Wall clock time and date at job start Tue Mar 31 2020 20:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46773 * 2 1 4 4 H 1.09004 * 109.99463 * 304.60456 * 3 2 1 5 5 C 1.54330 * 109.99021 * 183.56774 * 3 2 1 6 6 H 1.09001 * 110.67273 * 337.04466 * 5 3 2 7 7 N 1.46501 * 110.85268 * 100.19759 * 5 3 2 8 8 C 1.34779 * 119.99895 * 200.14942 * 7 5 3 9 9 O 1.21339 * 120.00188 * 359.97438 * 8 7 5 10 10 C 1.49455 * 119.99521 * 179.97438 * 8 7 5 11 11 O 1.21352 * 120.00273 * 354.25240 * 10 8 7 12 12 N 1.34778 * 119.99675 * 174.25061 * 10 8 7 13 13 C 1.46928 * 120.63180 * 2.38913 * 12 10 8 14 14 C 1.52759 * 109.00794 * 233.58427 * 13 12 10 15 15 C 1.53036 * 109.38300 * 305.58726 * 14 13 12 16 16 C 1.53006 * 109.45982 * 181.26430 * 15 14 13 17 17 C 1.53040 * 109.54191 * 61.24049 * 15 14 13 18 18 C 1.46921 * 120.62849 * 182.66808 * 12 10 8 19 19 C 1.55155 * 103.01968 * 218.66369 * 5 3 2 20 20 C 1.54903 * 101.58224 * 35.30526 * 19 5 3 21 21 N 1.47021 * 109.88283 * 65.69741 * 3 2 1 22 22 C 1.36931 * 125.64937 * 298.39519 * 21 3 2 23 23 H 1.08000 * 120.00428 * 326.44258 * 22 21 3 24 24 C 1.38814 * 120.00146 * 146.43970 * 22 21 3 25 25 N 1.31617 * 119.99627 * 336.65922 * 24 22 21 26 26 Si 1.86799 * 120.00088 * 156.65471 * 24 22 21 27 27 H 1.48495 * 109.47206 * 60.00331 * 26 24 22 28 28 H 1.48501 * 109.47248 * 300.00031 * 26 24 22 29 29 H 1.48497 * 109.47189 * 180.02562 * 26 24 22 30 30 H 1.09009 * 109.46604 * 177.20556 * 1 2 3 31 31 H 1.08995 * 109.47565 * 297.20119 * 1 2 3 32 32 H 1.08989 * 109.47142 * 57.20831 * 1 2 3 33 33 H 1.08999 * 109.47403 * 240.00170 * 2 1 3 34 34 H 1.09005 * 109.47242 * 119.99535 * 2 1 3 35 35 H 0.96998 * 120.00111 * 20.13719 * 7 5 3 36 36 H 1.09000 * 109.58218 * 353.42072 * 13 12 10 37 37 H 1.09004 * 109.58548 * 113.84006 * 13 12 10 38 38 H 1.09002 * 109.56513 * 185.55414 * 14 13 12 39 39 H 1.08999 * 109.36044 * 65.49858 * 14 13 12 40 40 H 1.09006 * 109.44864 * 301.22831 * 15 14 13 41 41 H 1.08995 * 109.46637 * 299.92639 * 16 15 14 42 42 H 1.08993 * 109.46854 * 59.93133 * 16 15 14 43 43 H 1.09001 * 109.46842 * 179.97438 * 16 15 14 44 44 H 1.09000 * 109.50016 * 178.68172 * 17 15 14 45 45 H 1.09004 * 109.49232 * 58.58133 * 17 15 14 46 46 H 1.08999 * 109.58791 * 246.15326 * 18 12 10 47 47 H 1.09000 * 109.58913 * 6.44117 * 18 12 10 48 48 H 1.09000 * 111.00415 * 277.23539 * 19 5 3 49 49 H 1.09002 * 111.00769 * 153.38465 * 19 5 3 50 50 H 1.09001 * 110.36771 * 204.15242 * 20 19 5 51 51 H 1.09002 * 110.36635 * 81.83017 * 20 19 5 52 52 H 0.96993 * 120.00551 * 357.83302 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6157 1.9879 -0.8431 5 6 3.5805 1.4576 -0.0903 6 1 3.9960 0.5143 0.2642 7 7 4.0200 1.7329 -1.4604 8 6 5.2667 1.3984 -1.8483 9 8 6.0252 0.8696 -1.0626 10 6 5.7147 1.6788 -3.2463 11 8 4.9261 2.1109 -4.0611 12 7 6.9947 1.4518 -3.6019 13 6 7.9484 0.8799 -2.6416 14 6 9.1756 1.7859 -2.5596 15 6 9.7467 1.9958 -3.9638 16 6 10.9944 2.8774 -3.8801 17 6 8.6986 2.6781 -4.8459 18 6 7.4645 1.7771 -4.9555 19 6 3.9748 2.6215 0.8570 20 6 2.9027 2.4952 1.9678 21 7 1.6701 2.1037 1.2601 22 6 0.3926 2.3154 1.7052 23 1 -0.4002 2.5107 0.9983 24 6 0.1165 2.2788 3.0651 25 7 0.9094 1.6159 3.8800 26 14 -1.3804 3.1706 3.7385 27 1 -2.6082 2.6225 3.1084 28 1 -1.2721 4.6199 3.4332 29 1 -1.4506 2.9790 5.2094 30 1 -0.3633 -1.0266 -0.0501 31 1 -0.3634 0.4697 0.9139 32 1 -0.3633 0.5565 -0.8638 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 3.4137 2.1558 -2.0885 36 1 7.4807 0.8107 -1.6595 37 1 8.2519 -0.1125 -2.9749 38 1 9.9307 1.3212 -1.9255 39 1 8.8868 2.7481 -2.1367 40 1 10.0121 1.0308 -4.3957 41 1 10.7290 3.8426 -3.4488 42 1 11.7410 2.3916 -3.2520 43 1 11.4016 3.0266 -4.8802 44 1 9.1141 2.8484 -5.8391 45 1 8.4143 3.6319 -4.4014 46 1 7.7278 0.8593 -5.4813 47 1 6.6768 2.2973 -5.5005 48 1 3.8988 3.5823 0.3480 49 1 4.9761 2.4738 1.2617 50 1 2.7634 3.4520 2.4712 51 1 3.1886 1.7262 2.6854 52 1 1.6688 1.1269 3.5266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087751341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:08 Heat of formation + Delta-G solvation = -62.754891 kcal Electronic energy + Delta-G solvation = -30698.421901 eV Core-core repulsion = 26697.768526 eV Total energy + Delta-G solvation = -4000.653374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.18389 -40.54390 -39.34388 -38.86705 -36.10327 -34.88899 -34.23559 -33.68515 -32.15191 -30.58802 -29.54086 -28.66163 -26.77383 -25.70029 -24.36380 -23.76598 -23.27771 -22.05251 -21.83956 -21.30978 -20.47603 -19.30717 -18.74243 -18.26139 -17.42258 -17.09937 -16.51004 -16.08825 -15.88572 -15.70896 -15.56627 -15.40322 -15.19593 -15.13912 -15.00553 -14.66134 -14.44521 -14.24880 -14.04649 -13.88939 -13.65562 -13.33861 -12.84885 -12.81022 -12.74307 -12.70027 -12.59802 -12.50955 -12.19566 -12.17597 -11.91066 -11.86179 -11.85097 -11.77067 -11.58468 -11.47177 -11.37017 -11.35165 -10.41865 -10.32592 -10.09645 -9.84866 -8.85945 -8.18488 -5.40275 0.23244 1.16405 1.60515 1.67450 1.85292 2.02032 2.34151 2.66108 3.13123 3.27266 3.48658 3.66581 3.72516 3.79465 3.83558 3.87408 4.05977 4.10783 4.27045 4.31309 4.34592 4.37554 4.44327 4.54753 4.55703 4.64125 4.72127 4.74521 4.75725 4.87088 4.88652 4.90717 4.95997 5.04178 5.04324 5.04927 5.07431 5.14774 5.15706 5.23956 5.29695 5.35372 5.40070 5.49912 5.56065 5.70452 5.89435 5.91542 6.14697 6.42408 6.63152 6.84435 6.97544 7.73011 8.37525 9.06758 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.002455 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.884435 B =11403.949952 C =11859.861904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.152 3.848 4 H 0.045 0.955 5 C 0.148 3.852 6 H 0.093 0.907 7 N -0.674 5.674 8 C 0.512 3.488 9 O -0.522 6.522 10 C 0.507 3.493 11 O -0.547 6.547 12 N -0.572 5.572 13 C 0.042 3.958 14 C -0.124 4.124 15 C -0.093 4.093 16 C -0.144 4.144 17 C -0.123 4.123 18 C 0.101 3.899 19 C -0.127 4.127 20 C 0.144 3.856 21 N -0.605 5.605 22 C -0.318 4.318 23 H 0.054 0.946 24 C -0.072 4.072 25 N -0.942 5.942 26 Si 1.113 2.887 27 H -0.274 1.274 28 H -0.281 1.281 29 H -0.296 1.296 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.417 0.583 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.027 0.973 51 H 0.010 0.990 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.348 -0.099 -17.997 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.045 3.955 4 H 0.063 0.937 5 C 0.043 3.957 6 H 0.111 0.889 7 N -0.325 5.325 8 C 0.294 3.706 9 O -0.401 6.401 10 C 0.290 3.710 11 O -0.426 6.426 12 N -0.305 5.305 13 C -0.079 4.079 14 C -0.162 4.162 15 C -0.111 4.111 16 C -0.201 4.201 17 C -0.161 4.161 18 C -0.020 4.020 19 C -0.166 4.166 20 C 0.018 3.982 21 N -0.331 5.331 22 C -0.447 4.447 23 H 0.072 0.928 24 C -0.269 4.269 25 N -0.584 5.584 26 Si 0.938 3.062 27 H -0.200 1.200 28 H -0.207 1.207 29 H -0.222 1.222 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.255 0.745 36 H 0.161 0.839 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.046 0.954 51 H 0.027 0.973 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.530 0.139 -16.485 24.064 hybrid contribution 0.418 -0.321 -1.288 1.391 sum 17.947 -0.182 -17.772 25.259 Atomic orbital electron populations 1.21830 0.95795 1.00286 1.02661 1.21792 0.97015 0.96931 0.99819 1.21323 0.90842 0.92690 0.90613 0.93688 1.21924 0.94428 0.98941 0.80358 0.88887 1.45770 1.13572 1.59511 1.13639 1.20278 0.82701 0.79201 0.88428 1.90296 1.51048 1.43625 1.55089 1.19939 0.83663 0.79544 0.87891 1.90744 1.53337 1.45991 1.52521 1.48129 1.08148 1.59450 1.14737 1.23307 0.90563 0.96659 0.97336 1.21873 0.96818 0.99677 0.97837 1.21178 0.95059 1.00007 0.94904 1.21795 0.96727 0.99275 1.02337 1.21962 0.94337 0.98005 1.01781 1.21951 0.97514 1.00768 0.81776 1.23052 0.98706 0.98370 0.96514 1.21466 0.86427 0.96559 0.93728 1.44624 1.01579 1.66088 1.20845 1.19614 0.85615 1.46500 0.92946 0.92816 1.27196 1.06115 0.99160 0.94474 1.70884 1.18459 1.30267 1.38743 0.82861 0.72770 0.75552 0.75015 1.19986 1.20733 1.22182 0.93439 0.91989 0.93337 0.91578 0.94659 0.74549 0.83944 0.90306 0.89303 0.92968 0.89963 0.93345 0.92068 0.91708 0.88425 0.92661 0.89205 0.89851 0.90564 0.89867 0.95418 0.97266 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 9.32 71.98 0.67 -5.14 16 2 C -0.12 -4.42 5.47 30.60 0.17 -4.25 16 3 C 0.15 5.91 3.01 45.35 0.14 6.05 16 4 H 0.05 1.73 7.69 -2.38 -0.02 1.71 16 5 C 0.15 4.99 2.76 46.18 0.13 5.12 16 6 H 0.09 3.28 7.40 -2.39 -0.02 3.27 16 7 N -0.67 -19.30 5.20 -438.24 -2.28 -21.58 16 8 C 0.51 14.35 7.81 87.27 0.68 15.03 16 9 O -0.52 -15.60 12.73 -3.21 -0.04 -15.64 16 10 C 0.51 13.34 7.76 87.27 0.68 14.01 16 11 O -0.55 -16.44 15.91 -3.25 -0.05 -16.49 16 12 N -0.57 -11.96 2.98 -821.30 -2.45 -14.41 16 13 C 0.04 0.77 6.22 86.22 0.54 1.30 16 14 C -0.12 -1.82 5.34 30.53 0.16 -1.66 16 15 C -0.09 -1.05 2.68 -10.77 -0.03 -1.08 16 16 C -0.14 -1.39 9.19 71.98 0.66 -0.73 16 17 C -0.12 -1.51 5.36 30.67 0.16 -1.35 16 18 C 0.10 1.61 6.43 86.37 0.56 2.17 16 19 C -0.13 -4.47 6.77 31.98 0.22 -4.25 16 20 C 0.14 6.52 5.83 86.85 0.51 7.02 16 21 N -0.61 -28.87 2.82 -668.25 -1.89 -30.76 16 22 C -0.32 -16.83 6.92 84.03 0.58 -16.24 16 23 H 0.05 2.86 7.57 -2.91 -0.02 2.84 16 24 C -0.07 -3.97 5.19 84.86 0.44 -3.52 16 25 N -0.94 -56.39 13.22 21.65 0.29 -56.10 16 26 Si 1.11 50.09 29.98 68.60 2.06 52.15 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 29 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 30 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.06 2.92 5.19 -2.39 -0.01 2.91 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.42 11.29 7.80 -92.71 -0.72 10.56 16 36 H 0.14 3.33 3.74 -84.51 -0.32 3.01 16 37 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.55 7.02 -2.39 -0.02 1.53 16 48 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 50 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.01 0.47 6.69 -2.39 -0.02 0.46 16 52 H 0.26 15.64 6.16 -92.71 -0.57 15.07 16 Total: -1.00 -64.27 397.90 1.98 -62.30 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.08 Total: 28.05 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.26 Total: 12.48 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -6.32 Total: -122.85 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.09 Total: -32.12 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.06 Total: 52.15 kcal Total: -64.27 1.98 -62.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087751341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.459 kcal (2) G-P(sol) polarization free energy of solvation -64.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds