Wall clock time and date at job start Tue Mar 31 2020 20:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46779 * 2 1 4 4 H 1.08999 * 110.00372 * 56.17287 * 3 2 1 5 5 C 1.54327 * 109.88153 * 295.07749 * 3 2 1 6 6 H 1.08993 * 110.71878 * 336.93403 * 5 3 2 7 7 N 1.46502 * 110.71571 * 100.03167 * 5 3 2 8 8 C 1.34781 * 119.99719 * 202.55786 * 7 5 3 9 9 O 1.21285 * 119.99883 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00149 * 180.02562 * 8 7 5 11 11 C 1.52997 * 110.88651 * 56.11372 * 10 8 7 12 12 C 1.55158 * 111.00702 * 180.02562 * 10 8 7 13 13 C 1.54318 * 102.94321 * 82.56935 * 12 10 8 14 14 N 1.47019 * 107.27476 * 22.19466 * 13 12 10 15 15 C 1.34774 * 125.64856 * 181.02311 * 14 13 12 16 16 C 1.50697 * 120.00049 * 0.02574 * 15 14 13 17 17 O 1.21283 * 120.00123 * 180.02562 * 15 14 13 18 18 C 1.47429 * 108.70043 * 1.28578 * 14 13 12 19 19 C 1.55157 * 103.10195 * 218.47804 * 5 3 2 20 20 C 1.54910 * 101.58057 * 35.41755 * 19 5 3 21 21 N 1.47324 * 110.06192 * 177.34838 * 3 2 1 22 22 C 1.36933 * 125.61379 * 298.24568 * 21 3 2 23 23 H 1.07996 * 120.00434 * 347.98196 * 22 21 3 24 24 C 1.38818 * 119.99698 * 167.98565 * 22 21 3 25 25 N 1.31615 * 120.00244 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99730 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47111 * 89.99837 * 26 24 22 28 28 H 1.48501 * 109.46731 * 209.99564 * 26 24 22 29 29 H 1.48497 * 109.47127 * 329.99599 * 26 24 22 30 30 H 1.08998 * 109.47314 * 185.50382 * 1 2 3 31 31 H 1.09006 * 109.47483 * 305.50516 * 1 2 3 32 32 H 1.09004 * 109.47473 * 65.50899 * 1 2 3 33 33 H 1.08996 * 109.47335 * 239.99856 * 2 1 3 34 34 H 1.08991 * 109.47003 * 119.99553 * 2 1 3 35 35 H 0.96998 * 120.00264 * 22.56253 * 7 5 3 36 36 H 1.09000 * 109.47256 * 183.87814 * 11 10 8 37 37 H 1.08997 * 109.47829 * 303.88454 * 11 10 8 38 38 H 1.09011 * 109.46660 * 63.88792 * 11 10 8 39 39 H 1.08999 * 110.71687 * 324.20463 * 12 10 8 40 40 H 1.08995 * 110.87337 * 201.00880 * 12 10 8 41 41 H 1.09001 * 109.88042 * 262.77414 * 13 12 10 42 42 H 1.09003 * 110.01189 * 141.68859 * 13 12 10 43 43 H 1.09001 * 109.47558 * 60.00081 * 16 15 14 44 44 H 1.09004 * 109.47122 * 180.02562 * 16 15 14 45 45 H 1.09003 * 109.47321 * 299.99575 * 16 15 14 46 46 H 1.08997 * 110.36273 * 94.48205 * 18 14 13 47 47 H 1.08999 * 110.36378 * 216.80597 * 18 14 13 48 48 H 1.09001 * 111.00719 * 153.48651 * 19 5 3 49 49 H 1.08996 * 111.00936 * 277.34053 * 19 5 3 50 50 H 1.08998 * 110.37071 * 81.82637 * 20 19 5 51 51 H 1.09008 * 110.36452 * 204.15129 * 20 19 5 52 52 H 0.96994 * 120.00475 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6266 1.9841 0.8509 5 6 1.6349 2.1423 -1.3145 6 1 1.4533 1.4101 -2.1011 7 7 0.4538 2.9848 -1.1104 8 6 -0.3280 3.3143 -2.1577 9 8 -0.0534 2.9137 -3.2691 10 6 -1.5425 4.1814 -1.9481 11 6 -1.1600 5.5038 -1.2804 12 6 -2.2873 4.4285 -3.2866 13 6 -3.1495 3.1582 -3.4421 14 7 -3.3153 2.5763 -2.1021 15 6 -3.9900 1.4456 -1.8148 16 6 -4.6542 0.6634 -2.9184 17 8 -4.0627 1.0576 -0.6680 18 6 -2.6266 3.4381 -1.1241 19 6 2.8770 3.0101 -1.6482 20 6 4.0318 2.1024 -1.1558 21 7 3.5117 1.4583 0.0640 22 6 4.2707 0.9552 1.0866 23 1 3.8035 0.6770 2.0197 24 6 5.6409 0.8029 0.9240 25 7 6.2103 1.1416 -0.2133 26 14 6.6764 0.1159 2.3187 27 1 6.7486 -1.3625 2.1999 28 1 8.0457 0.6859 2.2458 29 1 6.0580 0.4784 3.6193 30 1 -0.3634 -1.0229 0.0986 31 1 -0.3634 0.5969 0.8366 32 1 -0.3634 0.4260 -0.9352 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.2345 3.3056 -0.2217 36 1 -2.0612 6.0823 -1.0774 37 1 -0.6397 5.3011 -0.3443 38 1 -0.5065 6.0701 -1.9441 39 1 -1.5796 4.5176 -4.1108 40 1 -2.9165 5.3163 -3.2228 41 1 -2.6458 2.4460 -4.0957 42 1 -4.1237 3.4170 -3.8570 43 1 -3.9030 0.3452 -3.6412 44 1 -5.1473 -0.2126 -2.4969 45 1 -5.3933 1.2919 -3.4153 46 1 -3.3270 4.1490 -0.6857 47 1 -2.1622 2.8326 -0.3458 48 1 2.9515 3.1897 -2.7207 49 1 2.8566 3.9501 -1.0968 50 1 4.2715 1.3515 -1.9086 51 1 4.9121 2.7015 -0.9225 52 1 7.1676 1.0348 -0.3271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087787711.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:55 Heat of formation + Delta-G solvation = -75.632745 kcal Electronic energy + Delta-G solvation = -31628.639012 eV Core-core repulsion = 27627.427212 eV Total energy + Delta-G solvation = -4001.211800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89323 -40.54450 -39.50298 -37.97991 -35.68324 -34.59380 -34.09544 -33.40843 -31.03133 -30.81059 -30.40771 -28.16764 -27.11421 -26.46541 -24.59884 -23.97226 -23.09844 -22.05537 -21.49926 -20.42600 -20.18878 -18.77711 -18.32644 -17.82270 -17.44779 -16.94412 -16.70573 -16.20561 -15.95093 -15.75815 -15.55887 -15.40664 -15.04894 -14.59203 -14.35039 -14.31632 -13.93027 -13.86199 -13.75636 -13.60999 -13.51949 -13.31862 -13.24435 -13.16392 -12.99969 -12.90649 -12.75325 -12.63794 -12.28069 -12.19810 -12.12362 -12.08401 -12.00807 -11.91377 -11.75134 -11.58942 -11.40909 -10.99354 -10.75567 -10.66875 -9.99416 -9.68766 -8.87394 -7.85478 -5.23810 1.46090 1.47689 1.56056 1.58806 1.61387 2.01294 2.09944 2.50259 3.23443 3.32650 3.47394 3.55764 3.70635 3.79256 3.84030 3.89111 4.03700 4.14505 4.27541 4.30079 4.33425 4.36117 4.44588 4.51502 4.53474 4.58894 4.60802 4.69775 4.72880 4.75062 4.80002 4.87386 4.94318 4.98402 4.99645 5.04590 5.07687 5.09642 5.21263 5.23339 5.26691 5.34832 5.38479 5.47985 5.56112 5.62114 5.71336 6.21641 6.47987 6.55641 7.07992 7.10817 7.24573 7.74816 8.41177 9.24491 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.003165 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.972586 B = 8844.205905 C = 9678.811104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.159 3.841 4 H 0.049 0.951 5 C 0.159 3.841 6 H 0.071 0.929 7 N -0.703 5.703 8 C 0.527 3.473 9 O -0.572 6.572 10 C -0.090 4.090 11 C -0.133 4.133 12 C -0.104 4.104 13 C 0.099 3.901 14 N -0.621 5.621 15 C 0.515 3.485 16 C -0.163 4.163 17 O -0.596 6.596 18 C 0.116 3.884 19 C -0.137 4.137 20 C 0.180 3.820 21 N -0.613 5.613 22 C -0.233 4.233 23 H 0.081 0.919 24 C -0.062 4.062 25 N -0.949 5.949 26 Si 0.975 3.025 27 H -0.289 1.289 28 H -0.295 1.295 29 H -0.267 1.267 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.409 0.591 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.075 0.925 50 H -0.010 1.010 51 H 0.049 0.951 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.500 10.149 -6.629 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.052 3.948 4 H 0.067 0.933 5 C 0.053 3.947 6 H 0.089 0.911 7 N -0.354 5.354 8 C 0.314 3.686 9 O -0.451 6.451 10 C -0.094 4.094 11 C -0.190 4.190 12 C -0.142 4.142 13 C -0.023 4.023 14 N -0.355 5.355 15 C 0.306 3.694 16 C -0.222 4.222 17 O -0.478 6.478 18 C -0.007 4.007 19 C -0.177 4.177 20 C 0.055 3.945 21 N -0.337 5.337 22 C -0.362 4.362 23 H 0.099 0.901 24 C -0.255 4.255 25 N -0.597 5.597 26 Si 0.803 3.197 27 H -0.217 1.217 28 H -0.221 1.221 29 H -0.192 1.192 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.245 0.755 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.135 0.865 46 H 0.122 0.878 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.008 0.992 51 H 0.067 0.933 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.173 9.542 -6.762 25.957 hybrid contribution 1.380 -0.827 0.904 1.845 sum -21.793 8.716 -5.857 24.191 Atomic orbital electron populations 1.21544 0.94247 1.01432 1.01035 1.21877 0.95763 0.98049 1.00603 1.21277 0.84505 0.94230 0.94788 0.93341 1.21575 0.84407 0.91952 0.96733 0.91061 1.45884 1.26379 1.51628 1.11494 1.20773 0.83946 0.80019 0.83859 1.90666 1.73637 1.55588 1.25229 1.22027 0.91438 0.96503 0.99425 1.21773 1.03932 0.92801 1.00529 1.22671 0.98135 0.98111 0.95303 1.22246 1.01472 0.95463 0.83134 1.48647 1.52517 1.24181 1.10108 1.21214 0.77902 0.79590 0.90663 1.21909 1.02291 1.01000 0.97012 1.90711 1.63016 1.69451 1.24588 1.22406 0.93444 0.93354 0.91513 1.23205 0.95309 0.98668 1.00500 1.21197 0.94217 0.92427 0.86700 1.44767 1.00330 1.68599 1.20047 1.19311 0.89600 1.34691 0.92616 0.90145 1.25659 0.98259 1.02119 0.99483 1.70129 1.09820 1.54188 1.25588 0.85131 0.77800 0.77668 0.79057 1.21661 1.22108 1.19183 0.92788 0.92253 0.94044 0.94471 0.93129 0.75487 0.88181 0.91474 0.91246 0.89653 0.86308 0.92006 0.87837 0.88597 0.89185 0.86538 0.87753 0.91914 0.91443 0.90649 0.99205 0.93311 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 9.57 71.98 0.69 -3.32 16 2 C -0.12 -4.80 5.42 30.59 0.17 -4.64 16 3 C 0.16 6.38 2.95 45.28 0.13 6.51 16 4 H 0.05 1.85 7.70 -2.39 -0.02 1.83 16 5 C 0.16 5.70 1.95 46.18 0.09 5.79 16 6 H 0.07 2.88 7.25 -2.39 -0.02 2.87 16 7 N -0.70 -19.06 4.77 -436.91 -2.08 -21.15 16 8 C 0.53 13.61 6.44 87.66 0.56 14.17 16 9 O -0.57 -19.02 15.27 -3.05 -0.05 -19.07 16 10 C -0.09 -1.45 0.81 -51.46 -0.04 -1.49 16 11 C -0.13 -1.44 8.58 71.98 0.62 -0.82 16 12 C -0.10 -1.30 5.61 31.78 0.18 -1.12 16 13 C 0.10 1.33 6.18 86.73 0.54 1.86 16 14 N -0.62 -11.68 3.31 -811.36 -2.68 -14.37 16 15 C 0.51 11.76 7.96 87.66 0.70 12.46 16 16 C -0.16 -2.27 9.51 71.23 0.68 -1.59 16 17 O -0.60 -19.20 17.34 -3.04 -0.05 -19.25 16 18 C 0.12 2.01 5.84 86.93 0.51 2.52 16 19 C -0.14 -5.33 6.77 31.99 0.22 -5.11 16 20 C 0.18 9.04 5.46 86.86 0.47 9.52 16 21 N -0.61 -31.01 3.14 -667.53 -2.10 -33.11 16 22 C -0.23 -12.86 9.80 84.04 0.82 -12.04 16 23 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 24 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 25 N -0.95 -57.02 10.47 21.65 0.23 -56.80 16 26 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 29 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.04 1.36 7.38 -2.39 -0.02 1.34 16 33 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 34 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 35 H 0.41 9.26 7.57 -92.71 -0.70 8.56 16 36 H 0.10 0.56 8.07 -2.39 -0.02 0.54 16 37 H 0.07 0.75 7.37 -2.39 -0.02 0.73 16 38 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.08 1.35 7.41 -2.39 -0.02 1.33 16 40 H 0.12 0.69 8.04 -2.39 -0.02 0.68 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 1.30 8.12 -2.38 -0.02 1.28 16 45 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.10 1.33 7.99 -2.39 -0.02 1.31 16 47 H 0.06 1.38 7.91 -2.39 -0.02 1.36 16 48 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 50 H -0.01 -0.57 8.11 -2.39 -0.02 -0.58 16 51 H 0.05 2.73 6.73 -2.38 -0.02 2.71 16 52 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -76.98 408.58 2.28 -74.70 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.19 Total: 21.60 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 6.79 Total: 19.67 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -6.63 Total: -125.42 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.10 Total: -38.32 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -76.98 2.28 -74.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087787711.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.932 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds