Wall clock time and date at job start Tue Mar 31 2020 20:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46957 * 2 1 4 4 O 1.21280 * 119.99994 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00282 * 180.02562 * 3 2 1 6 6 C 1.47022 * 125.64219 * 0.02598 * 5 3 2 7 7 C 1.54329 * 107.26944 * 178.92126 * 6 5 3 8 8 C 1.55157 * 102.93959 * 337.80265 * 7 6 5 9 9 H 1.08997 * 111.00631 * 277.38932 * 8 7 6 10 10 C 1.50701 * 111.00350 * 153.57558 * 8 7 6 11 11 O 1.21283 * 119.99920 * 241.45810 * 10 8 7 12 12 N 1.34778 * 119.99860 * 61.45402 * 10 8 7 13 13 C 1.46501 * 119.99875 * 179.97438 * 12 10 8 14 14 H 1.08997 * 110.64397 * 325.70691 * 13 12 10 15 15 C 1.55164 * 110.86785 * 88.95309 * 13 12 10 16 16 C 1.54908 * 101.57735 * 153.93604 * 15 13 12 17 17 N 1.47418 * 104.83548 * 322.98905 * 16 15 13 18 18 C 1.36943 * 125.65164 * 204.16760 * 17 16 15 19 19 H 1.07994 * 120.00027 * 165.32240 * 18 17 16 20 20 C 1.38809 * 119.99774 * 345.32945 * 18 17 16 21 21 N 1.31619 * 119.99819 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00095 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46989 * 59.99358 * 22 20 18 24 24 H 1.48497 * 109.47236 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46997 * 299.99607 * 22 20 18 26 26 C 1.47019 * 108.70552 * 24.12980 * 17 16 15 27 27 H 1.09006 * 109.88707 * 239.52830 * 26 17 16 28 28 C 1.52997 * 109.88717 * 118.35629 * 26 17 16 29 29 C 1.53000 * 109.47513 * 176.98871 * 28 26 17 30 30 C 1.47416 * 125.65225 * 180.02562 * 5 3 2 31 31 H 1.08997 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46929 * 299.99951 * 1 2 3 33 33 H 1.09003 * 109.47217 * 60.00027 * 1 2 3 34 34 H 1.09000 * 109.47589 * 240.00399 * 2 1 3 35 35 H 1.08995 * 109.47096 * 119.99644 * 2 1 3 36 36 H 1.08995 * 109.88787 * 59.50356 * 6 5 3 37 37 H 1.09007 * 110.01243 * 298.40447 * 6 5 3 38 38 H 1.09001 * 110.72084 * 219.44371 * 7 6 5 39 39 H 1.08999 * 110.87421 * 96.23950 * 7 6 5 40 40 H 0.96994 * 119.99887 * 0.02562 * 12 10 8 41 41 H 1.08995 * 111.00280 * 272.00558 * 15 13 12 42 42 H 1.08996 * 111.00644 * 35.86487 * 15 13 12 43 43 H 1.09001 * 110.36526 * 204.14830 * 16 15 13 44 44 H 1.09002 * 110.46473 * 81.87509 * 16 15 13 45 45 H 0.97005 * 119.99756 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.47175 * 296.99502 * 28 26 17 47 47 H 1.09010 * 109.46767 * 56.98877 * 28 26 17 48 48 H 1.08993 * 109.47196 * 185.57363 * 29 28 26 49 49 H 1.08999 * 109.47276 * 305.58145 * 29 28 26 50 50 H 1.08997 * 109.46730 * 65.57566 * 29 28 26 51 51 H 1.08996 * 110.36890 * 85.30527 * 30 5 3 52 52 H 1.08999 * 110.36524 * 322.98756 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6673 -0.0005 6 6 4.4181 0.6492 -0.0017 7 6 5.7689 1.3950 -0.0296 8 6 5.3885 2.7811 -0.6139 9 1 5.3394 2.7463 -1.7022 10 6 6.3520 3.8444 -0.1533 11 8 5.9523 4.7804 0.5063 12 7 7.6580 3.7550 -0.4742 13 6 8.5946 4.7890 -0.0269 14 1 8.1103 5.7653 -0.0113 15 6 9.1755 4.4418 1.3693 16 6 10.5319 5.1892 1.3363 17 7 11.0077 5.0467 -0.0517 18 6 12.3132 5.1169 -0.4592 19 1 12.5911 4.7699 -1.4434 20 6 13.2793 5.6340 0.3929 21 7 12.9405 6.0572 1.5922 22 14 15.0601 5.7305 -0.1631 23 1 15.1550 6.5850 -1.3739 24 1 15.8865 6.3171 0.9223 25 1 15.5543 4.3665 -0.4800 26 6 9.8486 4.8157 -0.9261 27 1 9.9564 3.8606 -1.4403 28 6 9.7326 5.9494 -1.9469 29 6 8.5697 5.6618 -2.8987 30 6 3.9832 3.0020 -0.0001 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.3250 0.0177 -0.8851 37 1 4.3503 0.0388 0.8990 38 1 6.4783 0.8838 -0.6804 39 1 6.1761 1.4990 0.9761 40 1 7.9776 3.0066 -1.0020 41 1 8.5370 4.8262 2.1647 42 1 9.3240 3.3672 1.4746 43 1 11.2364 4.7274 2.0281 44 1 10.3933 6.2417 1.5835 45 1 13.6156 6.4189 2.1876 46 1 9.5522 6.8899 -1.4265 47 1 10.6592 6.0214 -2.5167 48 1 8.5483 6.4166 -3.6847 49 1 8.7006 4.6761 -3.3450 50 1 7.6316 5.6879 -2.3443 51 1 4.0690 3.3804 1.0185 52 1 3.4051 3.6922 -0.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087787265.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:38 Heat of formation + Delta-G solvation = -58.127332 kcal Electronic energy + Delta-G solvation = -30153.480746 eV Core-core repulsion = 26153.028038 eV Total energy + Delta-G solvation = -4000.452708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.69518 -39.63618 -38.07397 -37.10396 -34.10448 -33.26240 -32.82636 -32.13192 -31.48321 -29.53418 -28.97280 -26.77873 -25.62116 -24.41572 -23.11629 -22.72988 -21.89850 -20.44856 -20.15422 -19.51154 -19.31170 -17.62736 -17.47516 -16.89001 -16.18348 -15.81515 -15.64665 -15.17651 -14.81883 -14.63197 -14.21267 -13.95715 -13.86967 -13.77233 -13.55430 -13.20959 -13.15180 -12.73846 -12.69457 -12.56592 -12.30396 -12.04682 -11.99357 -11.94686 -11.68643 -11.57101 -11.54382 -11.24153 -11.17579 -10.92010 -10.86488 -10.64621 -10.48867 -10.31013 -10.13467 -10.11962 -9.80896 -9.68877 -9.62990 -8.96112 -8.70031 -8.60147 -6.84481 -5.78713 -3.15383 2.35956 2.56624 2.67507 3.29626 3.36878 3.41763 3.42570 3.95323 4.10645 4.38738 4.44372 4.49637 4.69538 4.72244 4.84545 4.90900 4.97105 5.08089 5.21303 5.25206 5.32289 5.38456 5.42640 5.47422 5.51355 5.52667 5.60588 5.64687 5.71185 5.76577 5.76958 5.81905 5.86623 5.96338 6.02118 6.18653 6.25751 6.37157 6.42762 6.52900 6.63719 6.69818 6.91411 7.10307 7.18156 7.46927 7.56900 7.65561 7.75267 7.88029 8.22589 8.32451 9.14480 9.75537 10.43213 11.33097 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.002166 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.781323 B =12922.530175 C =13157.986643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.526 3.474 4 O -0.538 6.538 5 N -0.623 5.623 6 C 0.102 3.898 7 C -0.123 4.123 8 C -0.125 4.125 9 H 0.111 0.889 10 C 0.524 3.476 11 O -0.537 6.537 12 N -0.710 5.710 13 C 0.137 3.863 14 H 0.093 0.907 15 C -0.155 4.155 16 C 0.174 3.826 17 N -0.594 5.594 18 C -0.229 4.229 19 H 0.074 0.926 20 C -0.003 4.003 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.161 3.839 27 H 0.034 0.966 28 C -0.132 4.132 29 C -0.146 4.146 30 C 0.126 3.874 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.397 0.603 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.028 0.972 45 H 0.254 0.746 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.046 0.954 50 H 0.047 0.953 51 H 0.083 0.917 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 -14.837 -5.298 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.315 3.685 4 O -0.415 6.415 5 N -0.358 5.358 6 C -0.021 4.021 7 C -0.161 4.161 8 C -0.148 4.148 9 H 0.129 0.871 10 C 0.308 3.692 11 O -0.414 6.414 12 N -0.360 5.360 13 C 0.033 3.967 14 H 0.111 0.889 15 C -0.195 4.195 16 C 0.048 3.952 17 N -0.318 5.318 18 C -0.358 4.358 19 H 0.092 0.908 20 C -0.200 4.200 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.053 3.947 27 H 0.052 0.948 28 C -0.172 4.172 29 C -0.204 4.204 30 C 0.004 3.996 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.232 0.768 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.101 0.899 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.398 -13.601 -4.696 23.357 hybrid contribution 1.358 -0.254 -0.584 1.500 sum -17.040 -13.855 -5.280 22.587 Atomic orbital electron populations 1.21545 0.92930 1.01617 1.03460 1.21618 0.98587 0.93430 1.04258 1.20497 0.80193 0.92015 0.75824 1.90726 1.54244 1.46792 1.49738 1.48570 1.05251 1.08138 1.73869 1.22054 0.86527 0.91347 1.02202 1.22674 0.96599 0.93684 1.03158 1.22484 0.94975 0.94885 1.02406 0.87096 1.20018 0.82747 0.86399 0.80022 1.90736 1.77759 1.33959 1.38917 1.46041 1.07414 1.27296 1.55221 1.22123 0.88694 0.91054 0.94828 0.88892 1.23407 0.99683 1.00776 0.95628 1.21431 0.89591 0.96794 0.87339 1.44433 1.00754 1.84873 1.01764 1.18876 0.81832 1.34767 1.00286 0.90781 1.24919 0.98454 0.99793 0.96867 1.69917 1.32536 1.46369 1.07384 0.86233 0.84439 0.77738 0.77522 1.21092 1.21596 1.21130 1.21072 0.86905 0.95864 0.90826 0.94799 1.22020 0.97724 0.99973 0.97496 1.21766 0.98993 1.00510 0.99141 1.21993 0.90638 0.84498 1.02488 0.92005 0.91921 0.91953 0.88964 0.88948 0.90879 0.90839 0.88857 0.89530 0.76840 0.91937 0.92080 0.90836 0.95401 0.93539 0.92359 0.91715 0.93685 0.93489 0.93350 0.89852 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.14 -0.89 5.61 -27.88 -0.16 -1.04 16 3 C 0.53 5.56 7.85 -10.98 -0.09 5.47 16 4 O -0.54 -8.01 16.24 5.56 0.09 -7.92 16 5 N -0.62 -5.82 3.33 -170.51 -0.57 -6.38 16 6 C 0.10 0.59 6.49 -3.06 -0.02 0.57 16 7 C -0.12 -0.79 6.37 -24.89 -0.16 -0.94 16 8 C -0.13 -1.13 3.44 -89.61 -0.31 -1.44 16 9 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.52 6.78 7.16 -10.98 -0.08 6.70 16 11 O -0.54 -9.31 15.49 5.56 0.09 -9.23 16 12 N -0.71 -9.01 4.87 -52.02 -0.25 -9.26 16 13 C 0.14 2.32 1.97 -66.09 -0.13 2.19 16 14 H 0.09 1.75 7.26 -51.93 -0.38 1.38 16 15 C -0.16 -2.88 6.78 -24.58 -0.17 -3.05 16 16 C 0.17 4.07 5.41 -2.53 -0.01 4.06 16 17 N -0.59 -14.17 3.13 -162.58 -0.51 -14.67 16 18 C -0.23 -6.04 9.75 -15.06 -0.15 -6.19 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C 0.00 -0.08 5.47 -17.43 -0.10 -0.18 16 21 N -0.92 -26.13 10.58 55.49 0.59 -25.55 16 22 Si 0.91 21.43 29.55 -169.99 -5.02 16.40 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.16 3.04 2.94 -66.95 -0.20 2.84 16 27 H 0.03 0.62 7.70 -51.93 -0.40 0.22 16 28 C -0.13 -2.38 5.41 -26.73 -0.14 -2.52 16 29 C -0.15 -2.06 9.57 37.16 0.36 -1.71 16 30 C 0.13 1.40 5.97 -2.52 -0.02 1.39 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.40 4.02 8.34 -40.82 -0.34 3.68 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 44 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 47 H 0.06 1.25 7.90 -51.92 -0.41 0.84 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.05 0.68 7.40 -51.93 -0.38 0.30 16 51 H 0.08 1.09 7.51 -51.93 -0.39 0.70 16 52 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 LS Contribution 411.01 15.07 6.19 6.19 Total: -1.00 -33.36 411.01 -9.79 -43.15 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -9.37 Total: 1.73 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.02 Total: 5.54 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.74 Total: -55.87 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.18 Total: -17.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.36 -9.79 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087787265.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.981 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds