Wall clock time and date at job start Tue Mar 31 2020 20:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46746 * 2 1 4 4 H 1.08995 * 109.99846 * 305.35378 * 3 2 1 5 5 C 1.54321 * 109.88023 * 184.26342 * 3 2 1 6 6 H 1.09004 * 110.87254 * 336.82609 * 5 3 2 7 7 N 1.46496 * 110.72361 * 100.02410 * 5 3 2 8 8 C 1.34779 * 120.00748 * 199.97592 * 7 5 3 9 9 O 1.21282 * 119.99656 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00698 * 179.97438 * 8 7 5 11 11 H 1.09003 * 109.63267 * 92.73334 * 10 8 7 12 12 C 1.53059 * 109.63759 * 213.13437 * 10 8 7 13 13 C 1.51793 * 110.74284 * 34.78466 * 12 10 8 14 14 C 1.51785 * 113.80936 * 66.80829 * 13 12 10 15 15 C 1.52981 * 110.88344 * 292.99704 * 14 13 12 16 16 N 1.47195 * 108.66375 * 86.46659 * 15 14 13 17 17 C 1.46499 * 119.78605 * 108.04074 * 16 15 14 18 18 C 1.33372 * 120.42587 * 288.03601 * 16 15 14 19 19 O 1.21283 * 119.88704 * 180.28231 * 18 16 15 20 20 C 1.55152 * 102.94652 * 218.38982 * 5 3 2 21 21 C 1.54919 * 101.57900 * 35.49875 * 20 5 3 22 22 N 1.47017 * 109.88290 * 66.45541 * 3 2 1 23 23 C 1.36938 * 125.64837 * 298.39020 * 22 3 2 24 24 H 1.07997 * 119.99854 * 341.31851 * 23 22 3 25 25 C 1.38810 * 119.99611 * 161.32584 * 23 22 3 26 26 N 1.31613 * 120.00360 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99760 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46985 * 59.99535 * 27 25 23 29 29 H 1.48500 * 109.47261 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47147 * 299.99989 * 27 25 23 31 31 H 1.09003 * 109.46817 * 172.67007 * 1 2 3 32 32 H 1.09001 * 109.46672 * 292.66315 * 1 2 3 33 33 H 1.08995 * 109.47316 * 52.66921 * 1 2 3 34 34 H 1.09003 * 109.46709 * 240.00268 * 2 1 3 35 35 H 1.08999 * 109.47013 * 120.00128 * 2 1 3 36 36 H 0.97005 * 120.00216 * 19.97895 * 7 5 3 37 37 H 1.08996 * 109.22396 * 155.11512 * 12 10 8 38 38 H 1.09000 * 109.21935 * 274.46219 * 12 10 8 39 39 H 1.08995 * 108.61801 * 187.92890 * 13 12 10 40 40 H 1.08999 * 108.61506 * 305.82973 * 13 12 10 41 41 H 1.09001 * 109.19133 * 53.35924 * 14 13 12 42 42 H 1.08996 * 109.19196 * 172.63385 * 14 13 12 43 43 H 1.09002 * 109.60723 * 206.22296 * 15 14 13 44 44 H 1.09001 * 109.60388 * 326.54840 * 15 14 13 45 45 H 1.09007 * 109.47141 * 90.00259 * 17 16 15 46 46 H 1.08996 * 109.47251 * 209.99949 * 17 16 15 47 47 H 1.09002 * 109.47349 * 330.00364 * 17 16 15 48 48 H 1.09001 * 111.00366 * 277.43249 * 20 5 3 49 49 H 1.08999 * 111.04094 * 153.58799 * 20 5 3 50 50 H 1.09003 * 110.36256 * 81.83210 * 21 20 5 51 51 H 1.09002 * 110.36488 * 204.15368 * 21 20 5 52 52 H 0.97009 * 119.99731 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9914 -0.8354 5 6 3.5793 1.4549 -0.1079 6 1 4.0007 0.5121 0.2410 7 7 4.0004 1.7310 -1.4836 8 6 5.2423 1.3985 -1.8880 9 8 6.0113 0.8702 -1.1130 10 6 5.6752 1.6819 -3.3034 11 1 6.1656 2.6543 -3.3486 12 6 6.6450 0.5945 -3.7721 13 6 6.2705 -0.7518 -3.1795 14 6 4.9483 -1.2981 -3.6868 15 6 3.7809 -0.4340 -3.2062 16 7 3.5894 0.6713 -4.1593 17 6 2.4271 0.6700 -5.0512 18 6 4.4670 1.6739 -4.2161 19 8 4.2969 2.5823 -5.0016 20 6 3.9844 2.6192 0.8342 21 6 2.9270 2.4913 1.9591 22 7 1.6859 2.0980 1.2674 23 6 0.4140 2.3077 1.7294 24 1 -0.4220 2.2669 1.0468 25 6 0.1992 2.5729 3.0749 26 7 1.2180 2.6223 3.9067 27 14 -1.5359 2.8584 3.7052 28 1 -2.3632 1.6539 3.4404 29 1 -1.4951 3.1188 5.1666 30 1 -2.1290 4.0288 3.0097 31 1 -0.3633 -1.0193 -0.1311 32 1 -0.3633 0.3960 0.9484 33 1 -0.3634 0.6232 -0.8171 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.3853 2.1531 -2.1037 37 1 6.6128 0.5295 -4.8597 38 1 7.6558 0.8559 -3.4588 39 1 7.0570 -1.4678 -3.4177 40 1 6.2100 -0.6504 -2.0960 41 1 4.9601 -1.3104 -4.7766 42 1 4.8162 -2.3156 -3.3190 43 1 2.8744 -1.0374 -3.1589 44 1 4.0053 -0.0330 -2.2178 45 1 1.5969 1.1842 -4.5669 46 1 2.6805 1.1829 -5.9789 47 1 2.1391 -0.3580 -5.2712 48 1 3.9002 3.5801 0.3264 49 1 4.9911 2.4736 1.2259 50 1 3.2235 1.7226 2.6728 51 1 2.7930 3.4478 2.4643 52 1 1.0678 2.8081 4.8469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087794269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:21 Heat of formation + Delta-G solvation = -29.120216 kcal Electronic energy + Delta-G solvation = -32610.542904 eV Core-core repulsion = 28611.348039 eV Total energy + Delta-G solvation = -3999.194865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72963 -39.25286 -37.97842 -36.52854 -34.90421 -34.12136 -32.56372 -32.10131 -31.44130 -29.08047 -28.31530 -26.86391 -25.92799 -24.64863 -24.05807 -22.21765 -21.53030 -20.51082 -20.25509 -19.74480 -19.05498 -17.89723 -16.99049 -16.93705 -16.20012 -15.86511 -15.46917 -15.23024 -14.77960 -14.29810 -14.21353 -14.20080 -13.92673 -13.79073 -13.41840 -13.19922 -12.97271 -12.80857 -12.69897 -12.56473 -12.28772 -12.10849 -12.05692 -11.91763 -11.53676 -11.12374 -11.05322 -11.02788 -10.91730 -10.87192 -10.70814 -10.68133 -10.35567 -10.21316 -10.13488 -10.03331 -9.88703 -9.52130 -9.46999 -8.94334 -8.64331 -8.56426 -6.81121 -5.81119 -3.17266 2.34274 2.47891 2.76161 3.12475 3.35713 3.41118 3.41819 4.08259 4.41034 4.45872 4.56189 4.60762 4.85091 4.88083 5.03099 5.14831 5.16909 5.27836 5.33130 5.36366 5.39627 5.43893 5.51982 5.54370 5.62758 5.68705 5.72232 5.76016 5.88130 5.92670 5.95299 5.96250 6.07695 6.16660 6.20586 6.31188 6.40767 6.42437 6.50085 6.59155 6.64993 6.75833 7.06488 7.10176 7.21159 7.42803 7.48140 7.59888 7.73246 7.88804 8.14426 8.22771 9.12852 9.73990 10.43719 11.31525 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.003628 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.763314 B = 7715.845114 C = 8229.404044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.161 3.839 4 H 0.033 0.967 5 C 0.133 3.867 6 H 0.095 0.905 7 N -0.716 5.716 8 C 0.528 3.472 9 O -0.523 6.523 10 C -0.129 4.129 11 H 0.134 0.866 12 C -0.089 4.089 13 C -0.156 4.156 14 C -0.136 4.136 15 C 0.074 3.926 16 N -0.602 5.602 17 C 0.081 3.919 18 C 0.517 3.483 19 O -0.541 6.541 20 C -0.156 4.156 21 C 0.176 3.824 22 N -0.589 5.589 23 C -0.228 4.228 24 H 0.078 0.922 25 C 0.000 4.000 26 N -0.912 5.912 27 Si 0.905 3.095 28 H -0.283 1.283 29 H -0.290 1.290 30 H -0.284 1.284 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.032 0.968 51 H 0.066 0.934 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 -7.358 -15.933 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.053 3.947 4 H 0.051 0.949 5 C 0.029 3.971 6 H 0.113 0.887 7 N -0.368 5.368 8 C 0.314 3.686 9 O -0.401 6.401 10 C -0.153 4.153 11 H 0.152 0.848 12 C -0.127 4.127 13 C -0.193 4.193 14 C -0.174 4.174 15 C -0.049 4.049 16 N -0.335 5.335 17 C -0.062 4.062 18 C 0.304 3.696 19 O -0.418 6.418 20 C -0.195 4.195 21 C 0.051 3.949 22 N -0.314 5.314 23 C -0.357 4.357 24 H 0.095 0.905 25 C -0.197 4.197 26 N -0.558 5.558 27 Si 0.735 3.265 28 H -0.210 1.210 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.050 0.950 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.050 0.950 51 H 0.084 0.916 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.602 -7.202 -15.547 18.745 hybrid contribution -1.254 0.273 0.023 1.283 sum 6.348 -6.929 -15.525 18.147 Atomic orbital electron populations 1.21942 0.95912 0.99142 1.03967 1.21936 0.96838 0.97828 0.99739 1.21078 0.89785 0.92375 0.91512 0.94947 1.22185 0.95817 0.99576 0.79555 0.88695 1.46497 1.14128 1.61706 1.14470 1.19853 0.81951 0.78130 0.88632 1.90640 1.52205 1.42172 1.55051 1.21993 0.96430 1.04659 0.92230 0.84836 1.21032 0.98231 0.93016 1.00422 1.21655 0.96814 0.95781 1.05053 1.21760 0.94811 0.99523 1.01329 1.22654 0.99670 0.88197 0.94366 1.47719 1.24696 1.22871 1.38194 1.21741 0.87431 1.02415 0.94566 1.20107 0.83584 0.81722 0.84177 1.90738 1.75818 1.35845 1.39426 1.23414 1.00276 0.97108 0.98741 1.21380 0.82736 1.00147 0.90676 1.44351 1.02452 1.65939 1.18707 1.18877 0.83032 1.42484 0.91272 0.90485 1.24964 0.97210 1.01701 0.95859 1.69911 1.28588 1.53888 1.03386 0.86318 0.84134 0.78128 0.77903 1.20964 1.21589 1.21088 0.95023 0.89165 0.94258 0.94397 0.92161 0.76596 0.91189 0.89834 0.91622 0.87728 0.91704 0.90512 0.89283 0.87578 0.92093 0.90468 0.91064 0.92060 0.91710 0.94953 0.91587 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.95 37.16 0.33 -2.34 16 2 C -0.12 -2.12 5.46 -26.73 -0.15 -2.27 16 3 C 0.16 2.99 2.99 -66.96 -0.20 2.79 16 4 H 0.03 0.62 7.68 -51.93 -0.40 0.22 16 5 C 0.13 2.21 2.55 -66.10 -0.17 2.04 16 6 H 0.10 1.65 7.41 -51.93 -0.38 1.27 16 7 N -0.72 -9.96 3.31 -52.04 -0.17 -10.13 16 8 C 0.53 7.09 4.20 -10.99 -0.05 7.04 16 9 O -0.52 -8.24 13.69 5.56 0.08 -8.16 16 10 C -0.13 -1.48 3.10 -92.54 -0.29 -1.77 16 11 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 12 C -0.09 -0.87 5.24 -27.31 -0.14 -1.01 16 13 C -0.16 -1.52 5.16 -27.96 -0.14 -1.67 16 14 C -0.14 -1.18 5.73 -27.36 -0.16 -1.34 16 15 C 0.07 0.72 5.56 -3.67 -0.02 0.70 16 16 N -0.60 -6.31 2.49 -181.11 -0.45 -6.76 16 17 C 0.08 0.72 10.35 59.85 0.62 1.34 16 18 C 0.52 6.43 5.14 -11.25 -0.06 6.37 16 19 O -0.54 -8.37 16.60 5.55 0.09 -8.28 16 20 C -0.16 -2.91 6.77 -24.58 -0.17 -3.07 16 21 C 0.18 4.05 5.36 -2.52 -0.01 4.04 16 22 N -0.59 -13.71 3.12 -162.58 -0.51 -14.22 16 23 C -0.23 -5.83 7.78 -15.06 -0.12 -5.94 16 24 H 0.08 1.91 6.62 -52.49 -0.35 1.56 16 25 C 0.00 0.01 5.46 -17.43 -0.10 -0.08 16 26 N -0.91 -25.58 10.75 55.49 0.60 -24.99 16 27 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.88 5.34 -51.93 -0.28 1.60 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.40 5.40 6.80 -40.82 -0.28 5.12 16 37 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 1.28 4.71 -51.93 -0.24 1.04 16 41 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.76 7.92 -51.93 -0.41 0.35 16 44 H 0.11 1.24 3.26 -51.93 -0.17 1.08 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.75 7.38 -51.93 -0.38 0.37 16 47 H 0.07 0.48 8.03 -51.93 -0.42 0.06 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.03 0.82 7.96 -51.93 -0.41 0.40 16 51 H 0.07 1.70 7.23 -51.93 -0.38 1.33 16 52 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -29.67 384.78 -9.11 -38.79 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.71 Total: 7.04 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.81 Total: 4.84 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.54 Total: -56.10 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.17 Total: -16.44 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.67 -9.11 -38.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087794269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.666 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds