Wall clock time and date at job start Tue Mar 31 2020 20:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47019 * 2 1 4 4 H 1.09001 * 109.87354 * 61.12627 * 3 2 1 5 5 C 1.54319 * 109.88604 * 300.10625 * 3 2 1 6 6 H 1.08999 * 110.72037 * 336.60099 * 5 3 2 7 7 N 1.46506 * 110.71870 * 99.69514 * 5 3 2 8 8 C 1.34778 * 120.00352 * 202.56066 * 7 5 3 9 9 O 1.21355 * 119.99322 * 0.02562 * 8 7 5 10 10 C 1.49450 * 120.00238 * 179.97438 * 8 7 5 11 11 O 1.21345 * 119.99763 * 7.03953 * 10 8 7 12 12 N 1.34774 * 120.00100 * 187.03529 * 10 8 7 13 13 C 1.46935 * 120.62550 * 7.00768 * 12 10 8 14 14 C 1.53196 * 108.77373 * 126.37252 * 13 12 10 15 15 C 1.53038 * 109.31495 * 54.62969 * 14 13 12 16 16 C 1.53050 * 109.53878 * 298.63696 * 15 14 13 17 17 H 1.08997 * 109.49377 * 301.41317 * 16 15 14 18 18 C 1.52997 * 109.49884 * 181.35095 * 16 15 14 19 19 C 1.46919 * 120.63314 * 186.72634 * 12 10 8 20 20 C 1.55157 * 102.94640 * 218.23354 * 5 3 2 21 21 C 1.54911 * 101.57919 * 35.50440 * 20 5 3 22 22 N 1.47024 * 110.01155 * 182.22065 * 3 2 1 23 23 C 1.36938 * 125.65076 * 298.46931 * 22 3 2 24 24 H 1.07995 * 119.99706 * 343.98209 * 23 22 3 25 25 C 1.38811 * 120.00046 * 163.97709 * 23 22 3 26 26 N 1.31617 * 120.00068 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99997 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47011 * 60.00301 * 27 25 23 29 29 H 1.48499 * 109.46975 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47111 * 300.00262 * 27 25 23 31 31 H 1.09002 * 109.47081 * 173.48747 * 1 2 3 32 32 H 1.08989 * 109.47213 * 293.49163 * 1 2 3 33 33 H 1.09002 * 109.47306 * 53.49362 * 1 2 3 34 34 H 1.09003 * 109.47062 * 240.00236 * 2 1 3 35 35 H 1.08998 * 109.47139 * 120.00282 * 2 1 3 36 36 H 0.97000 * 119.99740 * 22.56005 * 7 5 3 37 37 H 1.08999 * 109.58310 * 246.14968 * 13 12 10 38 38 H 1.08988 * 109.59102 * 6.57820 * 13 12 10 39 39 H 1.09000 * 109.49693 * 174.58533 * 14 13 12 40 40 H 1.09002 * 109.49337 * 294.64466 * 14 13 12 41 41 H 1.08997 * 109.46318 * 58.65712 * 15 14 13 42 42 H 1.08997 * 109.46214 * 178.63187 * 15 14 13 43 43 H 1.08998 * 109.47090 * 59.99762 * 18 16 15 44 44 H 1.08996 * 109.47213 * 180.02562 * 18 16 15 45 45 H 1.08997 * 109.46995 * 300.00243 * 18 16 15 46 46 H 1.08995 * 109.58562 * 353.42112 * 19 12 10 47 47 H 1.09004 * 109.58695 * 113.84518 * 19 12 10 48 48 H 1.09000 * 111.00275 * 153.57756 * 20 5 3 49 49 H 1.09006 * 111.00393 * 277.42778 * 20 5 3 50 50 H 1.08998 * 110.36709 * 204.15323 * 21 20 5 51 51 H 1.08990 * 110.36710 * 81.82750 * 21 20 5 52 52 H 0.97004 * 120.00061 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6968 1.9568 0.8977 5 6 1.5286 2.1800 -1.2554 6 1 1.2873 1.4712 -2.0475 7 7 0.3646 3.0087 -0.9316 8 6 -0.4996 3.3655 -1.9023 9 8 -0.3138 3.0000 -3.0445 10 6 -1.6873 4.2104 -1.5719 11 8 -1.8065 4.6811 -0.4598 12 7 -2.6259 4.4495 -2.5090 13 6 -2.5772 3.7658 -3.8087 14 6 -3.9260 3.0834 -4.0576 15 6 -5.0472 4.1175 -3.9329 16 6 -5.0534 4.6975 -2.5166 17 1 -5.1924 3.8928 -1.7947 18 6 -6.1957 5.7065 -2.3830 19 6 -3.7206 5.3940 -2.2482 20 6 2.7401 3.0618 -1.6581 21 6 3.9306 2.1419 -1.2890 22 7 3.5091 1.4567 -0.0535 23 6 4.3473 0.9214 0.8878 24 1 3.9694 0.6729 1.8685 25 6 5.6827 0.6982 0.5815 26 7 6.1434 1.0015 -0.6135 27 14 6.8259 -0.0326 1.8654 28 1 6.3230 -1.3692 2.2725 29 1 8.1895 -0.1694 1.2935 30 1 6.8741 0.8604 3.0510 31 1 -0.3633 -1.0211 -0.1166 32 1 -0.3633 0.4096 0.9424 33 1 -0.3634 0.6114 -0.8260 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.2160 3.3005 -0.0186 37 1 -2.3849 4.4934 -4.5972 38 1 -1.7852 3.0171 -3.7983 39 1 -3.9370 2.6538 -5.0594 40 1 -4.0754 2.2935 -3.3215 41 1 -4.8834 4.9193 -4.6529 42 1 -6.0060 3.6396 -4.1336 43 1 -7.1455 5.2076 -2.5752 44 1 -6.1994 6.1196 -1.3743 45 1 -6.0556 6.5115 -3.1044 46 1 -3.6827 5.7192 -1.2086 47 1 -3.6233 6.2571 -2.9069 48 1 2.7289 3.2766 -2.7267 49 1 2.7632 3.9832 -1.0762 50 1 4.8264 2.7355 -1.1068 51 1 4.1099 1.4167 -2.0827 52 1 7.0767 0.8459 -0.8274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087752261.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:16 Heat of formation + Delta-G solvation = -44.365122 kcal Electronic energy + Delta-G solvation = -30800.622384 eV Core-core repulsion = 26800.766450 eV Total energy + Delta-G solvation = -3999.855934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.04026 -39.30020 -37.92469 -37.68157 -34.55242 -33.67582 -32.76094 -32.13788 -31.73747 -29.13483 -27.61851 -26.83194 -26.10773 -24.65914 -23.29468 -22.57427 -21.99213 -20.71243 -20.25924 -20.13744 -19.22226 -17.46046 -17.16720 -16.78253 -16.21701 -15.77977 -15.46227 -15.03140 -14.74056 -14.66176 -14.26672 -14.14781 -14.02228 -13.80038 -13.60761 -13.41180 -13.21325 -12.92510 -12.75092 -12.44790 -12.14891 -12.06467 -11.94741 -11.66071 -11.59480 -11.38054 -11.21473 -11.17313 -10.91513 -10.88984 -10.84438 -10.71809 -10.63098 -10.49678 -10.25542 -10.10966 -9.78452 -9.68260 -9.18972 -8.93823 -8.76606 -8.60207 -6.82600 -5.78111 -3.14843 1.42047 2.28848 3.18969 3.38497 3.42846 3.44110 3.48282 4.27737 4.41435 4.45801 4.49321 4.54964 4.76222 5.00793 5.10461 5.17503 5.19004 5.26596 5.32882 5.37186 5.41507 5.42735 5.48475 5.51422 5.64792 5.70037 5.71493 5.74417 5.76225 5.79589 5.81812 5.85156 6.03179 6.05950 6.14143 6.19148 6.28399 6.37532 6.41198 6.50295 6.61348 6.66395 6.90121 6.93636 7.07606 7.35192 7.46252 7.58557 7.74176 7.75881 8.06502 8.24038 9.15541 9.76261 10.44088 11.34240 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.002426 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.571611 B =11536.980767 C =11635.783482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.160 3.840 4 H 0.037 0.963 5 C 0.133 3.867 6 H 0.099 0.901 7 N -0.676 5.676 8 C 0.507 3.493 9 O -0.516 6.516 10 C 0.509 3.491 11 O -0.524 6.524 12 N -0.583 5.583 13 C 0.064 3.936 14 C -0.136 4.136 15 C -0.117 4.117 16 C -0.107 4.107 17 H 0.075 0.925 18 C -0.145 4.145 19 C 0.112 3.888 20 C -0.157 4.157 21 C 0.175 3.825 22 N -0.593 5.593 23 C -0.230 4.230 24 H 0.075 0.925 25 C -0.002 4.002 26 N -0.916 5.916 27 Si 0.911 3.089 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.284 1.284 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.410 0.590 37 H 0.067 0.933 38 H 0.147 0.853 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.031 0.969 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.395 6.884 -6.657 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.052 3.948 4 H 0.055 0.945 5 C 0.030 3.970 6 H 0.117 0.883 7 N -0.327 5.327 8 C 0.288 3.712 9 O -0.395 6.395 10 C 0.291 3.709 11 O -0.400 6.400 12 N -0.316 5.316 13 C -0.057 4.057 14 C -0.174 4.174 15 C -0.154 4.154 16 C -0.126 4.126 17 H 0.093 0.907 18 C -0.202 4.202 19 C -0.011 4.011 20 C -0.196 4.196 21 C 0.050 3.950 22 N -0.317 5.317 23 C -0.358 4.358 24 H 0.092 0.908 25 C -0.199 4.199 26 N -0.562 5.562 27 Si 0.741 3.259 28 H -0.210 1.210 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.247 0.753 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.049 0.951 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.032 6.823 -6.845 24.058 hybrid contribution 0.437 -0.244 0.963 1.085 sum -21.595 6.579 -5.882 23.328 Atomic orbital electron populations 1.21818 0.97296 1.00657 1.00986 1.22005 0.93469 0.99001 1.02570 1.21073 0.86854 0.93272 0.93590 0.94508 1.22298 0.83385 0.92439 0.98916 0.88276 1.45982 1.24628 1.50406 1.11669 1.19985 0.84026 0.81332 0.85843 1.90446 1.73990 1.55397 1.19645 1.20254 0.84003 0.81956 0.84637 1.90745 1.77013 1.51397 1.20802 1.47934 1.25076 1.42700 1.15935 1.22993 1.00519 0.99157 0.83076 1.21954 0.94688 0.98312 1.02448 1.21628 0.98868 0.98738 0.96183 1.21424 0.94436 0.98745 0.98014 0.90693 1.21761 0.97604 0.98802 1.02074 1.21700 0.84966 0.91149 1.03248 1.23453 0.96620 0.99097 1.00455 1.21417 0.93217 0.92314 0.88022 1.44412 0.98047 1.66102 1.23181 1.18884 0.89979 1.35144 0.91786 0.90767 1.24931 0.97695 1.00657 0.96621 1.69910 1.14603 1.52264 1.19419 0.86230 0.79989 0.79229 0.80478 1.21048 1.21602 1.21093 0.93561 0.93400 0.93315 0.92117 0.91712 0.75307 0.91466 0.83618 0.90452 0.91635 0.91719 0.91708 0.92230 0.92311 0.92435 0.88806 0.91122 0.91626 0.91810 0.90942 0.95124 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.72 37.16 0.36 -1.84 16 2 C -0.13 -2.38 5.39 -26.73 -0.14 -2.52 16 3 C 0.16 3.13 2.99 -66.96 -0.20 2.93 16 4 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 5 C 0.13 2.32 1.82 -66.10 -0.12 2.20 16 6 H 0.10 1.79 7.09 -51.93 -0.37 1.42 16 7 N -0.68 -10.15 4.48 -52.46 -0.24 -10.39 16 8 C 0.51 7.47 7.75 -11.58 -0.09 7.38 16 9 O -0.52 -8.14 12.83 5.49 0.07 -8.07 16 10 C 0.51 7.04 7.74 -11.59 -0.09 6.95 16 11 O -0.52 -8.16 15.92 5.50 0.09 -8.08 16 12 N -0.58 -6.63 2.98 -173.54 -0.52 -7.15 16 13 C 0.06 0.64 6.03 -3.70 -0.02 0.62 16 14 C -0.14 -1.09 6.08 -26.61 -0.16 -1.25 16 15 C -0.12 -0.80 5.17 -26.69 -0.14 -0.94 16 16 C -0.11 -0.80 2.86 -90.72 -0.26 -1.06 16 17 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 18 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 19 C 0.11 1.03 5.70 -3.94 -0.02 1.01 16 20 C -0.16 -2.96 6.77 -24.58 -0.17 -3.13 16 21 C 0.18 4.13 5.39 -2.53 -0.01 4.11 16 22 N -0.59 -14.38 3.13 -162.58 -0.51 -14.89 16 23 C -0.23 -6.14 9.85 -15.06 -0.15 -6.29 16 24 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 25 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 26 N -0.92 -26.21 10.63 55.49 0.59 -25.62 16 27 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 33 H 0.05 0.71 6.35 -51.93 -0.33 0.38 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.25 8.05 -51.93 -0.42 0.84 16 36 H 0.41 5.87 7.83 -40.82 -0.32 5.55 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.15 1.78 4.22 -55.28 -0.23 1.54 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.97 7.00 -51.93 -0.36 0.61 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.07 1.90 7.03 -51.93 -0.37 1.53 16 51 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 52 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 400.34 15.07 6.03 6.03 Total: -1.00 -29.51 400.34 -9.57 -39.08 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -9.10 Total: 4.93 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -0.97 Total: 7.53 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.67 Total: -58.05 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.16 Total: -16.15 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.51 -9.57 -39.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087752261.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.286 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds