Wall clock time and date at job start Tue Mar 31 2020 20:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 H 1.09007 * 109.87210 * 55.83093 * 3 2 1 5 5 C 1.54322 * 109.88249 * 294.81419 * 3 2 1 6 6 H 1.08991 * 110.72266 * 336.59769 * 5 3 2 7 7 N 1.46504 * 110.87191 * 99.79856 * 5 3 2 8 8 C 1.34775 * 120.00133 * 200.06363 * 7 5 3 9 9 O 1.21272 * 120.00003 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99766 * 180.02562 * 8 7 5 11 11 H 1.08998 * 109.63215 * 299.99945 * 10 8 7 12 12 C 1.53061 * 109.63210 * 179.60139 * 10 8 7 13 13 C 1.51788 * 110.74580 * 155.37926 * 12 10 8 14 14 C 1.51782 * 113.80863 * 66.81132 * 13 12 10 15 15 C 1.52992 * 110.88130 * 292.99724 * 14 13 12 16 16 N 1.47193 * 108.66468 * 86.46610 * 15 14 13 17 17 C 1.46499 * 119.78439 * 108.03731 * 16 15 14 18 18 C 1.33285 * 120.40485 * 287.79672 * 16 15 14 19 19 O 1.21287 * 119.83278 * 180.46682 * 18 16 15 20 20 C 1.55162 * 102.94240 * 218.23099 * 5 3 2 21 21 C 1.54912 * 101.61463 * 35.48756 * 20 5 3 22 22 N 1.47021 * 110.01440 * 176.92730 * 3 2 1 23 23 C 1.36940 * 125.65116 * 298.40019 * 22 3 2 24 24 H 1.08005 * 119.99621 * 345.36004 * 23 22 3 25 25 C 1.38811 * 120.00202 * 165.37065 * 23 22 3 26 26 N 1.31613 * 120.00117 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99663 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47559 * 89.99497 * 27 25 23 29 29 H 1.48503 * 109.46821 * 209.99516 * 27 25 23 30 30 H 1.48500 * 109.47295 * 329.99018 * 27 25 23 31 31 H 1.08992 * 109.47125 * 305.56071 * 1 2 3 32 32 H 1.09005 * 109.46911 * 65.56669 * 1 2 3 33 33 H 1.09008 * 109.47139 * 185.56164 * 1 2 3 34 34 H 1.09008 * 109.47284 * 239.99777 * 2 1 3 35 35 H 1.08998 * 109.47197 * 120.00586 * 2 1 3 36 36 H 0.97001 * 119.99939 * 20.06534 * 7 5 3 37 37 H 1.09000 * 109.22612 * 275.71074 * 12 10 8 38 38 H 1.09002 * 109.22195 * 35.05776 * 12 10 8 39 39 H 1.08996 * 108.61992 * 187.92867 * 13 12 10 40 40 H 1.08995 * 108.62086 * 305.69559 * 13 12 10 41 41 H 1.08998 * 109.19821 * 53.35710 * 14 13 12 42 42 H 1.09004 * 109.19943 * 172.63580 * 14 13 12 43 43 H 1.09002 * 109.60223 * 206.21754 * 15 14 13 44 44 H 1.09000 * 109.60560 * 326.71141 * 15 14 13 45 45 H 1.09003 * 109.46808 * 90.00107 * 17 16 15 46 46 H 1.08998 * 109.47296 * 210.00024 * 17 16 15 47 47 H 1.09000 * 109.47721 * 330.00223 * 17 16 15 48 48 H 1.08999 * 110.99766 * 153.57637 * 20 5 3 49 49 H 1.09000 * 111.00644 * 277.39217 * 20 5 3 50 50 H 1.08998 * 110.37019 * 81.84483 * 21 20 5 51 51 H 1.09005 * 110.36303 * 204.17066 * 21 20 5 52 52 H 0.97001 * 119.99967 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6207 1.9837 0.8482 5 6 1.6407 2.1403 -1.3172 6 1 1.4683 1.4072 -2.1051 7 7 0.4557 2.9799 -1.1247 8 6 -0.2899 3.3467 -2.1858 9 8 0.0198 2.9813 -3.3000 10 6 -1.5085 4.2109 -1.9878 11 1 -2.2166 3.7013 -1.3343 12 6 -2.1666 4.4898 -3.3413 13 6 -3.6412 4.8051 -3.1673 14 6 -3.9069 6.1087 -2.4367 15 6 -3.4549 6.0181 -0.9779 16 7 -2.0275 6.3699 -0.9043 17 6 -1.6226 7.6485 -0.3150 18 6 -1.1011 5.5302 -1.3662 19 8 0.0726 5.8269 -1.2927 20 6 2.8839 3.0109 -1.6399 21 6 4.0371 2.1052 -1.1404 22 7 3.5082 1.4570 0.0740 23 6 4.2606 0.9532 1.1014 24 1 3.7941 0.7147 2.0458 25 6 5.6228 0.7494 0.9290 26 7 6.1912 1.0398 -0.2220 27 14 6.6492 0.0629 2.3307 28 1 6.6692 -1.4197 2.2497 29 1 8.0365 0.5829 2.2292 30 1 6.0579 0.4799 3.6275 31 1 -0.3633 0.5976 0.8359 32 1 -0.3633 0.4251 -0.9357 33 1 -0.3634 -1.0229 0.0996 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.2078 3.2719 -0.2336 37 1 -1.6714 5.3384 -3.8131 38 1 -2.0601 3.6127 -3.9796 39 1 -4.1044 4.8579 -4.1526 40 1 -4.1074 3.9927 -2.6101 41 1 -3.3634 6.9139 -2.9309 42 1 -4.9746 6.3260 -2.4681 43 1 -4.0347 6.7139 -0.3714 44 1 -3.6003 5.0016 -0.6123 45 1 -1.4599 7.5201 0.7551 46 1 -0.6996 7.9889 -0.7845 47 1 -2.4068 8.3880 -0.4771 48 1 2.9659 3.1926 -2.7115 49 1 2.8572 3.9501 -1.0873 50 1 4.2845 1.3563 -1.8927 51 1 4.9141 2.7061 -0.8993 52 1 7.1431 0.8970 -0.3426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087794270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:24 Heat of formation + Delta-G solvation = -52.971891 kcal Electronic energy + Delta-G solvation = -31403.999645 eV Core-core repulsion = 27403.770494 eV Total energy + Delta-G solvation = -4000.229152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.06991 -39.25136 -37.63125 -36.99835 -34.79483 -33.90941 -32.69765 -31.82954 -31.34026 -29.07307 -28.60332 -26.76345 -25.92721 -24.51879 -23.96435 -22.24756 -21.09390 -20.71950 -20.06436 -19.77746 -18.76114 -17.75409 -17.26261 -16.76974 -16.17181 -15.76680 -15.55325 -14.82207 -14.64693 -14.57893 -14.11330 -14.02445 -13.89555 -13.74186 -13.63588 -13.18591 -13.13243 -12.94269 -12.67154 -12.59627 -12.27150 -11.95540 -11.86398 -11.83169 -11.56186 -11.38672 -11.14932 -11.07348 -11.01001 -10.83442 -10.79630 -10.52576 -10.37831 -10.16871 -10.01471 -9.91370 -9.68250 -9.59099 -9.51801 -9.01880 -8.56048 -8.44528 -6.73658 -5.69217 -3.05486 2.40743 2.48029 3.00832 3.38306 3.42818 3.47809 3.49427 4.16028 4.28834 4.34677 4.49048 4.54760 4.68386 4.87381 4.95118 4.96862 5.03673 5.14593 5.23876 5.30274 5.38303 5.41370 5.51083 5.55618 5.60746 5.61852 5.63814 5.68669 5.79003 5.89182 5.90256 5.94550 6.01450 6.11135 6.12321 6.33770 6.41936 6.46972 6.54643 6.68261 6.81467 6.85735 7.01248 7.02681 7.23132 7.60765 7.69179 7.82895 7.86711 7.94297 8.32897 8.48548 9.24089 9.85288 10.54123 11.42691 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002921 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.960409 B = 9583.590855 C = 9964.331790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.033 0.967 5 C 0.140 3.860 6 H 0.091 0.909 7 N -0.700 5.700 8 C 0.536 3.464 9 O -0.538 6.538 10 C -0.129 4.129 11 H 0.116 0.884 12 C -0.098 4.098 13 C -0.122 4.122 14 C -0.142 4.142 15 C 0.107 3.893 16 N -0.612 5.612 17 C 0.083 3.917 18 C 0.520 3.480 19 O -0.521 6.521 20 C -0.153 4.153 21 C 0.175 3.825 22 N -0.594 5.594 23 C -0.227 4.227 24 H 0.074 0.926 25 C -0.004 4.004 26 N -0.915 5.915 27 Si 0.910 3.090 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.027 0.973 51 H 0.072 0.928 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.953 10.617 -2.236 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.051 0.949 5 C 0.036 3.964 6 H 0.109 0.891 7 N -0.348 5.348 8 C 0.320 3.680 9 O -0.415 6.415 10 C -0.153 4.153 11 H 0.134 0.866 12 C -0.137 4.137 13 C -0.160 4.160 14 C -0.181 4.181 15 C -0.015 4.015 16 N -0.346 5.346 17 C -0.059 4.059 18 C 0.306 3.694 19 O -0.396 6.396 20 C -0.193 4.193 21 C 0.049 3.951 22 N -0.318 5.318 23 C -0.356 4.356 24 H 0.092 0.908 25 C -0.201 4.201 26 N -0.562 5.562 27 Si 0.740 3.260 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.045 0.955 51 H 0.091 0.909 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.819 10.472 -2.949 26.186 hybrid contribution 0.336 -0.211 1.222 1.285 sum -23.483 10.261 -1.727 25.685 Atomic orbital electron populations 1.21769 0.97378 1.00422 1.00830 1.22017 0.93499 0.99258 1.02397 1.21045 0.87134 0.93177 0.93250 0.94949 1.22073 0.83594 0.92254 0.98477 0.89121 1.45900 1.27805 1.51819 1.09319 1.19591 0.83400 0.80021 0.84998 1.90682 1.70948 1.56042 1.23796 1.21762 0.98554 0.94309 1.00680 0.86611 1.21139 0.94329 1.04142 0.94046 1.21194 0.96032 0.97333 1.01399 1.21845 1.01898 0.98854 0.95456 1.21907 0.80417 1.02026 0.97176 1.47683 1.06876 1.19266 1.60824 1.21695 1.01729 0.84102 0.98409 1.19996 0.85748 0.85605 0.78019 1.90837 1.17319 1.75783 1.55658 1.23387 0.96372 0.99143 1.00393 1.21441 0.93221 0.92843 0.87551 1.44445 0.98360 1.68232 1.20776 1.18933 0.89911 1.35866 0.90845 0.90805 1.24906 0.97208 1.01015 0.96947 1.69940 1.10560 1.52804 1.22878 0.86162 0.79720 0.78807 0.81311 1.21566 1.21715 1.20687 0.93541 0.93330 0.93690 0.92333 0.91748 0.77121 0.91247 0.88712 0.91106 0.91595 0.91085 0.90422 0.89400 0.90370 0.92464 0.90307 0.91249 0.92055 0.91749 0.95503 0.90932 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.58 37.16 0.36 -1.81 16 2 C -0.13 -2.51 5.42 -26.74 -0.14 -2.66 16 3 C 0.16 3.38 2.93 -66.96 -0.20 3.18 16 4 H 0.03 0.67 7.70 -51.92 -0.40 0.27 16 5 C 0.14 2.73 1.93 -66.09 -0.13 2.60 16 6 H 0.09 1.87 7.34 -51.93 -0.38 1.48 16 7 N -0.70 -11.34 4.53 -52.03 -0.24 -11.57 16 8 C 0.54 8.47 6.56 -10.99 -0.07 8.40 16 9 O -0.54 -10.30 15.22 5.56 0.08 -10.22 16 10 C -0.13 -1.44 2.22 -92.54 -0.21 -1.64 16 11 H 0.12 0.94 6.79 -51.93 -0.35 0.59 16 12 C -0.10 -0.97 4.80 -27.31 -0.13 -1.10 16 13 C -0.12 -0.73 5.27 -27.96 -0.15 -0.88 16 14 C -0.14 -0.69 5.74 -27.35 -0.16 -0.85 16 15 C 0.11 0.54 5.88 -3.67 -0.02 0.52 16 16 N -0.61 -5.31 2.85 -181.13 -0.52 -5.83 16 17 C 0.08 0.64 10.34 59.85 0.62 1.26 16 18 C 0.52 6.41 6.52 -11.29 -0.07 6.33 16 19 O -0.52 -8.82 15.35 5.55 0.09 -8.74 16 20 C -0.15 -3.35 6.76 -24.58 -0.17 -3.51 16 21 C 0.17 4.47 5.41 -2.50 -0.01 4.45 16 22 N -0.59 -15.28 3.13 -162.53 -0.51 -15.79 16 23 C -0.23 -6.33 9.76 -15.06 -0.15 -6.47 16 24 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 25 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 26 N -0.92 -27.28 10.58 55.49 0.59 -26.70 16 27 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.71 7.40 -51.93 -0.38 0.33 16 33 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.06 1.19 8.07 -51.92 -0.42 0.77 16 35 H 0.06 1.30 7.91 -51.93 -0.41 0.89 16 36 H 0.40 5.78 8.23 -40.82 -0.34 5.45 16 37 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.09 1.06 7.13 -51.93 -0.37 0.69 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.33 7.88 -51.93 -0.41 -0.08 16 41 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.09 0.27 7.92 -51.93 -0.41 -0.14 16 44 H 0.08 0.34 6.72 -51.93 -0.35 -0.01 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.77 7.39 -51.93 -0.38 0.39 16 47 H 0.07 0.34 8.03 -51.93 -0.42 -0.08 16 48 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 50 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 51 H 0.07 2.05 6.94 -51.93 -0.36 1.69 16 52 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -34.74 399.66 -9.36 -44.10 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -9.13 Total: 3.84 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.72 Total: 7.62 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.67 Total: -59.89 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.17 Total: -18.96 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.74 -9.36 -44.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087794270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.869 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds