Wall clock time and date at job start Tue Mar 31 2020 19:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46964 * 2 1 4 4 H 1.08996 * 109.99640 * 53.65436 * 3 2 1 5 5 C 1.54336 * 109.99167 * 292.61671 * 3 2 1 6 6 C 1.55156 * 103.01619 * 218.66937 * 5 3 2 7 7 C 1.54907 * 101.58550 * 35.30581 * 6 5 3 8 8 N 1.47019 * 109.87773 * 174.75035 * 3 2 1 9 9 C 1.34780 * 125.64737 * 298.39096 * 8 3 2 10 10 O 1.21347 * 120.00220 * 4.55419 * 9 8 3 11 11 C 1.49453 * 119.99944 * 184.55409 * 9 8 3 12 12 O 1.21354 * 119.99954 * 0.02562 * 11 9 8 13 13 N 1.34772 * 120.00121 * 179.97438 * 11 9 8 14 14 C 1.46497 * 120.00305 * 180.02562 * 13 11 9 15 15 H 1.09010 * 110.64081 * 328.14437 * 14 13 11 16 16 C 1.55151 * 110.72346 * 91.47831 * 14 13 11 17 17 C 1.54907 * 101.58467 * 153.86788 * 16 14 13 18 18 N 1.47423 * 104.83246 * 322.99108 * 17 16 14 19 19 C 1.36939 * 125.65467 * 204.17326 * 18 17 16 20 20 H 1.07994 * 120.00248 * 165.20408 * 19 18 17 21 21 C 1.38814 * 119.99652 * 345.20571 * 19 18 17 22 22 N 1.31629 * 119.99839 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00022 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47387 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47304 * 120.00092 * 23 21 19 26 26 H 1.48500 * 109.47242 * 239.99901 * 23 21 19 27 27 C 1.47021 * 108.70216 * 24.12701 * 18 17 16 28 28 H 1.09004 * 109.88706 * 239.52211 * 27 18 17 29 29 C 1.53003 * 109.88369 * 118.35895 * 27 18 17 30 30 C 1.52996 * 109.47309 * 177.87819 * 29 27 18 31 31 H 1.08997 * 109.47496 * 63.91616 * 1 2 3 32 32 H 1.08995 * 109.47246 * 183.91899 * 1 2 3 33 33 H 1.09004 * 109.47036 * 303.92038 * 1 2 3 34 34 H 1.08997 * 109.46680 * 240.00478 * 2 1 3 35 35 H 1.09001 * 109.47309 * 120.00124 * 2 1 3 36 36 H 1.08991 * 110.85185 * 100.19954 * 5 3 2 37 37 H 1.08999 * 110.66799 * 337.04960 * 5 3 2 38 38 H 1.09004 * 111.00252 * 277.23003 * 6 5 3 39 39 H 1.09001 * 111.03429 * 153.39985 * 6 5 3 40 40 H 1.09002 * 110.36475 * 204.15331 * 7 6 5 41 41 H 1.08997 * 110.46140 * 81.87709 * 7 6 5 42 42 H 0.97000 * 119.99929 * 0.02562 * 13 11 9 43 43 H 1.09007 * 111.00974 * 271.94240 * 16 14 13 44 44 H 1.09003 * 111.00312 * 35.75270 * 16 14 13 45 45 H 1.09005 * 110.36926 * 81.83137 * 17 16 14 46 46 H 1.09004 * 110.36923 * 204.04705 * 17 16 14 47 47 H 0.97002 * 119.99332 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.46766 * 297.87865 * 29 27 18 49 49 H 1.08993 * 109.47208 * 57.87122 * 29 27 18 50 50 H 1.09000 * 109.47421 * 300.89925 * 30 29 27 51 51 H 1.08996 * 109.47337 * 60.90065 * 30 29 27 52 52 H 1.09001 * 109.47252 * 180.90329 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5919 1.9963 0.8250 5 6 1.6900 2.1259 -1.3388 6 6 2.9488 2.9841 -1.6327 7 6 4.0781 2.0795 -1.0795 8 7 3.5047 1.4550 0.1265 9 6 4.2071 0.9705 1.1698 10 8 3.6345 0.3968 2.0728 11 6 5.6914 1.1397 1.2144 12 8 6.2640 1.7138 0.3115 13 7 6.3938 0.6557 2.2578 14 6 7.8486 0.8221 2.3019 15 1 8.2670 0.8136 1.2953 16 6 8.2295 2.1281 3.0478 17 6 9.6468 1.7856 3.5708 18 7 9.5784 0.3602 3.9405 19 6 10.3868 -0.2684 4.8496 20 1 10.1162 -1.2420 5.2306 21 6 11.5543 0.3460 5.2815 22 7 11.8839 1.5329 4.8175 23 14 12.6568 -0.5110 6.5222 24 1 12.0662 -1.8242 6.8853 25 1 14.0018 -0.7199 5.9281 26 1 12.7789 0.3300 7.7400 27 6 8.4976 -0.2748 3.1722 28 1 7.7566 -0.6951 3.8523 29 6 9.0718 -1.3761 2.2787 30 6 7.9337 -2.0654 1.5235 31 1 -0.3634 0.4518 -0.9230 32 1 -0.3633 -1.0252 0.0702 33 1 -0.3633 0.5735 0.8528 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.8085 2.7580 -1.2329 37 1 1.5383 1.3830 -2.1219 38 1 2.9094 3.9321 -1.0961 39 1 3.0690 3.1484 -2.7035 40 1 4.9504 2.6786 -0.8183 41 1 4.3476 1.3167 -1.8100 42 1 5.9360 0.1972 2.9797 43 1 8.2601 2.9750 2.3622 44 1 7.5438 2.3209 3.8730 45 1 10.3880 1.9390 2.7864 46 1 9.8868 2.3942 4.4427 47 1 12.6999 1.9620 5.1191 48 1 9.7688 -0.9378 1.5643 49 1 9.5949 -2.1076 2.8944 50 1 7.2283 -2.4899 2.2379 51 1 7.4208 -1.3370 0.8955 52 1 8.3411 -2.8605 0.8991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087788433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:08 Heat of formation + Delta-G solvation = -67.663429 kcal Electronic energy + Delta-G solvation = -30750.509194 eV Core-core repulsion = 26749.642970 eV Total energy + Delta-G solvation = -4000.866225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.01498 -40.58004 -39.22935 -38.67691 -35.77447 -34.49748 -34.27559 -33.51590 -32.57697 -30.92706 -28.86410 -28.40154 -26.93429 -25.95186 -24.29710 -23.51385 -22.91879 -22.19340 -21.73631 -21.41225 -20.37653 -18.80970 -18.62976 -18.25062 -17.40610 -17.08001 -16.73938 -16.32295 -15.82297 -15.75572 -15.52470 -15.47717 -14.95578 -14.83692 -14.67766 -14.38581 -14.33607 -14.00813 -13.81126 -13.58878 -13.41376 -13.26056 -12.99030 -12.91726 -12.79435 -12.73571 -12.62622 -12.60070 -12.25924 -12.12485 -12.06854 -11.97406 -11.94986 -11.90812 -11.60592 -11.57767 -11.41445 -11.39679 -10.70250 -10.52521 -10.19360 -9.81026 -8.84043 -7.86689 -5.24494 0.31717 1.18697 1.47174 1.47598 1.57815 2.09666 2.38448 2.52338 3.21872 3.34079 3.58189 3.62132 3.69493 3.77445 3.84616 3.87312 4.14009 4.19393 4.23367 4.32535 4.35442 4.37536 4.49109 4.55128 4.57907 4.59894 4.69502 4.74054 4.78263 4.91807 4.94469 4.98041 5.00716 5.07541 5.11564 5.14733 5.15650 5.16738 5.23860 5.27142 5.35864 5.40351 5.46440 5.47883 5.54145 5.60438 5.71145 6.02398 6.22403 6.22939 6.64176 6.91411 7.08696 7.75175 8.42013 9.24833 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.002501 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.383558 B =11193.628080 C =11611.147032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.127 3.873 4 H 0.073 0.927 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.084 3.916 8 N -0.586 5.586 9 C 0.520 3.480 10 O -0.542 6.542 11 C 0.510 3.490 12 O -0.534 6.534 13 N -0.675 5.675 14 C 0.155 3.845 15 H 0.094 0.906 16 C -0.142 4.142 17 C 0.182 3.818 18 N -0.612 5.612 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.061 4.061 22 N -0.948 5.948 23 Si 0.974 3.026 24 H -0.265 1.265 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.157 3.843 28 H 0.046 0.954 29 C -0.124 4.124 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.415 0.585 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.001 0.999 46 H 0.041 0.959 47 H 0.248 0.752 48 H 0.043 0.957 49 H 0.051 0.949 50 H 0.059 0.941 51 H 0.047 0.953 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.507 0.317 -15.163 27.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.025 3.975 4 H 0.091 0.909 5 C -0.155 4.155 6 C -0.165 4.165 7 C -0.037 4.037 8 N -0.319 5.319 9 C 0.303 3.697 10 O -0.420 6.420 11 C 0.291 3.709 12 O -0.411 6.411 13 N -0.327 5.327 14 C 0.050 3.950 15 H 0.112 0.888 16 C -0.181 4.181 17 C 0.057 3.943 18 N -0.337 5.337 19 C -0.361 4.361 20 H 0.098 0.902 21 C -0.254 4.254 22 N -0.596 5.596 23 Si 0.803 3.197 24 H -0.190 1.190 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.050 3.950 28 H 0.063 0.937 29 C -0.163 4.163 30 C -0.193 4.193 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.253 0.747 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.019 0.981 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.078 0.922 51 H 0.066 0.934 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.175 0.425 -15.146 27.688 hybrid contribution 1.218 -0.473 1.348 1.877 sum -21.957 -0.048 -13.798 25.932 Atomic orbital electron populations 1.21679 0.93139 1.02346 1.02780 1.21871 0.97857 0.95501 1.02033 1.22047 0.77766 0.97428 1.00239 0.90852 1.22769 0.98965 0.99425 0.94329 1.22847 0.92824 0.97730 1.03136 1.22880 0.98531 0.97075 0.85251 1.48517 1.08400 1.56715 1.18231 1.19716 0.87539 0.80094 0.82388 1.90735 1.71390 1.42108 1.37766 1.20161 0.88192 0.79828 0.82742 1.90687 1.71452 1.41655 1.37297 1.45725 1.07461 1.56419 1.23073 1.21871 0.78267 0.95194 0.99702 0.88840 1.23267 0.98136 0.97072 0.99656 1.21146 0.91144 0.85309 0.96710 1.44663 1.37645 1.05626 1.45787 1.19311 0.99738 1.01692 1.15332 0.90218 1.25692 0.98860 0.98119 1.02778 1.70134 1.25482 1.16107 1.47878 0.85073 0.78491 0.78132 0.78017 1.18968 1.22068 1.22030 1.21246 0.90470 0.91832 0.91480 0.93671 1.21876 0.98244 0.98013 0.98198 1.21663 0.97797 0.99993 0.99855 0.90579 0.92313 0.92716 0.91522 0.93241 0.87718 0.88937 0.90424 0.87293 0.89288 0.90584 0.74735 0.90538 0.91153 0.98131 0.94017 0.94308 0.93848 0.93057 0.92234 0.93394 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.70 71.98 0.70 -0.91 16 2 C -0.13 -2.21 5.41 30.60 0.17 -2.04 16 3 C 0.13 2.06 2.92 45.35 0.13 2.19 16 4 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.12 -1.03 5.70 31.79 0.18 -0.85 16 6 C -0.13 -1.30 7.09 31.99 0.23 -1.07 16 7 C 0.08 1.49 6.23 86.86 0.54 2.03 16 8 N -0.59 -12.66 3.06 -789.60 -2.42 -15.08 16 9 C 0.52 14.29 7.73 87.27 0.67 14.96 16 10 O -0.54 -16.77 15.28 -3.24 -0.05 -16.82 16 11 C 0.51 15.11 7.86 87.27 0.69 15.80 16 12 O -0.53 -17.17 13.35 -3.26 -0.04 -17.21 16 13 N -0.68 -20.30 4.73 -438.24 -2.07 -22.37 16 14 C 0.15 5.46 1.96 46.18 0.09 5.55 16 15 H 0.09 3.47 7.16 -2.38 -0.02 3.45 16 16 C -0.14 -5.46 6.77 31.98 0.22 -5.25 16 17 C 0.18 9.00 5.41 86.85 0.47 9.47 16 18 N -0.61 -30.65 3.13 -668.24 -2.09 -32.74 16 19 C -0.23 -12.68 9.77 84.03 0.82 -11.86 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.06 -3.43 5.47 84.86 0.46 -2.97 16 22 N -0.95 -56.56 10.58 21.65 0.23 -56.33 16 23 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 C 0.16 6.21 2.95 45.34 0.13 6.34 16 28 H 0.05 1.75 7.72 -2.38 -0.02 1.73 16 29 C -0.12 -4.55 5.40 30.59 0.17 -4.39 16 30 C -0.14 -3.88 9.65 71.98 0.69 -3.18 16 31 H 0.08 0.56 7.61 -2.39 -0.02 0.54 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 1.04 8.02 -2.39 -0.02 1.02 16 35 H 0.05 1.13 6.56 -2.39 -0.02 1.12 16 36 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.09 0.62 7.77 -2.39 -0.02 0.60 16 38 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 39 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.09 1.97 5.88 -2.39 -0.01 1.96 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.42 11.81 7.84 -92.71 -0.73 11.08 16 43 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 44 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.00 0.04 8.06 -2.38 -0.02 0.02 16 46 H 0.04 2.31 6.94 -2.39 -0.02 2.29 16 47 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16 48 H 0.04 1.71 8.09 -2.38 -0.02 1.69 16 49 H 0.05 2.02 7.93 -2.39 -0.02 2.01 16 50 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.05 1.37 7.04 -2.39 -0.02 1.35 16 52 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -67.42 403.33 2.12 -65.31 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.17 Total: 23.86 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 6.36 Total: 23.84 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -6.35 Total: -126.52 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.09 Total: -34.03 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -67.42 2.12 -65.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087788433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.357 kcal (2) G-P(sol) polarization free energy of solvation -67.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds