Wall clock time and date at job start Tue Mar 31 2020 19:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46837 * 2 1 4 4 H 1.09000 * 109.87489 * 55.75721 * 3 2 1 5 5 C 1.54321 * 109.88159 * 294.73624 * 3 2 1 6 6 H 1.08998 * 110.72373 * 336.77736 * 5 3 2 7 7 N 1.46503 * 110.71848 * 99.87449 * 5 3 2 8 8 C 1.34772 * 119.99957 * 202.28309 * 7 5 3 9 9 O 1.21350 * 120.00169 * 0.27653 * 8 7 5 10 10 C 1.49459 * 119.99858 * 180.27523 * 8 7 5 11 11 O 1.21350 * 119.99973 * 0.02562 * 10 8 7 12 12 N 1.34772 * 119.99858 * 180.02562 * 10 8 7 13 13 C 1.47426 * 125.64830 * 353.67756 * 12 10 8 14 14 C 1.55137 * 104.72128 * 155.81805 * 13 12 10 15 15 C 1.55157 * 101.48527 * 37.29680 * 14 13 12 16 16 C 1.47028 * 125.64689 * 173.98727 * 12 10 8 17 17 H 1.08999 * 109.88097 * 300.44063 * 16 12 10 18 18 C 1.53001 * 109.87957 * 61.45164 * 16 12 10 19 19 C 1.52998 * 109.46882 * 185.21982 * 18 16 12 20 20 C 1.55156 * 103.10500 * 218.32456 * 5 3 2 21 21 C 1.55127 * 101.48324 * 35.28544 * 20 5 3 22 22 N 1.47030 * 110.00996 * 176.85517 * 3 2 1 23 23 C 1.36940 * 125.64824 * 298.39645 * 22 3 2 24 24 H 1.08004 * 119.99537 * 344.97876 * 23 22 3 25 25 C 1.38806 * 120.00055 * 164.97949 * 23 22 3 26 26 N 1.31622 * 119.99958 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00043 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46789 * 59.99955 * 27 25 23 29 29 H 1.48492 * 109.47292 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47038 * 300.00196 * 27 25 23 31 31 H 1.08997 * 109.46690 * 185.68750 * 1 2 3 32 32 H 1.08993 * 109.47092 * 305.68782 * 1 2 3 33 33 H 1.09000 * 109.46511 * 65.68887 * 1 2 3 34 34 H 1.09002 * 109.47393 * 240.00154 * 2 1 3 35 35 H 1.08996 * 109.47260 * 119.99647 * 2 1 3 36 36 H 0.96997 * 119.99926 * 22.55847 * 7 5 3 37 37 H 1.08997 * 110.37039 * 274.74531 * 13 12 10 38 38 H 1.09001 * 110.36720 * 37.07308 * 13 12 10 39 39 H 1.08997 * 111.19185 * 279.19401 * 14 13 12 40 40 H 1.08998 * 110.94072 * 155.29151 * 14 13 12 41 41 H 1.08996 * 110.72260 * 205.97046 * 15 14 13 42 42 H 1.08997 * 110.72279 * 82.69712 * 15 14 13 43 43 H 1.09000 * 109.47183 * 305.21590 * 18 16 12 44 44 H 1.09001 * 109.47477 * 65.22424 * 18 16 12 45 45 H 1.08999 * 109.47104 * 304.08940 * 19 18 16 46 46 H 1.08999 * 109.47324 * 64.08910 * 19 18 16 47 47 H 1.08996 * 109.47615 * 184.09004 * 19 18 16 48 48 H 1.08997 * 111.01046 * 153.48742 * 20 5 3 49 49 H 1.09001 * 111.00700 * 277.34804 * 20 5 3 50 50 H 1.09003 * 110.42016 * 204.29261 * 21 20 5 51 51 H 1.09001 * 110.30267 * 82.08917 * 21 20 5 52 52 H 0.96997 * 119.99578 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6196 1.9842 0.8474 5 6 1.6423 2.1397 -1.3181 6 1 1.4679 1.4061 -2.1051 7 7 0.4580 2.9798 -1.1233 8 6 -0.3142 3.3106 -2.1771 9 8 -0.0313 2.9086 -3.2866 10 6 -1.5190 4.1727 -1.9793 11 8 -1.8017 4.5750 -0.8699 12 7 -2.2915 4.5031 -3.0331 13 6 -1.9960 4.1969 -4.4446 14 6 -3.3796 4.1983 -5.1463 15 6 -4.0989 5.3585 -4.4087 16 6 -3.5653 5.2343 -2.9659 17 1 -4.2779 4.6820 -2.3533 18 6 -3.3361 6.6251 -2.3709 19 6 -4.6821 7.3282 -2.1845 20 6 2.8848 3.0099 -1.6445 21 6 4.0379 2.1040 -1.1385 22 7 3.5082 1.4571 0.0758 23 6 4.2593 0.9539 1.1043 24 1 3.7928 0.7216 2.0503 25 6 5.6202 0.7423 0.9310 26 7 6.1886 1.0249 -0.2220 27 14 6.6449 0.0564 2.3343 28 1 6.1212 -1.2774 2.7236 29 1 8.0581 -0.0744 1.8973 30 1 6.5701 0.9765 3.4975 31 1 -0.3632 -1.0226 0.1018 32 1 -0.3633 0.5995 0.8346 33 1 -0.3632 0.4231 -0.9366 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.2318 3.3011 -0.2365 37 1 -1.3505 4.9641 -4.8722 38 1 -1.5288 3.2159 -4.5302 39 1 -3.9011 3.2539 -4.9911 40 1 -3.2770 4.4154 -6.2095 41 1 -5.1797 5.2198 -4.4333 42 1 -3.8226 6.3203 -4.8407 43 1 -2.8392 6.5299 -1.4055 44 1 -2.7109 7.2104 -3.0453 45 1 -5.2111 7.3587 -3.1371 46 1 -5.2794 6.7819 -1.4546 47 1 -4.5149 8.3449 -1.8292 48 1 2.9662 3.1883 -2.7167 49 1 2.8585 3.9505 -1.0943 50 1 4.9150 2.7042 -0.8967 51 1 4.2874 1.3544 -1.8895 52 1 7.1396 0.8774 -0.3429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087788434.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:12 Heat of formation + Delta-G solvation = -49.376162 kcal Electronic energy + Delta-G solvation = -30733.218840 eV Core-core repulsion = 26733.145611 eV Total energy + Delta-G solvation = -4000.073229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92568 -39.35420 -37.86788 -37.53645 -34.23765 -33.66731 -32.77665 -31.83261 -31.68056 -29.09510 -28.16919 -26.92481 -25.56123 -24.39166 -23.26742 -22.44508 -21.89339 -20.91372 -20.25569 -20.12517 -19.16171 -17.52275 -17.24537 -16.82633 -16.35481 -15.66278 -15.43365 -14.94773 -14.78099 -14.37152 -14.16684 -14.01238 -13.88448 -13.71964 -13.57251 -13.35781 -13.28950 -12.71997 -12.67206 -12.39386 -12.06923 -11.96289 -11.92949 -11.79760 -11.68284 -11.52118 -11.22550 -11.15794 -11.02642 -10.89610 -10.84985 -10.70524 -10.63879 -10.47554 -10.25923 -10.11193 -9.79041 -9.67139 -9.36440 -8.94178 -8.73746 -8.59450 -6.82389 -5.76952 -3.13486 1.48071 2.26940 3.26872 3.39062 3.43562 3.44605 3.50524 4.19636 4.25485 4.45650 4.47994 4.54514 4.82751 4.88144 4.98049 5.08563 5.17788 5.20427 5.33826 5.36298 5.41701 5.44912 5.52507 5.56041 5.62153 5.70814 5.73312 5.74888 5.75978 5.82421 5.83784 5.85903 5.96768 6.04353 6.16257 6.20096 6.23818 6.38855 6.43398 6.51114 6.61941 6.66618 6.91640 7.02144 7.11640 7.38223 7.47913 7.59002 7.76764 7.77083 8.12284 8.25092 9.16534 9.77255 10.44868 11.35190 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023263 B = 0.002468 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.363141 B =11342.525705 C =11429.235537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.038 0.962 5 C 0.135 3.865 6 H 0.098 0.902 7 N -0.680 5.680 8 C 0.508 3.492 9 O -0.522 6.522 10 C 0.522 3.478 11 O -0.520 6.520 12 N -0.591 5.591 13 C 0.090 3.910 14 C -0.136 4.136 15 C -0.128 4.128 16 C 0.136 3.864 17 H 0.078 0.922 18 C -0.139 4.139 19 C -0.147 4.147 20 C -0.157 4.157 21 C 0.175 3.825 22 N -0.593 5.593 23 C -0.229 4.229 24 H 0.075 0.925 25 C -0.002 4.002 26 N -0.917 5.917 27 Si 0.911 3.089 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.410 0.590 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.074 0.926 51 H 0.029 0.971 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.235 8.797 -9.192 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.052 3.948 4 H 0.055 0.945 5 C 0.031 3.969 6 H 0.115 0.885 7 N -0.331 5.331 8 C 0.288 3.712 9 O -0.399 6.399 10 C 0.305 3.695 11 O -0.396 6.396 12 N -0.325 5.325 13 C -0.032 4.032 14 C -0.174 4.174 15 C -0.166 4.166 16 C 0.033 3.967 17 H 0.097 0.903 18 C -0.177 4.177 19 C -0.205 4.205 20 C -0.196 4.196 21 C 0.050 3.950 22 N -0.318 5.318 23 C -0.357 4.357 24 H 0.093 0.907 25 C -0.200 4.200 26 N -0.563 5.563 27 Si 0.741 3.259 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.092 0.908 51 H 0.047 0.953 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.852 8.633 -9.270 24.398 hybrid contribution 0.488 -0.241 1.086 1.215 sum -20.364 8.391 -8.184 23.496 Atomic orbital electron populations 1.21778 0.97245 1.00591 1.00911 1.22012 0.93534 0.99015 1.02538 1.21085 0.87234 0.93430 0.93009 0.94491 1.22287 0.82863 0.92401 0.99309 0.88450 1.45925 1.26322 1.50238 1.10603 1.19892 0.83938 0.81910 0.85500 1.90673 1.71480 1.54125 1.23575 1.20015 0.84128 0.81471 0.83856 1.90739 1.71597 1.53564 1.23693 1.48338 1.22130 1.54758 1.07292 1.22818 0.96995 1.04183 0.79188 1.22887 0.95567 0.99026 0.99966 1.22750 1.00632 0.99606 0.93588 1.21763 0.84750 0.92808 0.97367 0.90349 1.21940 0.98456 0.94576 1.02741 1.21712 0.96737 1.00387 1.01655 1.23485 0.96503 0.99153 1.00498 1.21463 0.92948 0.92879 0.87714 1.44416 0.98259 1.68356 1.20728 1.18894 0.90003 1.36153 0.90660 0.90723 1.24914 0.97247 1.00824 0.96969 1.69913 1.10780 1.52815 1.22788 0.86224 0.79353 0.79078 0.81243 1.21057 1.21603 1.21104 0.93573 0.93291 0.93565 0.92297 0.91538 0.75423 0.91075 0.87194 0.90482 0.89634 0.89934 0.90234 0.90045 0.91820 0.92611 0.92581 0.92455 0.91663 0.91868 0.90781 0.95258 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.57 37.16 0.36 -1.87 16 2 C -0.13 -2.43 5.42 -26.73 -0.14 -2.58 16 3 C 0.16 3.19 2.93 -66.95 -0.20 2.99 16 4 H 0.04 0.73 7.70 -51.93 -0.40 0.33 16 5 C 0.14 2.41 1.97 -66.10 -0.13 2.28 16 6 H 0.10 1.82 7.27 -51.93 -0.38 1.44 16 7 N -0.68 -10.51 4.91 -52.46 -0.26 -10.76 16 8 C 0.51 7.73 7.85 -11.58 -0.09 7.64 16 9 O -0.52 -8.60 13.39 5.50 0.07 -8.52 16 10 C 0.52 7.37 7.73 -11.58 -0.09 7.28 16 11 O -0.52 -8.15 15.22 5.50 0.08 -8.06 16 12 N -0.59 -6.79 3.06 -163.37 -0.50 -7.29 16 13 C 0.09 0.88 6.30 -2.40 -0.02 0.87 16 14 C -0.14 -0.91 7.10 -24.46 -0.17 -1.08 16 15 C -0.13 -0.80 5.56 -24.89 -0.14 -0.93 16 16 C 0.14 1.24 2.92 -66.95 -0.20 1.04 16 17 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 18 C -0.14 -1.27 5.41 -26.73 -0.14 -1.42 16 19 C -0.15 -1.02 9.82 37.16 0.36 -0.65 16 20 C -0.16 -3.01 6.79 -24.46 -0.17 -3.18 16 21 C 0.18 4.16 5.41 -2.41 -0.01 4.15 16 22 N -0.59 -14.53 3.13 -162.43 -0.51 -15.03 16 23 C -0.23 -6.16 9.75 -15.06 -0.15 -6.31 16 24 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 25 C 0.00 -0.07 5.47 -17.43 -0.10 -0.16 16 26 N -0.92 -26.37 10.59 55.49 0.59 -25.78 16 27 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.69 7.41 -51.93 -0.38 0.31 16 34 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 35 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 36 H 0.41 6.02 7.81 -40.82 -0.32 5.70 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.11 1.27 5.81 -51.93 -0.30 0.97 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.45 7.77 -51.93 -0.40 0.04 16 43 H 0.08 0.96 6.51 -51.93 -0.34 0.63 16 44 H 0.06 0.57 8.02 -51.93 -0.42 0.16 16 45 H 0.05 0.31 7.37 -51.93 -0.38 -0.07 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.07 1.96 6.96 -51.93 -0.36 1.59 16 51 H 0.03 0.75 8.05 -51.93 -0.42 0.34 16 52 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 403.54 15.07 6.08 6.08 Total: -1.00 -30.16 403.54 -9.61 -39.77 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -9.13 Total: 4.81 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.02 Total: 8.07 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.68 Total: -58.87 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.16 Total: -16.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.16 -9.61 -39.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087788434.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.602 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds