Wall clock time and date at job start Tue Mar 31 2020 20:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46773 * 2 1 4 4 H 1.09004 * 109.99463 * 304.60456 * 3 2 1 5 5 C 1.54330 * 109.99021 * 183.56774 * 3 2 1 6 6 H 1.09001 * 110.67273 * 337.04466 * 5 3 2 7 7 N 1.46501 * 110.85268 * 100.19759 * 5 3 2 8 8 C 1.34779 * 119.99895 * 200.14942 * 7 5 3 9 9 O 1.21339 * 120.00188 * 359.97438 * 8 7 5 10 10 C 1.49455 * 119.99521 * 179.97438 * 8 7 5 11 11 O 1.21352 * 120.00273 * 354.25240 * 10 8 7 12 12 N 1.34778 * 119.99675 * 174.25061 * 10 8 7 13 13 C 1.46928 * 120.63180 * 2.38913 * 12 10 8 14 14 C 1.52759 * 109.00794 * 233.58427 * 13 12 10 15 15 C 1.53036 * 109.38300 * 305.58726 * 14 13 12 16 16 C 1.53006 * 109.45982 * 181.26430 * 15 14 13 17 17 C 1.53040 * 109.54191 * 61.24049 * 15 14 13 18 18 C 1.46921 * 120.62849 * 182.66808 * 12 10 8 19 19 C 1.55155 * 103.01968 * 218.66369 * 5 3 2 20 20 C 1.54903 * 101.58224 * 35.30526 * 19 5 3 21 21 N 1.47021 * 109.88283 * 65.69741 * 3 2 1 22 22 C 1.36931 * 125.64937 * 298.39519 * 21 3 2 23 23 H 1.08000 * 120.00428 * 326.44258 * 22 21 3 24 24 C 1.38814 * 120.00146 * 146.43970 * 22 21 3 25 25 N 1.31617 * 119.99627 * 336.65922 * 24 22 21 26 26 Si 1.86799 * 120.00088 * 156.65471 * 24 22 21 27 27 H 1.48495 * 109.47206 * 60.00331 * 26 24 22 28 28 H 1.48501 * 109.47248 * 300.00031 * 26 24 22 29 29 H 1.48497 * 109.47189 * 180.02562 * 26 24 22 30 30 H 1.09009 * 109.46604 * 177.20556 * 1 2 3 31 31 H 1.08995 * 109.47565 * 297.20119 * 1 2 3 32 32 H 1.08989 * 109.47142 * 57.20831 * 1 2 3 33 33 H 1.08999 * 109.47403 * 240.00170 * 2 1 3 34 34 H 1.09005 * 109.47242 * 119.99535 * 2 1 3 35 35 H 0.96998 * 120.00111 * 20.13719 * 7 5 3 36 36 H 1.09000 * 109.58218 * 353.42072 * 13 12 10 37 37 H 1.09004 * 109.58548 * 113.84006 * 13 12 10 38 38 H 1.09002 * 109.56513 * 185.55414 * 14 13 12 39 39 H 1.08999 * 109.36044 * 65.49858 * 14 13 12 40 40 H 1.09006 * 109.44864 * 301.22831 * 15 14 13 41 41 H 1.08995 * 109.46637 * 299.92639 * 16 15 14 42 42 H 1.08993 * 109.46854 * 59.93133 * 16 15 14 43 43 H 1.09001 * 109.46842 * 179.97438 * 16 15 14 44 44 H 1.09000 * 109.50016 * 178.68172 * 17 15 14 45 45 H 1.09004 * 109.49232 * 58.58133 * 17 15 14 46 46 H 1.08999 * 109.58791 * 246.15326 * 18 12 10 47 47 H 1.09000 * 109.58913 * 6.44117 * 18 12 10 48 48 H 1.09000 * 111.00415 * 277.23539 * 19 5 3 49 49 H 1.09002 * 111.00769 * 153.38465 * 19 5 3 50 50 H 1.09001 * 110.36771 * 204.15242 * 20 19 5 51 51 H 1.09002 * 110.36635 * 81.83017 * 20 19 5 52 52 H 0.96993 * 120.00551 * 357.83302 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6157 1.9879 -0.8431 5 6 3.5805 1.4576 -0.0903 6 1 3.9960 0.5143 0.2642 7 7 4.0200 1.7329 -1.4604 8 6 5.2667 1.3984 -1.8483 9 8 6.0252 0.8696 -1.0626 10 6 5.7147 1.6788 -3.2463 11 8 4.9261 2.1109 -4.0611 12 7 6.9947 1.4518 -3.6019 13 6 7.9484 0.8799 -2.6416 14 6 9.1756 1.7859 -2.5596 15 6 9.7467 1.9958 -3.9638 16 6 10.9944 2.8774 -3.8801 17 6 8.6986 2.6781 -4.8459 18 6 7.4645 1.7771 -4.9555 19 6 3.9748 2.6215 0.8570 20 6 2.9027 2.4952 1.9678 21 7 1.6701 2.1037 1.2601 22 6 0.3926 2.3154 1.7052 23 1 -0.4002 2.5107 0.9983 24 6 0.1165 2.2788 3.0651 25 7 0.9094 1.6159 3.8800 26 14 -1.3804 3.1706 3.7385 27 1 -2.6082 2.6225 3.1084 28 1 -1.2721 4.6199 3.4332 29 1 -1.4506 2.9790 5.2094 30 1 -0.3633 -1.0266 -0.0501 31 1 -0.3634 0.4697 0.9139 32 1 -0.3633 0.5565 -0.8638 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 3.4137 2.1558 -2.0885 36 1 7.4807 0.8107 -1.6595 37 1 8.2519 -0.1125 -2.9749 38 1 9.9307 1.3212 -1.9255 39 1 8.8868 2.7481 -2.1367 40 1 10.0121 1.0308 -4.3957 41 1 10.7290 3.8426 -3.4488 42 1 11.7410 2.3916 -3.2520 43 1 11.4016 3.0266 -4.8802 44 1 9.1141 2.8484 -5.8391 45 1 8.4143 3.6319 -4.4014 46 1 7.7278 0.8593 -5.4813 47 1 6.6768 2.2973 -5.5005 48 1 3.8988 3.5823 0.3480 49 1 4.9761 2.4738 1.2617 50 1 2.7634 3.4520 2.4712 51 1 3.1886 1.7262 2.6854 52 1 1.6688 1.1269 3.5266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087751341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:09 Heat of formation + Delta-G solvation = -45.516733 kcal Electronic energy + Delta-G solvation = -30697.674398 eV Core-core repulsion = 26697.768526 eV Total energy + Delta-G solvation = -3999.905872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.10150 -39.31814 -38.03121 -37.84352 -34.79370 -33.87274 -32.53972 -32.00884 -31.43280 -28.97208 -28.63160 -27.13502 -25.38814 -24.23467 -23.62135 -22.65182 -21.74710 -20.95245 -20.42281 -20.03873 -19.32261 -17.70228 -17.41197 -17.09192 -16.11379 -16.03311 -15.26858 -15.03477 -14.68928 -14.56462 -14.45945 -14.29250 -14.01310 -13.68951 -13.65288 -13.42809 -13.14307 -13.02657 -12.94035 -12.41416 -12.22584 -12.19526 -12.13481 -11.75402 -11.62263 -11.49166 -11.17429 -11.10525 -10.99295 -10.78115 -10.74972 -10.67822 -10.52660 -10.23604 -10.18561 -10.06947 -9.88860 -9.44137 -9.08779 -9.02422 -8.91423 -8.38995 -6.87043 -6.10947 -3.33432 1.35268 2.23278 3.13929 3.40429 3.46180 3.50007 3.67241 4.23064 4.41358 4.45081 4.49753 4.53338 4.80129 4.97781 5.03907 5.10783 5.19081 5.22223 5.29906 5.31420 5.32757 5.37908 5.47129 5.51125 5.60076 5.60944 5.66877 5.72726 5.78745 5.84275 5.91099 5.98215 6.04368 6.09047 6.12216 6.15062 6.23903 6.35505 6.48858 6.59261 6.67896 6.74501 6.87074 6.90736 6.98884 7.07632 7.27086 7.42477 7.68919 7.91171 8.00144 8.48378 8.96758 9.74216 10.35900 11.16962 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.002455 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.884435 B =11403.949952 C =11859.861904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.154 3.846 4 H 0.039 0.961 5 C 0.130 3.870 6 H 0.098 0.902 7 N -0.677 5.677 8 C 0.510 3.490 9 O -0.513 6.513 10 C 0.508 3.492 11 O -0.525 6.525 12 N -0.580 5.580 13 C 0.043 3.957 14 C -0.127 4.127 15 C -0.096 4.096 16 C -0.146 4.146 17 C -0.128 4.128 18 C 0.106 3.894 19 C -0.144 4.144 20 C 0.141 3.859 21 N -0.588 5.588 22 C -0.328 4.328 23 H 0.059 0.941 24 C -0.020 4.020 25 N -0.909 5.909 26 Si 1.069 2.931 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.285 1.285 30 H 0.029 0.971 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.412 0.588 36 H 0.164 0.836 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.050 0.950 51 H 0.032 0.968 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.854 -0.058 -15.573 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C 0.047 3.953 4 H 0.057 0.943 5 C 0.026 3.974 6 H 0.116 0.884 7 N -0.327 5.327 8 C 0.291 3.709 9 O -0.392 6.392 10 C 0.291 3.709 11 O -0.401 6.401 12 N -0.313 5.313 13 C -0.078 4.078 14 C -0.165 4.165 15 C -0.115 4.115 16 C -0.204 4.204 17 C -0.166 4.166 18 C -0.017 4.017 19 C -0.183 4.183 20 C 0.015 3.985 21 N -0.314 5.314 22 C -0.456 4.456 23 H 0.076 0.924 24 C -0.224 4.224 25 N -0.547 5.547 26 Si 0.899 3.101 27 H -0.218 1.218 28 H -0.220 1.220 29 H -0.211 1.211 30 H 0.048 0.952 31 H 0.118 0.882 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.248 0.752 36 H 0.180 0.820 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.112 0.888 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.049 0.951 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.995 0.184 -14.012 21.265 hybrid contribution 0.790 -0.292 -1.945 2.120 sum 16.785 -0.109 -15.957 23.160 Atomic orbital electron populations 1.21952 0.95509 0.99382 1.04256 1.21858 0.97329 0.97269 0.99574 1.21242 0.88977 0.92694 0.92379 0.94330 1.22323 0.96340 0.99515 0.79181 0.88381 1.45949 1.13080 1.59037 1.14648 1.20052 0.83169 0.79731 0.87937 1.90244 1.50862 1.43530 1.54554 1.20157 0.82884 0.79185 0.88679 1.90751 1.52590 1.44473 1.52270 1.47969 1.08888 1.60817 1.13641 1.23338 0.90388 0.95466 0.98568 1.21895 0.97350 1.00755 0.96546 1.21186 0.94960 0.99291 0.96049 1.21823 0.97120 0.99825 1.01615 1.21977 0.95020 0.99089 1.00537 1.21732 0.97178 0.99585 0.83163 1.23199 0.99571 0.97593 0.97937 1.21592 0.85464 0.98564 0.92852 1.44429 1.01842 1.65213 1.19914 1.19487 0.84652 1.48439 0.93065 0.92376 1.26027 1.04185 0.98556 0.93615 1.70774 1.17551 1.27986 1.38402 0.83451 0.74655 0.75879 0.76162 1.21800 1.21953 1.21097 0.95208 0.88223 0.94493 0.94413 0.92526 0.75163 0.82018 0.91789 0.90543 0.91615 0.91073 0.92667 0.92550 0.92749 0.90585 0.91387 0.91116 0.88798 0.91443 0.91331 0.93183 0.95062 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.32 37.16 0.35 -2.72 16 2 C -0.12 -2.34 5.47 -26.73 -0.15 -2.49 16 3 C 0.15 3.04 3.01 -66.95 -0.20 2.84 16 4 H 0.04 0.77 7.69 -51.93 -0.40 0.37 16 5 C 0.13 2.25 2.76 -66.09 -0.18 2.06 16 6 H 0.10 1.77 7.40 -51.93 -0.38 1.38 16 7 N -0.68 -10.15 5.20 -52.46 -0.27 -10.42 16 8 C 0.51 7.46 7.81 -11.58 -0.09 7.37 16 9 O -0.51 -7.97 12.73 5.51 0.07 -7.90 16 10 C 0.51 7.01 7.76 -11.58 -0.09 6.92 16 11 O -0.52 -8.17 15.91 5.50 0.09 -8.08 16 12 N -0.58 -6.57 2.98 -173.53 -0.52 -7.09 16 13 C 0.04 0.44 6.22 -3.93 -0.02 0.41 16 14 C -0.13 -1.07 5.34 -26.84 -0.14 -1.21 16 15 C -0.10 -0.68 2.68 -90.58 -0.24 -0.92 16 16 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16 17 C -0.13 -0.95 5.36 -26.61 -0.14 -1.09 16 18 C 0.11 0.96 6.43 -3.71 -0.02 0.94 16 19 C -0.14 -2.56 6.77 -24.59 -0.17 -2.72 16 20 C 0.14 3.10 5.83 -2.53 -0.01 3.09 16 21 N -0.59 -13.80 2.82 -162.57 -0.46 -14.26 16 22 C -0.33 -8.55 6.92 -15.06 -0.10 -8.65 16 23 H 0.06 1.54 7.57 -52.49 -0.40 1.14 16 24 C -0.02 -0.53 5.19 -17.43 -0.09 -0.62 16 25 N -0.91 -26.24 13.22 55.49 0.73 -25.51 16 26 Si 1.07 24.45 29.98 -169.99 -5.10 19.36 16 27 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.10 2.33 5.19 -51.93 -0.27 2.06 16 32 H 0.04 0.69 8.14 -51.94 -0.42 0.26 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.41 5.88 7.80 -40.82 -0.32 5.56 16 36 H 0.16 2.00 3.74 -57.11 -0.21 1.78 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.95 7.02 -51.93 -0.36 0.58 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 51 H 0.03 0.74 6.69 -51.93 -0.35 0.40 16 52 H 0.27 7.86 6.16 -40.82 -0.25 7.61 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -29.19 397.90 -9.36 -38.55 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.93 Total: 6.71 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.98 Total: 2.63 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.51 Total: -57.27 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.16 Total: -15.98 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.10 Total: 19.36 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.19 -9.36 -38.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087751341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.969 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds