Wall clock time and date at job start Tue Mar 31 2020 20:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47059 * 2 1 4 4 O 1.21277 * 120.00268 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.47423 * 125.64800 * 0.02562 * 5 3 2 7 7 C 1.54907 * 104.83317 * 155.82765 * 6 5 3 8 8 C 1.55164 * 101.58149 * 37.00759 * 7 6 5 9 9 H 1.08998 * 110.71726 * 83.03771 * 8 7 6 10 10 C 1.50702 * 110.71774 * 206.13497 * 8 7 6 11 11 O 1.21281 * 119.99631 * 118.54778 * 10 8 7 12 12 N 1.34779 * 119.99978 * 298.54244 * 10 8 7 13 13 C 1.46497 * 119.99791 * 180.02562 * 12 10 8 14 14 H 1.09007 * 110.78114 * 328.23679 * 13 12 10 15 15 C 1.55156 * 110.72231 * 91.47877 * 13 12 10 16 16 C 1.54693 * 101.67597 * 153.69852 * 15 13 12 17 17 N 1.47422 * 104.94142 * 323.27737 * 16 15 13 18 18 C 1.36937 * 125.64724 * 204.07097 * 17 16 15 19 19 H 1.07996 * 120.00038 * 167.73932 * 18 17 16 20 20 C 1.38806 * 119.99948 * 348.02185 * 18 17 16 21 21 N 1.31618 * 120.00062 * 359.71672 * 20 18 17 22 22 Si 1.86805 * 119.99979 * 179.72204 * 20 18 17 23 23 H 1.48502 * 109.46996 * 59.99830 * 22 20 18 24 24 H 1.48501 * 109.47002 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46921 * 299.99646 * 22 20 18 26 26 C 1.47021 * 108.70294 * 23.81118 * 17 16 15 27 27 H 1.09002 * 109.88276 * 239.74647 * 26 17 16 28 28 C 1.53006 * 109.88451 * 118.58551 * 26 17 16 29 29 C 1.52994 * 109.47239 * 175.16373 * 28 26 17 30 30 C 1.47021 * 125.64764 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.47047 * 300.00262 * 1 2 3 32 32 H 1.09003 * 109.46882 * 60.00171 * 1 2 3 33 33 H 1.09002 * 109.46942 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47475 * 240.00037 * 2 1 3 35 35 H 1.09002 * 109.47375 * 119.99649 * 2 1 3 36 36 H 1.08994 * 110.36852 * 36.98478 * 6 5 3 37 37 H 1.09004 * 110.45873 * 274.71274 * 6 5 3 38 38 H 1.08994 * 111.00563 * 278.93305 * 7 6 5 39 39 H 1.09001 * 111.03544 * 155.09096 * 7 6 5 40 40 H 0.96998 * 119.99744 * 0.02562 * 12 10 8 41 41 H 1.09004 * 111.00137 * 271.94171 * 15 13 12 42 42 H 1.08996 * 110.99994 * 35.79007 * 15 13 12 43 43 H 1.08998 * 110.38502 * 204.36155 * 16 15 13 44 44 H 1.09002 * 110.23706 * 82.11456 * 16 15 13 45 45 H 0.97001 * 120.00175 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.46744 * 295.16658 * 28 26 17 47 47 H 1.09005 * 109.46729 * 55.16073 * 28 26 17 48 48 H 1.09001 * 109.47474 * 65.45736 * 29 28 26 49 49 H 1.08999 * 109.47036 * 185.45891 * 29 28 26 50 50 H 1.08997 * 109.47491 * 305.45794 * 29 28 26 51 51 H 1.09004 * 109.88371 * 61.68664 * 30 5 3 52 52 H 1.09000 * 109.88374 * 300.52324 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4210 0.6463 -0.0017 7 6 5.6528 1.3577 -0.6150 8 6 5.5100 2.7877 -0.0300 9 1 5.9278 2.8364 0.9756 10 6 6.1709 3.8002 -0.9295 11 8 5.5117 4.6836 -1.4354 12 7 7.4946 3.7241 -1.1716 13 6 8.1372 4.7087 -2.0455 14 1 7.4479 5.0472 -2.8192 15 6 8.6696 5.9102 -1.2207 16 6 9.8256 6.4164 -2.1155 17 7 10.4266 5.1972 -2.6859 18 6 11.7114 5.0804 -3.1450 19 1 12.1214 4.1048 -3.3604 20 6 12.4889 6.2157 -3.3281 21 7 11.9893 7.4047 -3.0657 22 14 14.2441 6.0558 -3.9470 23 1 14.2411 5.4041 -5.2814 24 1 14.8550 7.4049 -4.0570 25 1 15.0315 5.2316 -2.9952 26 6 9.4201 4.1256 -2.6745 27 1 9.7779 3.2872 -2.0769 28 6 9.1349 3.6642 -4.1052 29 6 8.1788 2.4702 -4.0750 30 6 3.9815 2.9983 -0.0011 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 4.1293 -0.2049 -0.6167 37 1 4.6383 0.3213 1.0159 38 1 5.5934 1.3731 -1.7032 39 1 6.5800 0.8906 -0.2830 40 1 8.0218 3.0174 -0.7671 41 1 7.9011 6.6742 -1.1027 42 1 9.0450 5.5827 -0.2513 43 1 10.5593 6.9573 -1.5179 44 1 9.4365 7.0546 -2.9089 45 1 12.5327 8.1981 -3.1932 46 1 8.6795 4.4803 -4.6661 47 1 10.0685 3.3701 -4.5849 48 1 7.2123 2.7884 -3.6841 49 1 8.0518 2.0807 -5.0851 50 1 8.5910 1.6907 -3.4342 51 1 3.6990 3.5406 0.9012 52 1 3.6672 3.5547 -0.8841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087787264.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:34 Heat of formation + Delta-G solvation = -80.219237 kcal Electronic energy + Delta-G solvation = -30279.448639 eV Core-core repulsion = 26278.037953 eV Total energy + Delta-G solvation = -4001.410685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61661 -40.68802 -39.44770 -38.05056 -35.63956 -34.32920 -33.90792 -33.52342 -32.55563 -30.77888 -30.09746 -28.19998 -26.72929 -25.94235 -24.07263 -23.57930 -23.00569 -22.03847 -21.49271 -20.67026 -20.13399 -18.78395 -18.55552 -18.11587 -17.37672 -16.87296 -16.68225 -16.51197 -16.09429 -15.69988 -15.57223 -15.46148 -15.14912 -14.61536 -14.52908 -14.30151 -14.09872 -13.81729 -13.74508 -13.54651 -13.27818 -13.22662 -13.13729 -12.92478 -12.85568 -12.68546 -12.58090 -12.55496 -12.33798 -12.20704 -12.05813 -12.05142 -11.97837 -11.89148 -11.78552 -11.54262 -11.35536 -10.93641 -10.82499 -10.65651 -9.98002 -9.68512 -8.83816 -7.82794 -5.20963 1.47866 1.50736 1.56788 1.61273 1.62995 1.82610 2.26839 2.53195 3.28570 3.35832 3.47909 3.60250 3.75391 3.84104 3.86866 3.93512 4.19490 4.20875 4.24429 4.25848 4.31305 4.37308 4.39572 4.43173 4.63030 4.63515 4.67549 4.74879 4.77250 4.81969 4.88856 4.90471 4.98264 5.02720 5.03723 5.07302 5.16488 5.19652 5.23034 5.25994 5.33307 5.37953 5.48014 5.52181 5.58087 5.69054 5.73562 6.24670 6.50055 6.61347 7.10033 7.14533 7.29325 7.78700 8.44828 9.27318 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.002216 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.954778 B =12632.234472 C =13060.953788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.511 3.489 4 O -0.599 6.599 5 N -0.621 5.621 6 C 0.096 3.904 7 C -0.118 4.118 8 C -0.109 4.109 9 H 0.146 0.854 10 C 0.522 3.478 11 O -0.587 6.587 12 N -0.693 5.693 13 C 0.156 3.844 14 H 0.071 0.929 15 C -0.142 4.142 16 C 0.179 3.821 17 N -0.613 5.613 18 C -0.228 4.228 19 H 0.086 0.914 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.976 3.024 23 H -0.279 1.279 24 H -0.300 1.300 25 H -0.273 1.273 26 C 0.160 3.840 27 H 0.060 0.940 28 C -0.128 4.128 29 C -0.132 4.132 30 C 0.118 3.882 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.134 0.866 40 H 0.417 0.583 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.046 0.954 44 H -0.014 1.014 45 H 0.246 0.754 46 H 0.029 0.971 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.061 0.939 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.415 -23.060 9.406 28.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.303 3.697 4 O -0.480 6.480 5 N -0.355 5.355 6 C -0.024 4.024 7 C -0.156 4.156 8 C -0.130 4.130 9 H 0.163 0.837 10 C 0.309 3.691 11 O -0.467 6.467 12 N -0.344 5.344 13 C 0.050 3.950 14 H 0.089 0.911 15 C -0.182 4.182 16 C 0.053 3.947 17 N -0.338 5.338 18 C -0.357 4.357 19 H 0.104 0.896 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.804 3.196 23 H -0.205 1.205 24 H -0.227 1.227 25 H -0.199 1.199 26 C 0.053 3.947 27 H 0.078 0.922 28 C -0.168 4.168 29 C -0.189 4.189 30 C -0.006 4.006 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.255 0.745 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.004 0.996 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.093 0.907 51 H 0.079 0.921 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.182 -21.862 9.004 28.098 hybrid contribution 1.185 1.205 -0.609 1.797 sum -13.997 -20.657 8.395 26.327 Atomic orbital electron populations 1.21562 0.93791 1.02752 1.01603 1.21683 0.97782 0.90512 1.06795 1.21459 0.80189 0.93335 0.74758 1.90699 1.55949 1.48880 1.52442 1.48708 1.05841 1.08208 1.72763 1.22730 0.85012 0.91128 1.03580 1.22949 1.00724 0.90803 1.01143 1.22298 0.93659 0.95651 1.01412 0.83684 1.20809 0.81887 0.85332 0.81032 1.90731 1.64557 1.38233 1.53217 1.45714 1.08158 1.31617 1.48938 1.21604 0.92981 0.88519 0.91872 0.91064 1.23200 0.97811 0.97985 0.99191 1.21132 0.91950 0.88670 0.92947 1.44692 1.08614 1.08317 1.72186 1.19289 0.87585 0.93000 1.35845 0.89639 1.25704 1.02800 0.95136 1.02437 1.70144 1.37050 0.97465 1.55419 0.85193 0.79797 0.76055 0.78534 1.20475 1.22681 1.19881 1.21271 0.87408 0.91183 0.94789 0.92242 1.21922 0.99242 0.97873 0.97741 1.21634 0.98231 0.97071 1.02004 1.21598 0.91746 0.85630 1.01595 0.93674 0.94103 0.89167 0.86392 0.85843 0.87481 0.87765 0.90863 0.84761 0.74465 0.92046 0.90383 0.93564 0.99558 0.94516 0.95219 0.93234 0.93420 0.92593 0.90685 0.92061 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.20 71.98 0.66 -1.11 16 2 C -0.13 -1.28 5.43 29.85 0.16 -1.12 16 3 C 0.51 10.60 7.85 87.66 0.69 11.29 16 4 O -0.60 -19.21 16.31 -3.02 -0.05 -19.26 16 5 N -0.62 -10.47 3.33 -811.80 -2.70 -13.17 16 6 C 0.10 0.57 6.69 86.85 0.58 1.15 16 7 C -0.12 -0.86 6.47 31.99 0.21 -0.65 16 8 C -0.11 -1.60 3.34 -10.35 -0.03 -1.64 16 9 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 10 C 0.52 12.79 7.15 87.66 0.63 13.42 16 11 O -0.59 -21.10 15.11 -3.03 -0.05 -21.15 16 12 N -0.69 -15.81 4.90 -436.91 -2.14 -17.95 16 13 C 0.16 5.21 2.09 46.18 0.10 5.30 16 14 H 0.07 2.76 7.18 -2.38 -0.02 2.75 16 15 C -0.14 -5.41 6.76 31.91 0.22 -5.19 16 16 C 0.18 8.84 5.45 86.78 0.47 9.32 16 17 N -0.61 -29.72 3.13 -668.70 -2.09 -31.81 16 18 C -0.23 -12.09 9.73 84.03 0.82 -11.28 16 19 H 0.09 4.26 7.83 -2.91 -0.02 4.23 16 20 C -0.07 -3.77 5.47 84.86 0.46 -3.30 16 21 N -0.95 -56.91 10.48 21.65 0.23 -56.68 16 22 Si 0.98 44.70 29.55 68.60 2.03 46.73 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.16 5.82 2.92 45.34 0.13 5.95 16 27 H 0.06 1.92 7.72 -2.39 -0.02 1.90 16 28 C -0.13 -4.44 5.43 30.59 0.17 -4.27 16 29 C -0.13 -3.20 9.64 71.98 0.69 -2.51 16 30 C 0.12 2.60 6.26 86.73 0.54 3.14 16 31 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.04 0.68 8.10 -2.39 -0.02 0.67 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.12 0.61 7.84 -2.39 -0.02 0.59 16 35 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.11 0.16 7.47 -2.39 -0.02 0.14 16 37 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.07 0.77 8.04 -2.39 -0.02 0.75 16 39 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.42 6.43 8.36 -92.71 -0.78 5.66 16 41 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.05 2.57 6.74 -2.39 -0.02 2.55 16 44 H -0.01 -0.76 8.11 -2.39 -0.02 -0.78 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 46 H 0.03 1.16 8.03 -2.39 -0.02 1.14 16 47 H 0.05 1.86 7.85 -2.38 -0.02 1.84 16 48 H 0.05 1.17 7.47 -2.39 -0.02 1.16 16 49 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 52 H 0.05 1.45 6.88 -2.39 -0.02 1.44 16 Total: -1.00 -82.90 409.46 1.84 -81.06 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.12 Total: 13.74 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 6.50 Total: 18.49 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -6.71 Total: -119.61 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.10 Total: -40.41 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -82.90 1.84 -81.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087787264.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.843 kcal (2) G-P(sol) polarization free energy of solvation -82.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds