Wall clock time and date at job start Tue Mar 31 2020 20:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46779 * 2 1 4 4 H 1.08999 * 110.00372 * 56.17287 * 3 2 1 5 5 C 1.54327 * 109.88153 * 295.07749 * 3 2 1 6 6 H 1.08993 * 110.71878 * 336.93403 * 5 3 2 7 7 N 1.46502 * 110.71571 * 100.03167 * 5 3 2 8 8 C 1.34781 * 119.99719 * 202.55786 * 7 5 3 9 9 O 1.21285 * 119.99883 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00149 * 180.02562 * 8 7 5 11 11 C 1.52997 * 110.88651 * 56.11372 * 10 8 7 12 12 C 1.55158 * 111.00702 * 180.02562 * 10 8 7 13 13 C 1.54318 * 102.94321 * 82.56935 * 12 10 8 14 14 N 1.47019 * 107.27476 * 22.19466 * 13 12 10 15 15 C 1.34774 * 125.64856 * 181.02311 * 14 13 12 16 16 C 1.50697 * 120.00049 * 0.02574 * 15 14 13 17 17 O 1.21283 * 120.00123 * 180.02562 * 15 14 13 18 18 C 1.47429 * 108.70043 * 1.28578 * 14 13 12 19 19 C 1.55157 * 103.10195 * 218.47804 * 5 3 2 20 20 C 1.54910 * 101.58057 * 35.41755 * 19 5 3 21 21 N 1.47324 * 110.06192 * 177.34838 * 3 2 1 22 22 C 1.36933 * 125.61379 * 298.24568 * 21 3 2 23 23 H 1.07996 * 120.00434 * 347.98196 * 22 21 3 24 24 C 1.38818 * 119.99698 * 167.98565 * 22 21 3 25 25 N 1.31615 * 120.00244 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99730 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47111 * 89.99837 * 26 24 22 28 28 H 1.48501 * 109.46731 * 209.99564 * 26 24 22 29 29 H 1.48497 * 109.47127 * 329.99599 * 26 24 22 30 30 H 1.08998 * 109.47314 * 185.50382 * 1 2 3 31 31 H 1.09006 * 109.47483 * 305.50516 * 1 2 3 32 32 H 1.09004 * 109.47473 * 65.50899 * 1 2 3 33 33 H 1.08996 * 109.47335 * 239.99856 * 2 1 3 34 34 H 1.08991 * 109.47003 * 119.99553 * 2 1 3 35 35 H 0.96998 * 120.00264 * 22.56253 * 7 5 3 36 36 H 1.09000 * 109.47256 * 183.87814 * 11 10 8 37 37 H 1.08997 * 109.47829 * 303.88454 * 11 10 8 38 38 H 1.09011 * 109.46660 * 63.88792 * 11 10 8 39 39 H 1.08999 * 110.71687 * 324.20463 * 12 10 8 40 40 H 1.08995 * 110.87337 * 201.00880 * 12 10 8 41 41 H 1.09001 * 109.88042 * 262.77414 * 13 12 10 42 42 H 1.09003 * 110.01189 * 141.68859 * 13 12 10 43 43 H 1.09001 * 109.47558 * 60.00081 * 16 15 14 44 44 H 1.09004 * 109.47122 * 180.02562 * 16 15 14 45 45 H 1.09003 * 109.47321 * 299.99575 * 16 15 14 46 46 H 1.08997 * 110.36273 * 94.48205 * 18 14 13 47 47 H 1.08999 * 110.36378 * 216.80597 * 18 14 13 48 48 H 1.09001 * 111.00719 * 153.48651 * 19 5 3 49 49 H 1.08996 * 111.00936 * 277.34053 * 19 5 3 50 50 H 1.08998 * 110.37071 * 81.82637 * 20 19 5 51 51 H 1.09008 * 110.36452 * 204.15129 * 20 19 5 52 52 H 0.96994 * 120.00475 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6266 1.9841 0.8509 5 6 1.6349 2.1423 -1.3145 6 1 1.4533 1.4101 -2.1011 7 7 0.4538 2.9848 -1.1104 8 6 -0.3280 3.3143 -2.1577 9 8 -0.0534 2.9137 -3.2691 10 6 -1.5425 4.1814 -1.9481 11 6 -1.1600 5.5038 -1.2804 12 6 -2.2873 4.4285 -3.2866 13 6 -3.1495 3.1582 -3.4421 14 7 -3.3153 2.5763 -2.1021 15 6 -3.9900 1.4456 -1.8148 16 6 -4.6542 0.6634 -2.9184 17 8 -4.0627 1.0576 -0.6680 18 6 -2.6266 3.4381 -1.1241 19 6 2.8770 3.0101 -1.6482 20 6 4.0318 2.1024 -1.1558 21 7 3.5117 1.4583 0.0640 22 6 4.2707 0.9552 1.0866 23 1 3.8035 0.6770 2.0197 24 6 5.6409 0.8029 0.9240 25 7 6.2103 1.1416 -0.2133 26 14 6.6764 0.1159 2.3187 27 1 6.7486 -1.3625 2.1999 28 1 8.0457 0.6859 2.2458 29 1 6.0580 0.4784 3.6193 30 1 -0.3634 -1.0229 0.0986 31 1 -0.3634 0.5969 0.8366 32 1 -0.3634 0.4260 -0.9352 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.2345 3.3056 -0.2217 36 1 -2.0612 6.0823 -1.0774 37 1 -0.6397 5.3011 -0.3443 38 1 -0.5065 6.0701 -1.9441 39 1 -1.5796 4.5176 -4.1108 40 1 -2.9165 5.3163 -3.2228 41 1 -2.6458 2.4460 -4.0957 42 1 -4.1237 3.4170 -3.8570 43 1 -3.9030 0.3452 -3.6412 44 1 -5.1473 -0.2126 -2.4969 45 1 -5.3933 1.2919 -3.4153 46 1 -3.3270 4.1490 -0.6857 47 1 -2.1622 2.8326 -0.3458 48 1 2.9515 3.1897 -2.7207 49 1 2.8566 3.9501 -1.0968 50 1 4.2715 1.3515 -1.9086 51 1 4.9121 2.7015 -0.9225 52 1 7.1676 1.0348 -0.3271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087787711.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:56 Heat of formation + Delta-G solvation = -53.396048 kcal Electronic energy + Delta-G solvation = -31627.674756 eV Core-core repulsion = 27627.427212 eV Total energy + Delta-G solvation = -4000.247544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.94422 -39.40478 -38.09341 -36.89386 -34.17868 -33.44118 -32.69134 -31.65385 -30.16056 -29.94309 -28.89859 -26.63154 -26.39615 -24.61636 -23.59712 -22.87425 -21.74407 -20.28999 -20.04779 -19.59850 -18.98396 -17.41729 -16.96942 -16.83413 -16.17501 -15.88587 -15.27078 -14.84512 -14.77691 -14.46359 -14.15882 -13.92234 -13.81289 -13.47529 -13.26481 -13.19427 -13.10936 -12.78120 -12.67825 -12.59173 -12.55039 -12.26933 -12.00484 -11.91839 -11.63684 -11.55100 -11.42859 -11.15142 -11.06684 -10.88137 -10.83895 -10.59025 -10.43168 -10.27163 -10.07524 -10.05947 -9.75437 -9.63350 -9.53695 -8.88489 -8.65775 -8.57315 -6.83026 -5.74102 -3.10454 2.46054 2.68813 2.76530 3.25406 3.39307 3.44848 3.46080 3.95877 4.24774 4.44198 4.50646 4.55924 4.78078 4.88537 4.98628 5.03266 5.12738 5.23681 5.27694 5.30723 5.36631 5.38647 5.48754 5.50872 5.52847 5.56191 5.58845 5.63785 5.78425 5.79836 5.81540 5.86505 5.89495 6.01679 6.09981 6.24015 6.30661 6.43020 6.50866 6.57714 6.67432 6.74573 6.95919 7.14318 7.27797 7.52137 7.58837 7.70369 7.79353 7.96651 8.25975 8.36877 9.18380 9.79087 10.46090 11.36843 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.003165 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.972586 B = 8844.205905 C = 9678.811104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.139 3.861 6 H 0.091 0.909 7 N -0.709 5.709 8 C 0.530 3.470 9 O -0.538 6.538 10 C -0.100 4.100 11 C -0.135 4.135 12 C -0.109 4.109 13 C 0.102 3.898 14 N -0.619 5.619 15 C 0.526 3.474 16 C -0.169 4.169 17 O -0.544 6.544 18 C 0.119 3.881 19 C -0.155 4.155 20 C 0.173 3.827 21 N -0.595 5.595 22 C -0.226 4.226 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.918 5.918 26 Si 0.911 3.089 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.396 0.604 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.024 0.976 51 H 0.080 0.920 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.717 8.436 -6.881 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.035 3.965 6 H 0.109 0.891 7 N -0.359 5.359 8 C 0.315 3.685 9 O -0.415 6.415 10 C -0.104 4.104 11 C -0.192 4.192 12 C -0.147 4.147 13 C -0.021 4.021 14 N -0.355 5.355 15 C 0.316 3.684 16 C -0.229 4.229 17 O -0.421 6.421 18 C -0.004 4.004 19 C -0.194 4.194 20 C 0.048 3.952 21 N -0.319 5.319 22 C -0.354 4.354 23 H 0.094 0.906 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.042 0.958 51 H 0.098 0.902 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.344 7.793 -7.008 22.885 hybrid contribution 0.537 -0.297 1.030 1.199 sum -19.807 7.496 -5.978 22.005 Atomic orbital electron populations 1.21716 0.96877 1.00564 1.00798 1.22003 0.93682 0.99075 1.02297 1.21123 0.86974 0.93373 0.93256 0.94738 1.22101 0.83411 0.92340 0.98661 0.89095 1.46047 1.27435 1.52057 1.10352 1.19941 0.83274 0.80438 0.84855 1.90674 1.72618 1.54338 1.23882 1.22053 0.93799 0.96531 0.98000 1.21720 1.02514 0.94096 1.00908 1.22593 0.98234 0.96913 0.96940 1.22074 0.99695 0.95791 0.84519 1.48499 1.53466 1.24494 1.09012 1.20487 0.78073 0.79322 0.90505 1.21895 1.01762 1.01052 0.98176 1.90743 1.60859 1.68075 1.22418 1.22295 0.92954 0.93207 0.91908 1.23412 0.96759 0.99056 1.00218 1.21484 0.93361 0.92996 0.87402 1.44537 0.98296 1.68563 1.20531 1.18966 0.89078 1.35576 0.91813 0.90648 1.24863 0.96984 1.01166 0.97142 1.69917 1.10116 1.52753 1.23702 0.86144 0.79743 0.78799 0.81224 1.21552 1.21699 1.20655 0.93727 0.93491 0.93637 0.92468 0.91762 0.76926 0.91094 0.91466 0.91130 0.88423 0.89818 0.90510 0.91233 0.89288 0.88951 0.89549 0.90280 0.89821 0.91994 0.92065 0.95770 0.90199 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.57 37.16 0.36 -1.97 16 2 C -0.13 -2.52 5.42 -26.73 -0.14 -2.67 16 3 C 0.16 3.22 2.95 -66.79 -0.20 3.02 16 4 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 5 C 0.14 2.49 1.95 -66.09 -0.13 2.36 16 6 H 0.09 1.80 7.25 -51.93 -0.38 1.42 16 7 N -0.71 -10.02 4.77 -52.03 -0.25 -10.27 16 8 C 0.53 7.21 6.44 -10.99 -0.07 7.14 16 9 O -0.54 -9.10 15.27 5.55 0.08 -9.02 16 10 C -0.10 -0.94 0.81 -153.39 -0.12 -1.07 16 11 C -0.13 -0.97 8.58 37.16 0.32 -0.65 16 12 C -0.11 -0.86 5.61 -24.90 -0.14 -1.00 16 13 C 0.10 0.84 6.18 -3.07 -0.02 0.82 16 14 N -0.62 -6.53 3.31 -170.38 -0.56 -7.10 16 15 C 0.53 6.38 7.96 -10.99 -0.09 6.29 16 16 C -0.17 -1.35 9.51 36.00 0.34 -1.01 16 17 O -0.54 -8.85 17.34 5.55 0.10 -8.76 16 18 C 0.12 1.19 5.84 -2.41 -0.01 1.18 16 19 C -0.15 -2.98 6.77 -24.58 -0.17 -3.15 16 20 C 0.17 4.15 5.46 -2.53 -0.01 4.14 16 21 N -0.59 -14.69 3.14 -162.34 -0.51 -15.20 16 22 C -0.23 -6.13 9.80 -15.06 -0.15 -6.28 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 24 C 0.00 -0.14 5.47 -17.43 -0.10 -0.23 16 25 N -0.92 -26.57 10.47 55.49 0.58 -25.99 16 26 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.76 7.38 -51.93 -0.38 0.38 16 33 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 34 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 35 H 0.40 4.86 7.57 -40.82 -0.31 4.55 16 36 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.07 0.48 7.37 -51.93 -0.38 0.10 16 38 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.10 0.89 7.41 -51.93 -0.38 0.51 16 40 H 0.08 0.46 8.04 -51.93 -0.42 0.05 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.66 7.99 -51.93 -0.41 0.24 16 47 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 51 H 0.08 2.13 6.73 -51.92 -0.35 1.78 16 52 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 408.58 15.07 6.16 6.16 Total: -1.00 -33.66 408.58 -9.03 -42.70 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -9.27 Total: 3.69 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.33 Total: 6.92 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.74 Total: -58.56 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.18 Total: -17.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.66 -9.03 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087787711.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.701 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds