56.05 16 27 Si 0.97 44.32 29.55 68.60 2.03 46.34 16 28 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 29 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 30 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.05 1.16 7.40 -2.39 -0.02 1.14 16 34 H 0.03 1.08 8.07 -2.38 -0.02 1.06 16 35 H 0.05 1.76 7.90 -2.39 -0.02 1.75 16 36 H 0.42 5.51 8.15 -92.71 -0.76 4.76 16 37 H 0.11 0.55 7.47 -2.39 -0.02 0.53 16 38 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.10 1.68 8.07 -2.39 -0.02 1.66 16 42 H 0.04 1.26 6.77 -2.39 -0.02 1.24 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 44 H 0.05 1.44 6.78 -2.38 -0.02 1.42 16 45 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 1.02 6.80 -2.39 -0.02 1.01 16 48 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 50 H 0.04 2.14 6.93 -2.39 -0.02 2.12 16 51 H -0.01 -0.70 8.06 -2.39 -0.02 -0.72 16 52 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -77.85 404.55 3.00 -74.85 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.15 Total: 16.75 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.38 Total: 15.23 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -5.46 Total: -116.64 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.09 Total: -36.53 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -77.85 3.00 -74.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087699417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.162 kcal (2) G-P(sol) polarization free energy of solvation -77.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds