Wall clock time and date at job start Tue Mar 31 2020 20:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47059 * 2 1 4 4 O 1.21277 * 120.00268 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.47423 * 125.64800 * 0.02562 * 5 3 2 7 7 C 1.54907 * 104.83317 * 155.82765 * 6 5 3 8 8 C 1.55164 * 101.58149 * 37.00759 * 7 6 5 9 9 H 1.08998 * 110.71726 * 83.03771 * 8 7 6 10 10 C 1.50702 * 110.71774 * 206.13497 * 8 7 6 11 11 O 1.21281 * 119.99631 * 118.54778 * 10 8 7 12 12 N 1.34779 * 119.99978 * 298.54244 * 10 8 7 13 13 C 1.46497 * 119.99791 * 180.02562 * 12 10 8 14 14 H 1.09007 * 110.78114 * 328.23679 * 13 12 10 15 15 C 1.55156 * 110.72231 * 91.47877 * 13 12 10 16 16 C 1.54693 * 101.67597 * 153.69852 * 15 13 12 17 17 N 1.47422 * 104.94142 * 323.27737 * 16 15 13 18 18 C 1.36937 * 125.64724 * 204.07097 * 17 16 15 19 19 H 1.07996 * 120.00038 * 167.73932 * 18 17 16 20 20 C 1.38806 * 119.99948 * 348.02185 * 18 17 16 21 21 N 1.31618 * 120.00062 * 359.71672 * 20 18 17 22 22 Si 1.86805 * 119.99979 * 179.72204 * 20 18 17 23 23 H 1.48502 * 109.46996 * 59.99830 * 22 20 18 24 24 H 1.48501 * 109.47002 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46921 * 299.99646 * 22 20 18 26 26 C 1.47021 * 108.70294 * 23.81118 * 17 16 15 27 27 H 1.09002 * 109.88276 * 239.74647 * 26 17 16 28 28 C 1.53006 * 109.88451 * 118.58551 * 26 17 16 29 29 C 1.52994 * 109.47239 * 175.16373 * 28 26 17 30 30 C 1.47021 * 125.64764 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.47047 * 300.00262 * 1 2 3 32 32 H 1.09003 * 109.46882 * 60.00171 * 1 2 3 33 33 H 1.09002 * 109.46942 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47475 * 240.00037 * 2 1 3 35 35 H 1.09002 * 109.47375 * 119.99649 * 2 1 3 36 36 H 1.08994 * 110.36852 * 36.98478 * 6 5 3 37 37 H 1.09004 * 110.45873 * 274.71274 * 6 5 3 38 38 H 1.08994 * 111.00563 * 278.93305 * 7 6 5 39 39 H 1.09001 * 111.03544 * 155.09096 * 7 6 5 40 40 H 0.96998 * 119.99744 * 0.02562 * 12 10 8 41 41 H 1.09004 * 111.00137 * 271.94171 * 15 13 12 42 42 H 1.08996 * 110.99994 * 35.79007 * 15 13 12 43 43 H 1.08998 * 110.38502 * 204.36155 * 16 15 13 44 44 H 1.09002 * 110.23706 * 82.11456 * 16 15 13 45 45 H 0.97001 * 120.00175 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.46744 * 295.16658 * 28 26 17 47 47 H 1.09005 * 109.46729 * 55.16073 * 28 26 17 48 48 H 1.09001 * 109.47474 * 65.45736 * 29 28 26 49 49 H 1.08999 * 109.47036 * 185.45891 * 29 28 26 50 50 H 1.08997 * 109.47491 * 305.45794 * 29 28 26 51 51 H 1.09004 * 109.88371 * 61.68664 * 30 5 3 52 52 H 1.09000 * 109.88374 * 300.52324 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4210 0.6463 -0.0017 7 6 5.6528 1.3577 -0.6150 8 6 5.5100 2.7877 -0.0300 9 1 5.9278 2.8364 0.9756 10 6 6.1709 3.8002 -0.9295 11 8 5.5117 4.6836 -1.4354 12 7 7.4946 3.7241 -1.1716 13 6 8.1372 4.7087 -2.0455 14 1 7.4479 5.0472 -2.8192 15 6 8.6696 5.9102 -1.2207 16 6 9.8256 6.4164 -2.1155 17 7 10.4266 5.1972 -2.6859 18 6 11.7114 5.0804 -3.1450 19 1 12.1214 4.1048 -3.3604 20 6 12.4889 6.2157 -3.3281 21 7 11.9893 7.4047 -3.0657 22 14 14.2441 6.0558 -3.9470 23 1 14.2411 5.4041 -5.2814 24 1 14.8550 7.4049 -4.0570 25 1 15.0315 5.2316 -2.9952 26 6 9.4201 4.1256 -2.6745 27 1 9.7779 3.2872 -2.0769 28 6 9.1349 3.6642 -4.1052 29 6 8.1788 2.4702 -4.0750 30 6 3.9815 2.9983 -0.0011 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 4.1293 -0.2049 -0.6167 37 1 4.6383 0.3213 1.0159 38 1 5.5934 1.3731 -1.7032 39 1 6.5800 0.8906 -0.2830 40 1 8.0218 3.0174 -0.7671 41 1 7.9011 6.6742 -1.1027 42 1 9.0450 5.5827 -0.2513 43 1 10.5593 6.9573 -1.5179 44 1 9.4365 7.0546 -2.9089 45 1 12.5327 8.1981 -3.1932 46 1 8.6795 4.4803 -4.6661 47 1 10.0685 3.3701 -4.5849 48 1 7.2123 2.7884 -3.6841 49 1 8.0518 2.0807 -5.0851 50 1 8.5910 1.6907 -3.4342 51 1 3.6990 3.5406 0.9012 52 1 3.6672 3.5547 -0.8841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087787264.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:35 Heat of formation + Delta-G solvation = -57.071693 kcal Electronic energy + Delta-G solvation = -30278.444886 eV Core-core repulsion = 26278.037953 eV Total energy + Delta-G solvation = -4000.406932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.71037 -39.62286 -38.07619 -37.08900 -34.11309 -33.24895 -32.83865 -32.15483 -31.45966 -29.51764 -28.97949 -26.78660 -25.60662 -24.41317 -23.13582 -22.80476 -21.83523 -20.35954 -20.19149 -19.45288 -19.39416 -17.68128 -17.41810 -16.87807 -16.11067 -15.92933 -15.69537 -15.14765 -14.81467 -14.67464 -14.14413 -13.99220 -13.90239 -13.85726 -13.33702 -13.21823 -13.16538 -12.75068 -12.62372 -12.51264 -12.27727 -12.05078 -11.99052 -11.98414 -11.70319 -11.62241 -11.53628 -11.24395 -11.18576 -10.91746 -10.85746 -10.66995 -10.49043 -10.31606 -10.14157 -10.09441 -9.79761 -9.67615 -9.62706 -8.94298 -8.69301 -8.60116 -6.86265 -5.76881 -3.13739 2.38591 2.59442 2.66704 3.28343 3.37039 3.41841 3.42902 3.95941 4.08600 4.38158 4.44475 4.52406 4.70048 4.72751 4.86706 4.87938 4.97382 5.05598 5.19608 5.25532 5.31829 5.37690 5.43548 5.48009 5.50853 5.52626 5.60603 5.64796 5.69973 5.76216 5.80730 5.84969 5.87084 5.97542 6.00575 6.18676 6.26151 6.36548 6.42193 6.52342 6.64240 6.69230 6.90240 7.09787 7.19540 7.49680 7.55823 7.65601 7.76645 7.90646 8.23256 8.32641 9.15095 9.76293 10.42942 11.33983 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.002216 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.954778 B =12632.234472 C =13060.953788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.537 6.537 5 N -0.622 5.622 6 C 0.100 3.900 7 C -0.124 4.124 8 C -0.123 4.123 9 H 0.112 0.888 10 C 0.522 3.478 11 O -0.537 6.537 12 N -0.709 5.709 13 C 0.137 3.863 14 H 0.094 0.906 15 C -0.157 4.157 16 C 0.172 3.828 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.075 0.925 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.162 3.838 27 H 0.035 0.965 28 C -0.132 4.132 29 C -0.145 4.145 30 C 0.121 3.879 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.398 0.602 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.025 0.975 45 H 0.254 0.746 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.047 0.953 49 H 0.044 0.956 50 H 0.046 0.954 51 H 0.072 0.928 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 -17.997 8.022 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.414 6.414 5 N -0.357 5.357 6 C -0.023 4.023 7 C -0.163 4.163 8 C -0.145 4.145 9 H 0.130 0.870 10 C 0.306 3.694 11 O -0.413 6.413 12 N -0.359 5.359 13 C 0.032 3.968 14 H 0.112 0.888 15 C -0.196 4.196 16 C 0.047 3.953 17 N -0.319 5.319 18 C -0.356 4.356 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.564 5.564 22 Si 0.742 3.258 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.054 3.946 27 H 0.052 0.948 28 C -0.172 4.172 29 C -0.203 4.203 30 C -0.002 4.002 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.232 0.768 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.091 0.909 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.805 -16.690 7.601 24.211 hybrid contribution 1.428 -0.377 -0.161 1.486 sum -14.377 -17.068 7.440 23.524 Atomic orbital electron populations 1.21545 0.92919 1.01610 1.03486 1.21617 0.98612 0.93443 1.04202 1.20496 0.80190 0.92002 0.75943 1.90729 1.54283 1.46773 1.49592 1.48564 1.05279 1.07992 1.73908 1.22364 0.86940 0.91748 1.01255 1.22829 0.98503 0.93096 1.01834 1.22340 0.96178 0.95259 1.00767 0.86973 1.20064 0.82369 0.85407 0.81536 1.90729 1.63490 1.35895 1.51217 1.46013 1.08053 1.32145 1.49705 1.22138 0.93989 0.88378 0.92251 0.88772 1.23394 0.99744 0.97179 0.99310 1.21444 0.91334 0.88780 0.93779 1.44442 1.08080 1.07159 1.72208 1.18888 0.86519 0.92732 1.37472 0.90704 1.24876 0.98829 0.95250 1.01211 1.69912 1.35940 0.97003 1.53528 0.86220 0.84170 0.76646 0.78812 1.21115 1.21597 1.21153 1.21064 0.87973 0.91975 0.93633 0.94794 1.22020 0.99074 0.96885 0.99234 1.21757 0.99527 0.98538 1.00498 1.21769 0.89703 0.84591 1.04134 0.91950 0.91901 0.92003 0.88951 0.88993 0.90083 0.90740 0.89648 0.88651 0.76819 0.91915 0.92065 0.90264 0.95683 0.93554 0.92437 0.91673 0.93414 0.93724 0.93441 0.90916 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.91 5.43 -27.88 -0.15 -1.06 16 3 C 0.52 5.69 7.85 -10.98 -0.09 5.61 16 4 O -0.54 -8.23 16.31 5.56 0.09 -8.14 16 5 N -0.62 -5.89 3.33 -170.52 -0.57 -6.46 16 6 C 0.10 0.55 6.69 -2.53 -0.02 0.54 16 7 C -0.12 -0.77 6.47 -24.58 -0.16 -0.93 16 8 C -0.12 -1.10 3.34 -89.93 -0.30 -1.40 16 9 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 10 C 0.52 6.81 7.15 -10.98 -0.08 6.73 16 11 O -0.54 -9.45 15.11 5.56 0.08 -9.37 16 12 N -0.71 -9.05 4.90 -52.03 -0.25 -9.31 16 13 C 0.14 2.33 2.09 -66.10 -0.14 2.19 16 14 H 0.09 1.79 7.18 -51.92 -0.37 1.41 16 15 C -0.16 -2.95 6.76 -24.70 -0.17 -3.12 16 16 C 0.17 4.06 5.45 -2.65 -0.01 4.04 16 17 N -0.59 -14.23 3.13 -162.71 -0.51 -14.74 16 18 C -0.23 -6.01 9.73 -15.06 -0.15 -6.16 16 19 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 20 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 21 N -0.92 -26.25 10.48 55.49 0.58 -25.67 16 22 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 C 0.16 3.04 2.92 -66.95 -0.20 2.84 16 27 H 0.03 0.62 7.72 -51.93 -0.40 0.21 16 28 C -0.13 -2.35 5.43 -26.73 -0.15 -2.50 16 29 C -0.15 -1.99 9.64 37.15 0.36 -1.63 16 30 C 0.12 1.35 6.26 -3.07 -0.02 1.33 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.45 7.84 -51.93 -0.41 0.04 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.31 7.47 -51.93 -0.39 -0.08 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.40 4.02 8.36 -40.82 -0.34 3.68 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.08 2.09 6.74 -51.93 -0.35 1.74 16 44 H 0.03 0.65 8.11 -51.93 -0.42 0.23 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 47 H 0.06 1.25 7.85 -51.93 -0.41 0.84 16 48 H 0.05 0.65 7.47 -51.93 -0.39 0.26 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 52 H 0.09 1.30 6.88 -51.93 -0.36 0.95 16 LS Contribution 409.46 15.07 6.17 6.17 Total: -1.00 -33.84 409.46 -9.72 -43.57 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -9.28 Total: 1.85 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.01 Total: 5.64 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.75 Total: -56.17 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.17 Total: -17.50 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.84 -9.72 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087787264.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.506 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds