Wall clock time and date at job start Tue Mar 31 2020 20:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47019 * 2 1 4 4 H 1.09001 * 109.87354 * 61.12627 * 3 2 1 5 5 C 1.54319 * 109.88604 * 300.10625 * 3 2 1 6 6 H 1.08999 * 110.72037 * 336.60099 * 5 3 2 7 7 N 1.46506 * 110.71870 * 99.69514 * 5 3 2 8 8 C 1.34778 * 120.00352 * 202.56066 * 7 5 3 9 9 O 1.21355 * 119.99322 * 0.02562 * 8 7 5 10 10 C 1.49450 * 120.00238 * 179.97438 * 8 7 5 11 11 O 1.21345 * 119.99763 * 7.03953 * 10 8 7 12 12 N 1.34774 * 120.00100 * 187.03529 * 10 8 7 13 13 C 1.46935 * 120.62550 * 7.00768 * 12 10 8 14 14 C 1.53196 * 108.77373 * 126.37252 * 13 12 10 15 15 C 1.53038 * 109.31495 * 54.62969 * 14 13 12 16 16 C 1.53050 * 109.53878 * 298.63696 * 15 14 13 17 17 H 1.08997 * 109.49377 * 301.41317 * 16 15 14 18 18 C 1.52997 * 109.49884 * 181.35095 * 16 15 14 19 19 C 1.46919 * 120.63314 * 186.72634 * 12 10 8 20 20 C 1.55157 * 102.94640 * 218.23354 * 5 3 2 21 21 C 1.54911 * 101.57919 * 35.50440 * 20 5 3 22 22 N 1.47024 * 110.01155 * 182.22065 * 3 2 1 23 23 C 1.36938 * 125.65076 * 298.46931 * 22 3 2 24 24 H 1.07995 * 119.99706 * 343.98209 * 23 22 3 25 25 C 1.38811 * 120.00046 * 163.97709 * 23 22 3 26 26 N 1.31617 * 120.00068 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99997 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47011 * 60.00301 * 27 25 23 29 29 H 1.48499 * 109.46975 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47111 * 300.00262 * 27 25 23 31 31 H 1.09002 * 109.47081 * 173.48747 * 1 2 3 32 32 H 1.08989 * 109.47213 * 293.49163 * 1 2 3 33 33 H 1.09002 * 109.47306 * 53.49362 * 1 2 3 34 34 H 1.09003 * 109.47062 * 240.00236 * 2 1 3 35 35 H 1.08998 * 109.47139 * 120.00282 * 2 1 3 36 36 H 0.97000 * 119.99740 * 22.56005 * 7 5 3 37 37 H 1.08999 * 109.58310 * 246.14968 * 13 12 10 38 38 H 1.08988 * 109.59102 * 6.57820 * 13 12 10 39 39 H 1.09000 * 109.49693 * 174.58533 * 14 13 12 40 40 H 1.09002 * 109.49337 * 294.64466 * 14 13 12 41 41 H 1.08997 * 109.46318 * 58.65712 * 15 14 13 42 42 H 1.08997 * 109.46214 * 178.63187 * 15 14 13 43 43 H 1.08998 * 109.47090 * 59.99762 * 18 16 15 44 44 H 1.08996 * 109.47213 * 180.02562 * 18 16 15 45 45 H 1.08997 * 109.46995 * 300.00243 * 18 16 15 46 46 H 1.08995 * 109.58562 * 353.42112 * 19 12 10 47 47 H 1.09004 * 109.58695 * 113.84518 * 19 12 10 48 48 H 1.09000 * 111.00275 * 153.57756 * 20 5 3 49 49 H 1.09006 * 111.00393 * 277.42778 * 20 5 3 50 50 H 1.08998 * 110.36709 * 204.15323 * 21 20 5 51 51 H 1.08990 * 110.36710 * 81.82750 * 21 20 5 52 52 H 0.97004 * 120.00061 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6968 1.9568 0.8977 5 6 1.5286 2.1800 -1.2554 6 1 1.2873 1.4712 -2.0475 7 7 0.3646 3.0087 -0.9316 8 6 -0.4996 3.3655 -1.9023 9 8 -0.3138 3.0000 -3.0445 10 6 -1.6873 4.2104 -1.5719 11 8 -1.8065 4.6811 -0.4598 12 7 -2.6259 4.4495 -2.5090 13 6 -2.5772 3.7658 -3.8087 14 6 -3.9260 3.0834 -4.0576 15 6 -5.0472 4.1175 -3.9329 16 6 -5.0534 4.6975 -2.5166 17 1 -5.1924 3.8928 -1.7947 18 6 -6.1957 5.7065 -2.3830 19 6 -3.7206 5.3940 -2.2482 20 6 2.7401 3.0618 -1.6581 21 6 3.9306 2.1419 -1.2890 22 7 3.5091 1.4567 -0.0535 23 6 4.3473 0.9214 0.8878 24 1 3.9694 0.6729 1.8685 25 6 5.6827 0.6982 0.5815 26 7 6.1434 1.0015 -0.6135 27 14 6.8259 -0.0326 1.8654 28 1 6.3230 -1.3692 2.2725 29 1 8.1895 -0.1694 1.2935 30 1 6.8741 0.8604 3.0510 31 1 -0.3633 -1.0211 -0.1166 32 1 -0.3633 0.4096 0.9424 33 1 -0.3634 0.6114 -0.8260 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.2160 3.3005 -0.0186 37 1 -2.3849 4.4934 -4.5972 38 1 -1.7852 3.0171 -3.7983 39 1 -3.9370 2.6538 -5.0594 40 1 -4.0754 2.2935 -3.3215 41 1 -4.8834 4.9193 -4.6529 42 1 -6.0060 3.6396 -4.1336 43 1 -7.1455 5.2076 -2.5752 44 1 -6.1994 6.1196 -1.3743 45 1 -6.0556 6.5115 -3.1044 46 1 -3.6827 5.7192 -1.2086 47 1 -3.6233 6.2571 -2.9069 48 1 2.7289 3.2766 -2.7267 49 1 2.7632 3.9832 -1.0762 50 1 4.8264 2.7355 -1.1068 51 1 4.1099 1.4167 -2.0827 52 1 7.0767 0.8459 -0.8274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087752261.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:15 Heat of formation + Delta-G solvation = -61.682166 kcal Electronic energy + Delta-G solvation = -30801.373307 eV Core-core repulsion = 26800.766450 eV Total energy + Delta-G solvation = -4000.606857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.12992 -40.51250 -39.19985 -38.77450 -35.90190 -34.75753 -34.20971 -33.50783 -32.82978 -30.93063 -28.66348 -27.95924 -27.09915 -26.36047 -24.57364 -23.37092 -23.22227 -22.17286 -21.67945 -21.17805 -20.42035 -18.80793 -18.55468 -18.16000 -17.42480 -16.96101 -16.64581 -16.32477 -16.00873 -15.82019 -15.52608 -15.37659 -15.13522 -15.03034 -14.79425 -14.43881 -14.37208 -14.05998 -13.84658 -13.58993 -13.54704 -13.21984 -13.06115 -12.87600 -12.77604 -12.70809 -12.63725 -12.44706 -12.26545 -12.07948 -12.02823 -12.01335 -11.93394 -11.77667 -11.63298 -11.59361 -11.35523 -11.30745 -10.67190 -10.35318 -10.06151 -9.80010 -8.81951 -7.86117 -5.24094 0.28869 1.21445 1.47861 1.50047 1.56199 2.05820 2.37585 2.52763 3.20238 3.34676 3.59249 3.75967 3.78014 3.85307 3.86115 3.93762 4.09539 4.15963 4.32847 4.33965 4.38871 4.41266 4.54161 4.61095 4.62362 4.66098 4.70790 4.76053 4.78422 4.86792 4.89735 4.97079 5.00245 5.07858 5.12071 5.16847 5.17775 5.21739 5.29964 5.33471 5.38217 5.45009 5.47703 5.50266 5.57025 5.63305 5.71769 5.95307 6.20121 6.23437 6.66097 6.89488 7.09442 7.76168 8.43373 9.25293 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.002426 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.571611 B =11536.980767 C =11635.783482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.046 0.954 5 C 0.154 3.846 6 H 0.096 0.904 7 N -0.672 5.672 8 C 0.510 3.490 9 O -0.525 6.525 10 C 0.508 3.492 11 O -0.546 6.546 12 N -0.576 5.576 13 C 0.061 3.939 14 C -0.132 4.132 15 C -0.113 4.113 16 C -0.102 4.102 17 H 0.062 0.938 18 C -0.141 4.141 19 C 0.107 3.893 20 C -0.142 4.142 21 C 0.183 3.817 22 N -0.612 5.612 23 C -0.235 4.235 24 H 0.079 0.921 25 C -0.059 4.059 26 N -0.947 5.947 27 Si 0.974 3.026 28 H -0.277 1.277 29 H -0.296 1.296 30 H -0.277 1.277 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.416 0.584 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.038 0.962 51 H 0.002 0.998 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.232 7.376 -6.877 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.049 3.951 4 H 0.063 0.937 5 C 0.049 3.951 6 H 0.114 0.886 7 N -0.324 5.324 8 C 0.292 3.708 9 O -0.404 6.404 10 C 0.290 3.710 11 O -0.425 6.425 12 N -0.308 5.308 13 C -0.060 4.060 14 C -0.170 4.170 15 C -0.150 4.150 16 C -0.122 4.122 17 H 0.080 0.920 18 C -0.198 4.198 19 C -0.014 4.014 20 C -0.182 4.182 21 C 0.057 3.943 22 N -0.337 5.337 23 C -0.364 4.364 24 H 0.097 0.903 25 C -0.253 4.253 26 N -0.595 5.595 27 Si 0.802 3.198 28 H -0.203 1.203 29 H -0.223 1.223 30 H -0.203 1.203 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.253 0.747 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.057 0.943 51 H 0.020 0.980 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -24.939 7.322 -7.075 26.938 hybrid contribution 1.241 -0.366 0.980 1.623 sum -23.698 6.955 -6.095 25.439 Atomic orbital electron populations 1.21701 0.94143 1.01920 1.01754 1.21870 0.96094 0.97353 1.00982 1.21237 0.84341 0.94611 0.94886 0.93685 1.21869 0.83641 0.91967 0.97579 0.88605 1.45784 1.23990 1.50395 1.12201 1.20200 0.84132 0.81019 0.85443 1.90479 1.74298 1.55607 1.20022 1.20018 0.84142 0.81945 0.84855 1.90739 1.77536 1.52518 1.21659 1.48091 1.24640 1.42285 1.15766 1.23008 1.01333 0.98998 0.82615 1.21931 0.93766 0.98241 1.03034 1.21623 0.98958 0.98684 0.95763 1.21391 0.93873 0.98675 0.98232 0.91985 1.21733 0.97177 0.98615 1.02307 1.21910 0.85122 0.91395 1.02983 1.23266 0.95224 0.98417 1.01245 1.21131 0.93938 0.91930 0.87254 1.44637 1.00106 1.66178 1.22768 1.19223 0.90561 1.34076 0.92538 0.90315 1.25704 0.99304 1.01777 0.98532 1.70111 1.14336 1.53799 1.21205 0.85229 0.77610 0.78670 0.78271 1.20306 1.22257 1.20347 0.91956 0.92149 0.93089 0.93916 0.93111 0.74652 0.90328 0.85519 0.88912 0.92568 0.90705 0.90355 0.91307 0.92515 0.91504 0.90043 0.89487 0.90436 0.91238 0.94336 0.97968 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.72 71.98 0.70 -3.08 16 2 C -0.12 -4.44 5.39 30.59 0.17 -4.28 16 3 C 0.16 6.07 2.99 45.34 0.14 6.21 16 4 H 0.05 1.71 7.70 -2.39 -0.02 1.69 16 5 C 0.15 5.28 1.82 46.18 0.08 5.37 16 6 H 0.10 3.41 7.09 -2.39 -0.02 3.39 16 7 N -0.67 -19.42 4.48 -438.23 -1.97 -21.39 16 8 C 0.51 14.43 7.75 87.27 0.68 15.11 16 9 O -0.53 -15.97 12.83 -3.26 -0.04 -16.01 16 10 C 0.51 13.46 7.74 87.27 0.68 14.14 16 11 O -0.55 -16.52 15.92 -3.23 -0.05 -16.57 16 12 N -0.58 -12.16 2.98 -821.33 -2.45 -14.60 16 13 C 0.06 1.12 6.03 86.36 0.52 1.64 16 14 C -0.13 -1.79 6.08 30.67 0.19 -1.60 16 15 C -0.11 -1.19 5.17 30.62 0.16 -1.04 16 16 C -0.10 -1.30 2.86 -10.86 -0.03 -1.33 16 17 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 18 C -0.14 -1.26 9.20 71.98 0.66 -0.59 16 19 C 0.11 1.78 5.70 86.22 0.49 2.27 16 20 C -0.14 -5.38 6.77 31.99 0.22 -5.17 16 21 C 0.18 8.94 5.39 86.85 0.47 9.41 16 22 N -0.61 -30.34 3.13 -668.28 -2.09 -32.43 16 23 C -0.23 -12.78 9.85 84.03 0.83 -11.95 16 24 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 25 C -0.06 -3.33 5.47 84.86 0.46 -2.86 16 26 N -0.95 -56.22 10.63 21.65 0.23 -55.99 16 27 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 29 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 30 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.39 6.35 -2.39 -0.02 1.37 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.95 8.05 -2.39 -0.02 1.93 16 36 H 0.42 11.35 7.83 -92.71 -0.73 10.63 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.13 2.91 4.22 -55.38 -0.23 2.68 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.08 1.59 7.00 -2.39 -0.02 1.57 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 49 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 50 H 0.04 2.11 7.03 -2.39 -0.02 2.10 16 51 H 0.00 0.12 8.03 -2.39 -0.02 0.10 16 52 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -65.05 400.34 2.01 -63.04 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.05 Total: 24.44 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.40 Total: 22.24 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -6.27 Total: -124.41 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.09 Total: -32.59 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -65.05 2.01 -63.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087752261.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.354 kcal (2) G-P(sol) polarization free energy of solvation -65.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds