Wall clock time and date at job start Tue Mar 31 2020 20:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46870 * 2 1 4 4 H 1.09001 * 110.00061 * 54.06996 * 3 2 1 5 5 C 1.54329 * 109.99393 * 293.02760 * 3 2 1 6 6 H 1.09001 * 110.51603 * 336.98056 * 5 3 2 7 7 N 1.46499 * 111.00116 * 100.12753 * 5 3 2 8 8 C 1.34784 * 119.99741 * 200.23711 * 7 5 3 9 9 O 1.21277 * 120.00339 * 359.97438 * 8 7 5 10 10 C 1.50701 * 119.99886 * 180.02562 * 8 7 5 11 11 C 1.52997 * 109.47066 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.60238 * 29.24515 * 11 10 8 13 13 C 1.52985 * 109.60260 * 268.74579 * 11 10 8 14 14 C 1.51750 * 110.88037 * 326.73881 * 13 11 10 15 15 C 1.51789 * 113.79416 * 292.95818 * 14 13 11 16 16 C 1.53059 * 110.74362 * 66.83105 * 15 14 13 17 17 C 1.51419 * 108.49476 * 275.08323 * 16 15 14 18 18 O 1.21279 * 119.88869 * 251.20943 * 17 16 15 19 19 N 1.33369 * 120.21666 * 71.23461 * 17 16 15 20 20 C 1.55155 * 103.02311 * 218.66914 * 5 3 2 21 21 C 1.54906 * 101.58287 * 35.30506 * 20 5 3 22 22 N 1.47031 * 109.88109 * 175.16244 * 3 2 1 23 23 C 1.36938 * 125.64403 * 298.39479 * 22 3 2 24 24 H 1.07994 * 120.00381 * 347.63199 * 23 22 3 25 25 C 1.38811 * 119.99752 * 167.63157 * 23 22 3 26 26 N 1.31625 * 119.99746 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00130 * 179.72453 * 25 23 22 28 28 H 1.48496 * 109.46751 * 359.97438 * 27 25 23 29 29 H 1.48489 * 109.47224 * 120.00370 * 27 25 23 30 30 H 1.48504 * 109.47041 * 240.00398 * 27 25 23 31 31 H 1.09001 * 109.46766 * 295.87045 * 1 2 3 32 32 H 1.09000 * 109.47261 * 55.87372 * 1 2 3 33 33 H 1.08996 * 109.47092 * 175.87661 * 1 2 3 34 34 H 1.08995 * 109.47060 * 240.00389 * 2 1 3 35 35 H 1.09000 * 109.47152 * 119.99745 * 2 1 3 36 36 H 0.96998 * 120.00256 * 20.23679 * 7 5 3 37 37 H 1.09009 * 109.47039 * 300.00366 * 10 8 7 38 38 H 1.09003 * 109.46796 * 59.99659 * 10 8 7 39 39 H 1.09004 * 109.19667 * 87.07914 * 13 11 10 40 40 H 1.09004 * 109.19709 * 206.35131 * 13 11 10 41 41 H 1.09010 * 108.60121 * 171.85615 * 14 13 11 42 42 H 1.08996 * 108.64201 * 54.08708 * 14 13 11 43 43 H 1.08998 * 109.22337 * 306.50326 * 15 14 13 44 44 H 1.09006 * 109.18829 * 187.13667 * 15 14 13 45 45 H 1.09004 * 109.63002 * 155.37816 * 16 15 14 46 46 H 1.08998 * 109.79852 * 34.88626 * 16 15 14 47 47 H 0.97003 * 119.78309 * 180.28558 * 19 17 16 48 48 H 1.08998 * 111.00523 * 277.22952 * 20 5 3 49 49 H 1.09003 * 111.00874 * 153.38253 * 20 5 3 50 50 H 1.08996 * 110.37003 * 204.15358 * 21 20 5 51 51 H 1.08998 * 110.46081 * 81.88009 * 21 20 5 52 52 H 0.96998 * 119.99812 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9944 0.8294 5 6 1.6810 2.1291 -1.3347 6 1 1.5257 1.3860 -2.1169 7 7 0.4963 2.9780 -1.1864 8 6 -0.2178 3.3341 -2.2727 9 8 0.1207 2.9522 -3.3729 10 6 -1.4362 4.2079 -2.1203 11 6 -2.0572 4.4613 -3.4954 12 1 -1.8522 3.6149 -4.1509 13 6 -1.4662 5.7371 -4.0983 14 6 -1.1480 6.7504 -3.0145 15 6 -2.3757 7.3047 -2.3148 16 6 -3.0764 6.2125 -1.5031 17 6 -4.0076 5.4524 -2.4240 18 8 -5.2080 5.5856 -2.3139 19 7 -3.5120 4.6366 -3.3555 20 6 2.9377 2.9880 -1.6352 21 6 4.0707 2.0822 -1.0918 22 7 3.5056 1.4548 0.1166 23 6 4.2264 0.9599 1.1705 24 1 3.7264 0.6976 2.0910 25 6 5.6000 0.7956 1.0557 26 7 6.2095 1.1158 -0.0661 27 14 6.5845 0.1278 2.4959 28 1 5.6717 -0.1461 3.6347 29 1 7.2630 -1.1294 2.0912 30 1 7.6014 1.1290 2.9070 31 1 -0.3633 0.4484 0.9247 32 1 -0.3634 0.5765 -0.8507 33 1 -0.3633 -1.0250 -0.0739 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.2257 3.2838 -0.3066 37 1 -2.1631 3.7091 -1.4791 38 1 -1.1477 5.1584 -1.6714 39 1 -0.5512 5.4888 -4.6361 40 1 -2.1840 6.1702 -4.7949 41 1 -0.5994 7.5788 -3.4631 42 1 -0.5082 6.2757 -2.2706 43 1 -3.0671 7.6971 -3.0604 44 1 -2.0737 8.1108 -1.6461 45 1 -3.6505 6.6675 -0.6959 46 1 -2.3360 5.5299 -1.0862 47 1 -4.1142 4.1559 -3.9448 48 1 2.9019 3.9347 -1.0961 49 1 3.0503 3.1544 -2.7065 50 1 4.9448 2.6806 -0.8351 51 1 4.3353 1.3212 -1.8260 52 1 7.1694 1.0014 -0.1463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087808801.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:17 Heat of formation + Delta-G solvation = -60.899953 kcal Electronic energy + Delta-G solvation = -31012.108499 eV Core-core repulsion = 27011.535561 eV Total energy + Delta-G solvation = -4000.572938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.04527 -40.74822 -39.33221 -38.04093 -35.59179 -34.88648 -34.25562 -33.48308 -32.29687 -31.25695 -30.33134 -28.06256 -26.69791 -26.01838 -24.79114 -23.68619 -22.36830 -21.69828 -21.36345 -20.80333 -20.02502 -18.92087 -18.69387 -17.80791 -17.45042 -17.12819 -16.70812 -16.60037 -15.89186 -15.64943 -15.47497 -15.43071 -15.10527 -14.94792 -14.62035 -14.49110 -14.37903 -14.14421 -13.79576 -13.62268 -13.53951 -13.20258 -12.98855 -12.87319 -12.72173 -12.63431 -12.47936 -12.29863 -12.16577 -11.99625 -11.93747 -11.88145 -11.79137 -11.59069 -11.53689 -11.32823 -11.18943 -10.84900 -10.68254 -10.57702 -10.14471 -9.91218 -8.81955 -7.82703 -5.20257 1.48048 1.49060 1.58659 1.62861 1.72580 2.05062 2.43924 2.54839 3.36287 3.47482 3.58301 3.63796 3.77835 3.87733 3.88972 3.94080 3.96736 4.14980 4.24101 4.25903 4.39624 4.40787 4.45264 4.51313 4.55229 4.64359 4.65451 4.71096 4.80002 4.86219 4.91691 4.94539 5.04357 5.08372 5.13820 5.19105 5.22480 5.26981 5.28653 5.35015 5.45336 5.49491 5.53996 5.61947 5.71951 5.77000 5.85181 6.26350 6.30094 6.65802 7.11838 7.25246 7.34698 7.79889 8.45537 9.27508 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.002578 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.175660 B =10857.718172 C =11224.993156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.158 3.842 4 H 0.055 0.945 5 C 0.158 3.842 6 H 0.074 0.926 7 N -0.702 5.702 8 C 0.518 3.482 9 O -0.576 6.576 10 C -0.178 4.178 11 C 0.154 3.846 12 H 0.106 0.894 13 C -0.131 4.131 14 C -0.134 4.134 15 C -0.107 4.107 16 C -0.168 4.168 17 C 0.516 3.484 18 O -0.606 6.606 19 N -0.710 5.710 20 C -0.138 4.138 21 C 0.178 3.822 22 N -0.614 5.614 23 C -0.228 4.228 24 H 0.083 0.917 25 C -0.064 4.064 26 N -0.950 5.950 27 Si 0.972 3.028 28 H -0.264 1.264 29 H -0.298 1.298 30 H -0.294 1.294 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.414 0.586 37 H 0.119 0.881 38 H 0.154 0.846 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.132 0.868 47 H 0.403 0.597 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.045 0.955 51 H -0.012 1.012 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 10.978 -3.733 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.051 3.949 4 H 0.072 0.928 5 C 0.052 3.948 6 H 0.093 0.907 7 N -0.354 5.354 8 C 0.306 3.694 9 O -0.455 6.455 10 C -0.217 4.217 11 C 0.049 3.951 12 H 0.124 0.876 13 C -0.170 4.170 14 C -0.171 4.171 15 C -0.145 4.145 16 C -0.207 4.207 17 C 0.305 3.695 18 O -0.488 6.488 19 N -0.361 5.361 20 C -0.178 4.178 21 C 0.052 3.948 22 N -0.338 5.338 23 C -0.357 4.357 24 H 0.101 0.899 25 C -0.257 4.257 26 N -0.599 5.599 27 Si 0.801 3.199 28 H -0.188 1.188 29 H -0.225 1.225 30 H -0.221 1.221 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.251 0.749 37 H 0.137 0.863 38 H 0.170 0.830 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.150 0.850 47 H 0.240 0.760 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.063 0.937 51 H 0.006 0.994 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.867 10.843 -4.261 21.329 hybrid contribution 0.854 -0.920 0.407 1.320 sum -17.013 9.922 -3.854 20.068 Atomic orbital electron populations 1.21672 0.93729 1.01768 1.02164 1.21922 0.96603 0.97849 1.00382 1.21258 0.84436 0.94458 0.94737 0.92783 1.21575 0.84375 0.91950 0.96887 0.90743 1.45844 1.27507 1.51411 1.10633 1.20894 0.84604 0.80186 0.83742 1.90704 1.71255 1.56689 1.26893 1.23053 0.95702 1.02699 1.00214 1.21097 0.77979 0.99901 0.96089 0.87621 1.21738 1.01824 0.94542 0.98851 1.21349 0.98132 0.99221 0.98400 1.21212 0.96569 0.97448 0.99298 1.22750 1.00039 0.99816 0.98132 1.21116 0.88617 0.78514 0.81295 1.90730 1.18403 1.66764 1.72912 1.46128 1.08491 1.45545 1.35912 1.23200 0.95457 0.98730 1.00404 1.21195 0.94174 0.92590 0.86826 1.44716 1.00799 1.69317 1.18985 1.19344 0.89821 1.34508 0.91997 0.89934 1.25648 0.98166 1.02371 0.99555 1.70147 1.08455 1.54675 1.26589 0.85098 0.78620 0.77056 0.79111 1.18778 1.22495 1.22083 0.91463 0.92556 0.92685 0.94741 0.93512 0.74852 0.86280 0.82974 0.90537 0.91055 0.90450 0.90114 0.92709 0.88542 0.88247 0.85025 0.76002 0.90581 0.91512 0.93709 0.99358 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.81 71.98 0.71 -2.62 16 2 C -0.13 -4.37 5.43 30.60 0.17 -4.20 16 3 C 0.16 5.63 2.92 45.34 0.13 5.76 16 4 H 0.05 1.76 7.70 -2.39 -0.02 1.75 16 5 C 0.16 4.92 1.95 46.18 0.09 5.01 16 6 H 0.07 2.64 7.32 -2.39 -0.02 2.62 16 7 N -0.70 -14.66 4.66 -436.91 -2.04 -16.70 16 8 C 0.52 10.46 7.82 87.66 0.69 11.14 16 9 O -0.58 -16.42 15.11 -3.02 -0.05 -16.46 16 10 C -0.18 -2.09 3.27 29.85 0.10 -2.00 16 11 C 0.15 2.07 3.12 44.85 0.14 2.21 16 12 H 0.11 1.74 6.91 -2.39 -0.02 1.72 16 13 C -0.13 -1.64 5.56 30.18 0.17 -1.47 16 14 C -0.13 -1.29 5.18 29.79 0.15 -1.13 16 15 C -0.11 -1.01 5.66 30.22 0.17 -0.84 16 16 C -0.17 -1.87 5.50 30.10 0.17 -1.71 16 17 C 0.52 9.40 6.68 88.10 0.59 9.99 16 18 O -0.61 -16.94 17.92 -3.03 -0.05 -16.99 16 19 N -0.71 -10.28 5.09 -442.20 -2.25 -12.53 16 20 C -0.14 -4.92 6.77 31.98 0.22 -4.71 16 21 C 0.18 8.50 5.46 86.85 0.47 8.97 16 22 N -0.61 -29.21 3.13 -668.26 -2.09 -31.30 16 23 C -0.23 -11.99 9.73 84.03 0.82 -11.17 16 24 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 25 C -0.06 -3.53 5.47 84.86 0.46 -3.07 16 26 N -0.95 -55.84 10.48 21.65 0.23 -55.61 16 27 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 28 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 30 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.32 6.89 -2.39 -0.02 1.30 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16 35 H 0.05 1.76 7.85 -2.39 -0.02 1.74 16 36 H 0.41 6.18 8.33 -92.71 -0.77 5.41 16 37 H 0.12 1.09 7.47 -2.38 -0.02 1.07 16 38 H 0.15 1.16 2.72 -2.39 -0.01 1.16 16 39 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.07 0.90 8.05 -2.39 -0.02 0.88 16 41 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.08 0.68 5.56 -2.39 -0.01 0.67 16 43 H 0.05 0.67 7.86 -2.39 -0.02 0.65 16 44 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 45 H 0.10 1.11 8.13 -2.38 -0.02 1.09 16 46 H 0.13 0.89 3.66 -2.39 -0.01 0.89 16 47 H 0.40 5.58 8.91 -92.71 -0.83 4.76 16 48 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.04 2.42 6.74 -2.39 -0.02 2.41 16 51 H -0.01 -0.63 8.11 -2.39 -0.02 -0.65 16 52 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -73.70 390.96 0.36 -73.33 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.65 Total: 19.62 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 5.24 Total: 10.17 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -6.15 Total: -116.14 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.10 Total: -33.45 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -73.70 0.36 -73.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087808801.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.434 kcal (2) G-P(sol) polarization free energy of solvation -73.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds