Wall clock time and date at job start Tue Mar 31 2020 20:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 H 1.09007 * 109.87210 * 55.83093 * 3 2 1 5 5 C 1.54322 * 109.88249 * 294.81419 * 3 2 1 6 6 H 1.08991 * 110.72266 * 336.59769 * 5 3 2 7 7 N 1.46504 * 110.87191 * 99.79856 * 5 3 2 8 8 C 1.34775 * 120.00133 * 200.06363 * 7 5 3 9 9 O 1.21272 * 120.00003 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99766 * 180.02562 * 8 7 5 11 11 H 1.08998 * 109.63215 * 299.99945 * 10 8 7 12 12 C 1.53061 * 109.63210 * 179.60139 * 10 8 7 13 13 C 1.51788 * 110.74580 * 155.37926 * 12 10 8 14 14 C 1.51782 * 113.80863 * 66.81132 * 13 12 10 15 15 C 1.52992 * 110.88130 * 292.99724 * 14 13 12 16 16 N 1.47193 * 108.66468 * 86.46610 * 15 14 13 17 17 C 1.46499 * 119.78439 * 108.03731 * 16 15 14 18 18 C 1.33285 * 120.40485 * 287.79672 * 16 15 14 19 19 O 1.21287 * 119.83278 * 180.46682 * 18 16 15 20 20 C 1.55162 * 102.94240 * 218.23099 * 5 3 2 21 21 C 1.54912 * 101.61463 * 35.48756 * 20 5 3 22 22 N 1.47021 * 110.01440 * 176.92730 * 3 2 1 23 23 C 1.36940 * 125.65116 * 298.40019 * 22 3 2 24 24 H 1.08005 * 119.99621 * 345.36004 * 23 22 3 25 25 C 1.38811 * 120.00202 * 165.37065 * 23 22 3 26 26 N 1.31613 * 120.00117 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99663 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47559 * 89.99497 * 27 25 23 29 29 H 1.48503 * 109.46821 * 209.99516 * 27 25 23 30 30 H 1.48500 * 109.47295 * 329.99018 * 27 25 23 31 31 H 1.08992 * 109.47125 * 305.56071 * 1 2 3 32 32 H 1.09005 * 109.46911 * 65.56669 * 1 2 3 33 33 H 1.09008 * 109.47139 * 185.56164 * 1 2 3 34 34 H 1.09008 * 109.47284 * 239.99777 * 2 1 3 35 35 H 1.08998 * 109.47197 * 120.00586 * 2 1 3 36 36 H 0.97001 * 119.99939 * 20.06534 * 7 5 3 37 37 H 1.09000 * 109.22612 * 275.71074 * 12 10 8 38 38 H 1.09002 * 109.22195 * 35.05776 * 12 10 8 39 39 H 1.08996 * 108.61992 * 187.92867 * 13 12 10 40 40 H 1.08995 * 108.62086 * 305.69559 * 13 12 10 41 41 H 1.08998 * 109.19821 * 53.35710 * 14 13 12 42 42 H 1.09004 * 109.19943 * 172.63580 * 14 13 12 43 43 H 1.09002 * 109.60223 * 206.21754 * 15 14 13 44 44 H 1.09000 * 109.60560 * 326.71141 * 15 14 13 45 45 H 1.09003 * 109.46808 * 90.00107 * 17 16 15 46 46 H 1.08998 * 109.47296 * 210.00024 * 17 16 15 47 47 H 1.09000 * 109.47721 * 330.00223 * 17 16 15 48 48 H 1.08999 * 110.99766 * 153.57637 * 20 5 3 49 49 H 1.09000 * 111.00644 * 277.39217 * 20 5 3 50 50 H 1.08998 * 110.37019 * 81.84483 * 21 20 5 51 51 H 1.09005 * 110.36303 * 204.17066 * 21 20 5 52 52 H 0.97001 * 119.99967 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6207 1.9837 0.8482 5 6 1.6407 2.1403 -1.3172 6 1 1.4683 1.4072 -2.1051 7 7 0.4557 2.9799 -1.1247 8 6 -0.2899 3.3467 -2.1858 9 8 0.0198 2.9813 -3.3000 10 6 -1.5085 4.2109 -1.9878 11 1 -2.2166 3.7013 -1.3343 12 6 -2.1666 4.4898 -3.3413 13 6 -3.6412 4.8051 -3.1673 14 6 -3.9069 6.1087 -2.4367 15 6 -3.4549 6.0181 -0.9779 16 7 -2.0275 6.3699 -0.9043 17 6 -1.6226 7.6485 -0.3150 18 6 -1.1011 5.5302 -1.3662 19 8 0.0726 5.8269 -1.2927 20 6 2.8839 3.0109 -1.6399 21 6 4.0371 2.1052 -1.1404 22 7 3.5082 1.4570 0.0740 23 6 4.2606 0.9532 1.1014 24 1 3.7941 0.7147 2.0458 25 6 5.6228 0.7494 0.9290 26 7 6.1912 1.0398 -0.2220 27 14 6.6492 0.0629 2.3307 28 1 6.6692 -1.4197 2.2497 29 1 8.0365 0.5829 2.2292 30 1 6.0579 0.4799 3.6275 31 1 -0.3633 0.5976 0.8359 32 1 -0.3633 0.4251 -0.9357 33 1 -0.3634 -1.0229 0.0996 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.2078 3.2719 -0.2336 37 1 -1.6714 5.3384 -3.8131 38 1 -2.0601 3.6127 -3.9796 39 1 -4.1044 4.8579 -4.1526 40 1 -4.1074 3.9927 -2.6101 41 1 -3.3634 6.9139 -2.9309 42 1 -4.9746 6.3260 -2.4681 43 1 -4.0347 6.7139 -0.3714 44 1 -3.6003 5.0016 -0.6123 45 1 -1.4599 7.5201 0.7551 46 1 -0.6996 7.9889 -0.7845 47 1 -2.4068 8.3880 -0.4771 48 1 2.9659 3.1926 -2.7115 49 1 2.8572 3.9501 -1.0873 50 1 4.2845 1.3563 -1.8927 51 1 4.9141 2.7061 -0.8993 52 1 7.1431 0.8970 -0.3426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087794270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:23 Heat of formation + Delta-G solvation = -76.410749 kcal Electronic energy + Delta-G solvation = -31405.016031 eV Core-core repulsion = 27403.770494 eV Total energy + Delta-G solvation = -4001.245537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03870 -40.59057 -39.23500 -37.77538 -35.68240 -35.50643 -34.28480 -33.53193 -32.32230 -30.82594 -29.39687 -28.20639 -26.99049 -26.16510 -24.89139 -23.70024 -22.43137 -21.76072 -21.54059 -21.26147 -19.83992 -18.79407 -18.50599 -18.29262 -17.54018 -16.86458 -16.67437 -16.41189 -15.85689 -15.76691 -15.47999 -15.37169 -15.04458 -14.80332 -14.63401 -14.45922 -14.31748 -13.98300 -13.79467 -13.58879 -13.54871 -13.31826 -13.23540 -12.97517 -12.86996 -12.73463 -12.60728 -12.53365 -12.23369 -12.06372 -11.99585 -11.96490 -11.89158 -11.65202 -11.59380 -11.50901 -11.37889 -10.94747 -10.86674 -10.68918 -9.98606 -9.71728 -8.85113 -7.86198 -5.25137 1.40422 1.45703 1.48055 1.52620 1.56564 2.05361 2.17882 2.50735 3.32852 3.36826 3.47121 3.61829 3.72543 3.82033 3.88875 3.91292 4.10890 4.17104 4.21567 4.32954 4.36549 4.39790 4.42225 4.49584 4.59169 4.62920 4.64865 4.71608 4.72662 4.80546 4.86204 4.95328 4.98734 5.05649 5.07891 5.15255 5.20199 5.23843 5.28520 5.32293 5.44924 5.46619 5.48404 5.53741 5.54690 5.65069 5.67430 6.21240 6.29055 6.52204 7.06589 7.08241 7.20433 7.74490 8.43021 9.25520 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002921 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.960409 B = 9583.590855 C = 9964.331790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.161 3.839 4 H 0.046 0.954 5 C 0.160 3.840 6 H 0.081 0.919 7 N -0.693 5.693 8 C 0.531 3.469 9 O -0.576 6.576 10 C -0.117 4.117 11 H 0.158 0.842 12 C -0.094 4.094 13 C -0.118 4.118 14 C -0.138 4.138 15 C 0.098 3.902 16 N -0.602 5.602 17 C 0.080 3.920 18 C 0.515 3.485 19 O -0.581 6.581 20 C -0.140 4.140 21 C 0.186 3.814 22 N -0.613 5.613 23 C -0.234 4.234 24 H 0.084 0.916 25 C -0.064 4.064 26 N -0.951 5.951 27 Si 0.979 3.021 28 H -0.285 1.285 29 H -0.297 1.297 30 H -0.266 1.266 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.406 0.594 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.058 0.942 50 H -0.003 1.003 51 H 0.037 0.963 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.473 10.932 -0.357 31.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.054 3.946 4 H 0.064 0.936 5 C 0.054 3.946 6 H 0.099 0.901 7 N -0.342 5.342 8 C 0.318 3.682 9 O -0.455 6.455 10 C -0.141 4.141 11 H 0.175 0.825 12 C -0.133 4.133 13 C -0.155 4.155 14 C -0.176 4.176 15 C -0.023 4.023 16 N -0.334 5.334 17 C -0.062 4.062 18 C 0.302 3.698 19 O -0.461 6.461 20 C -0.180 4.180 21 C 0.060 3.940 22 N -0.338 5.338 23 C -0.363 4.363 24 H 0.101 0.899 25 C -0.258 4.258 26 N -0.599 5.599 27 Si 0.807 3.193 28 H -0.212 1.212 29 H -0.224 1.224 30 H -0.190 1.190 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.242 0.758 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.015 0.985 51 H 0.056 0.944 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -28.458 10.811 -1.035 30.460 hybrid contribution 1.674 -0.235 0.600 1.794 sum -26.783 10.576 -0.435 28.799 Atomic orbital electron populations 1.21657 0.93465 1.02176 1.01827 1.21890 0.96840 0.97036 1.00728 1.21222 0.84439 0.94809 0.94137 0.93645 1.21625 0.83909 0.91663 0.97405 0.90134 1.45728 1.26691 1.51429 1.10313 1.20427 0.84254 0.79548 0.84007 1.90668 1.72200 1.57414 1.25232 1.21756 0.96756 0.93327 1.02291 0.82476 1.21132 0.96968 1.02456 0.92718 1.21189 0.92767 0.98866 1.02661 1.21829 1.03492 0.97450 0.94818 1.22322 0.78010 1.03992 0.97956 1.47818 1.08088 1.18626 1.58832 1.21805 1.01775 0.84402 0.98259 1.20162 0.85478 0.86211 0.77928 1.90818 1.19815 1.77044 1.58421 1.23171 0.96505 0.98433 0.99872 1.21092 0.93447 0.92137 0.87293 1.44684 1.00611 1.68303 1.20184 1.19328 0.90427 1.34866 0.91708 0.89869 1.25771 0.98564 1.01947 0.99484 1.70160 1.10314 1.54369 1.25043 0.85079 0.77500 0.77872 0.78875 1.21202 1.22361 1.19042 0.91515 0.93064 0.91816 0.94440 0.93028 0.75814 0.93653 0.90318 0.90316 0.89364 0.92726 0.87425 0.86384 0.88635 0.91907 0.93235 0.87761 0.92309 0.92275 0.98470 0.94427 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.58 71.98 0.69 -2.90 16 2 C -0.13 -4.70 5.42 30.59 0.17 -4.53 16 3 C 0.16 6.70 2.93 45.34 0.13 6.83 16 4 H 0.05 1.81 7.70 -2.38 -0.02 1.79 16 5 C 0.16 6.31 1.93 46.18 0.09 6.40 16 6 H 0.08 3.39 7.34 -2.39 -0.02 3.38 16 7 N -0.69 -21.99 4.53 -436.93 -1.98 -23.97 16 8 C 0.53 16.53 6.56 87.66 0.58 17.11 16 9 O -0.58 -22.44 15.22 -3.00 -0.05 -22.48 16 10 C -0.12 -2.40 2.22 -12.04 -0.03 -2.43 16 11 H 0.16 1.86 6.79 -2.39 -0.02 1.85 16 12 C -0.09 -1.72 4.80 30.22 0.15 -1.58 16 13 C -0.12 -0.98 5.27 29.80 0.16 -0.83 16 14 C -0.14 -0.75 5.74 30.19 0.17 -0.58 16 15 C 0.10 0.51 5.88 86.24 0.51 1.02 16 16 N -0.60 -8.84 2.85 -846.19 -2.41 -11.25 16 17 C 0.08 1.07 10.34 127.77 1.32 2.39 16 18 C 0.52 12.08 6.52 88.12 0.57 12.65 16 19 O -0.58 -20.04 15.35 -3.05 -0.05 -20.09 16 20 C -0.14 -6.42 6.76 31.99 0.22 -6.20 16 21 C 0.19 10.12 5.41 86.85 0.47 10.59 16 22 N -0.61 -32.55 3.13 -668.13 -2.09 -34.64 16 23 C -0.23 -13.28 9.76 84.03 0.82 -12.46 16 24 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 25 C -0.06 -3.75 5.47 84.86 0.46 -3.29 16 26 N -0.95 -59.28 10.58 21.65 0.23 -59.05 16 27 Si 0.98 46.64 29.55 68.60 2.03 48.66 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 30 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.36 7.40 -2.38 -0.02 1.34 16 33 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.04 1.54 8.07 -2.38 -0.02 1.52 16 35 H 0.05 2.05 7.91 -2.39 -0.02 2.03 16 36 H 0.41 11.24 8.23 -92.71 -0.76 10.48 16 37 H 0.04 1.03 7.87 -2.39 -0.02 1.01 16 38 H 0.08 1.71 7.13 -2.39 -0.02 1.69 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.09 0.41 7.88 -2.39 -0.02 0.39 16 41 H 0.05 0.52 8.05 -2.39 -0.02 0.50 16 42 H 0.11 0.05 8.14 -2.38 -0.02 0.03 16 43 H 0.12 0.01 7.92 -2.39 -0.02 -0.01 16 44 H 0.10 0.25 6.72 -2.39 -0.02 0.23 16 45 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.05 0.98 7.39 -2.39 -0.02 0.96 16 47 H 0.10 0.65 8.03 -2.39 -0.02 0.63 16 48 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 49 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 50 H 0.00 -0.16 8.06 -2.39 -0.02 -0.18 16 51 H 0.04 2.27 6.94 -2.38 -0.02 2.26 16 52 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -82.02 399.66 2.29 -79.73 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.14 Total: 20.89 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 6.47 Total: 22.19 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -6.26 Total: -128.91 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.09 Total: -42.57 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -82.02 2.29 -79.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087794270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.319 kcal (2) G-P(sol) polarization free energy of solvation -82.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds