Wall clock time and date at job start Tue Mar 31 2020 20:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46792 * 2 1 4 4 H 1.08999 * 110.00306 * 307.03915 * 3 2 1 5 5 C 1.54320 * 109.88088 * 185.93929 * 3 2 1 6 6 H 1.08999 * 110.87539 * 336.82712 * 5 3 2 7 7 N 1.46495 * 110.72009 * 100.02620 * 5 3 2 8 8 C 1.34782 * 120.00210 * 199.97372 * 7 5 3 9 9 O 1.21278 * 119.99803 * 0.02562 * 8 7 5 10 10 C 1.50694 * 119.99842 * 180.02562 * 8 7 5 11 11 N 1.46507 * 109.47083 * 180.02562 * 10 8 7 12 12 C 1.47197 * 119.78331 * 269.72465 * 11 10 8 13 13 C 1.53575 * 108.36243 * 108.09341 * 12 11 10 14 14 C 1.51781 * 110.80993 * 86.59671 * 13 12 11 15 15 C 1.51788 * 113.81474 * 292.91170 * 14 13 12 16 16 C 1.53066 * 110.74134 * 66.80637 * 15 14 13 17 17 C 1.33364 * 119.78664 * 89.99628 * 11 10 8 18 18 O 1.21286 * 119.89409 * 0.29246 * 17 11 10 19 19 C 1.55157 * 102.94441 * 218.39160 * 5 3 2 20 20 C 1.54914 * 101.57857 * 35.50404 * 19 5 3 21 21 N 1.47029 * 109.87972 * 68.13568 * 3 2 1 22 22 C 1.36935 * 125.64577 * 298.38623 * 21 3 2 23 23 H 1.07997 * 120.00357 * 334.94528 * 22 21 3 24 24 C 1.38815 * 119.99605 * 154.94005 * 22 21 3 25 25 N 1.31621 * 119.99625 * 159.56201 * 24 22 21 26 26 Si 1.86800 * 120.00174 * 339.56131 * 24 22 21 27 27 H 1.48495 * 109.46846 * 84.87630 * 26 24 22 28 28 H 1.48501 * 109.46758 * 204.87457 * 26 24 22 29 29 H 1.48497 * 109.47127 * 324.87178 * 26 24 22 30 30 H 1.09005 * 109.46724 * 292.17388 * 1 2 3 31 31 H 1.08994 * 109.47299 * 52.17530 * 1 2 3 32 32 H 1.08997 * 109.46860 * 172.17821 * 1 2 3 33 33 H 1.08992 * 109.46904 * 240.00801 * 2 1 3 34 34 H 1.09000 * 109.47222 * 120.00096 * 2 1 3 35 35 H 0.97000 * 119.99815 * 19.98011 * 7 5 3 36 36 H 1.09001 * 109.47348 * 300.00253 * 10 8 7 37 37 H 1.09001 * 109.47790 * 60.00222 * 10 8 7 38 38 H 1.08989 * 109.60376 * 227.79436 * 12 11 10 39 39 H 1.09002 * 109.60596 * 348.29316 * 12 11 10 40 40 H 1.09007 * 109.30078 * 326.21604 * 13 12 11 41 41 H 1.09003 * 109.16328 * 206.89342 * 13 12 11 42 42 H 1.09000 * 108.61259 * 171.79443 * 14 13 12 43 43 H 1.08998 * 108.61087 * 54.03658 * 14 13 12 44 44 H 1.09000 * 109.22513 * 306.48932 * 15 14 13 45 45 H 1.08996 * 109.22491 * 187.13425 * 15 14 13 46 46 H 1.08997 * 109.62908 * 155.38448 * 16 15 14 47 47 H 1.09002 * 109.62998 * 34.78837 * 16 15 14 48 48 H 1.09000 * 111.00678 * 153.57363 * 19 5 3 49 49 H 1.08992 * 111.00517 * 277.39331 * 19 5 3 50 50 H 1.08999 * 110.36868 * 81.83374 * 20 19 5 51 51 H 1.08999 * 110.36380 * 204.04198 * 20 19 5 52 52 H 0.96997 * 119.99946 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5826 1.9997 -0.8176 5 6 3.5758 1.4563 -0.1502 6 1 4.0066 0.5103 0.1777 7 7 3.9587 1.7458 -1.5342 8 6 5.1890 1.4175 -1.9759 9 8 5.9790 0.8819 -1.2276 10 6 5.5830 1.7159 -3.3995 11 7 6.9579 1.2655 -3.6303 12 6 8.0794 2.1882 -3.3907 13 6 8.8179 1.7332 -2.1233 14 6 9.8669 0.6881 -2.4564 15 6 9.2879 -0.6289 -2.9404 16 6 8.6023 -0.4535 -4.2976 17 6 7.1848 0.0241 -4.0614 18 8 6.2529 -0.7248 -4.2656 19 6 4.0068 2.6114 0.7918 20 6 2.9809 2.4722 1.9441 21 7 1.7211 2.0856 1.2832 22 6 0.4625 2.2906 1.7821 23 1 -0.3802 2.3590 1.1101 24 6 0.2697 2.4105 3.1515 25 7 -0.8162 2.9923 3.6148 26 14 1.5515 1.7461 4.3369 27 1 2.6140 2.7638 4.5384 28 1 0.9084 1.4373 5.6393 29 1 2.1511 0.5091 3.7753 30 1 -0.3633 0.3879 0.9517 31 1 -0.3633 0.6302 -0.8117 32 1 -0.3633 -1.0181 -0.1399 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.3268 2.1740 -2.1328 36 1 4.9107 1.1930 -4.0798 37 1 5.5172 2.7892 -3.5775 38 1 8.7604 2.1648 -4.2413 39 1 7.6977 3.1998 -3.2523 40 1 8.1003 1.3094 -1.4207 41 1 9.3031 2.5941 -1.6633 42 1 10.4646 0.4986 -1.5648 43 1 10.5211 1.0866 -3.2319 44 1 8.5592 -0.9891 -2.2142 45 1 10.0904 -1.3604 -3.0356 46 1 8.5843 -1.4073 -4.8248 47 1 9.1439 0.2850 -4.8887 48 1 5.0239 2.4614 1.1540 49 1 3.9094 3.5770 0.2957 50 1 3.2969 1.6967 2.6418 51 1 2.8624 3.4232 2.4634 52 1 -0.9511 3.0758 4.5717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087821457.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:05 Heat of formation + Delta-G solvation = -75.353797 kcal Electronic energy + Delta-G solvation = -31121.317812 eV Core-core repulsion = 27120.118108 eV Total energy + Delta-G solvation = -4001.199704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.73811 -40.72363 -39.33499 -37.64990 -35.70507 -35.48862 -34.22385 -33.91265 -31.96697 -31.41602 -29.85540 -28.55989 -26.90409 -25.90708 -24.81154 -23.89978 -22.65400 -21.65540 -21.43951 -21.09422 -19.79265 -18.92199 -18.41089 -18.19287 -17.86394 -17.24561 -16.95344 -16.12158 -16.10188 -15.88553 -15.35350 -15.19704 -15.12649 -14.85860 -14.60902 -14.51926 -14.39671 -14.25895 -14.09108 -13.86589 -13.64747 -13.58018 -13.14664 -13.12585 -12.97110 -12.92243 -12.63667 -12.40350 -12.34338 -12.08320 -12.02689 -11.73160 -11.72510 -11.62794 -11.56996 -11.45328 -11.33388 -10.96876 -10.77329 -10.71425 -10.02301 -9.73035 -8.98731 -8.15854 -5.44392 1.27992 1.37439 1.44632 1.50218 1.65261 1.93196 2.34507 2.41569 3.07132 3.28926 3.51886 3.63669 3.73924 3.84249 3.89478 3.94899 3.98578 4.09904 4.21002 4.25403 4.31706 4.37460 4.40234 4.44844 4.50670 4.55733 4.58370 4.61992 4.63399 4.82827 4.83967 4.88467 4.90512 4.97012 5.04342 5.05288 5.11841 5.13773 5.16019 5.27928 5.30549 5.34030 5.44679 5.54495 5.63091 5.66495 5.79170 6.15745 6.37968 6.57646 6.77980 7.15697 7.29667 7.55436 8.13270 9.03855 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.002858 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.369769 B = 9794.403555 C =10385.573622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.063 0.937 5 C 0.151 3.849 6 H 0.072 0.928 7 N -0.705 5.705 8 C 0.495 3.505 9 O -0.567 6.567 10 C 0.093 3.907 11 N -0.588 5.588 12 C 0.110 3.890 13 C -0.154 4.154 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.510 3.490 18 O -0.602 6.602 19 C -0.121 4.121 20 C 0.108 3.892 21 N -0.613 5.613 22 C -0.204 4.204 23 H 0.074 0.926 24 C -0.029 4.029 25 N -0.954 5.954 26 Si 0.929 3.071 27 H -0.274 1.274 28 H -0.311 1.311 29 H -0.279 1.279 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.416 0.584 36 H 0.112 0.888 37 H 0.153 0.847 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.029 0.971 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.124 0.876 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.011 0.989 51 H 0.047 0.953 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.507 0.592 -20.075 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.051 3.949 4 H 0.081 0.919 5 C 0.045 3.955 6 H 0.090 0.910 7 N -0.358 5.358 8 C 0.281 3.719 9 O -0.446 6.446 10 C -0.033 4.033 11 N -0.318 5.318 12 C -0.011 4.011 13 C -0.193 4.193 14 C -0.153 4.153 15 C -0.148 4.148 16 C -0.168 4.168 17 C 0.300 3.700 18 O -0.484 6.484 19 C -0.160 4.160 20 C -0.017 4.017 21 N -0.339 5.339 22 C -0.333 4.333 23 H 0.091 0.909 24 C -0.223 4.223 25 N -0.601 5.601 26 Si 0.760 3.240 27 H -0.200 1.200 28 H -0.240 1.240 29 H -0.205 1.205 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.253 0.747 36 H 0.129 0.871 37 H 0.170 0.830 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.048 0.952 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.142 0.858 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.029 0.971 51 H 0.065 0.935 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.456 -0.097 -19.505 30.507 hybrid contribution -0.548 -0.501 1.478 1.654 sum 22.909 -0.599 -18.027 29.157 Atomic orbital electron populations 1.21797 0.95597 1.00496 1.02421 1.21859 0.96895 0.97211 1.00185 1.21344 0.91884 0.92539 0.89182 0.91931 1.21631 0.93920 0.97878 0.82101 0.90958 1.45817 1.15390 1.62326 1.12226 1.21764 0.81432 0.77477 0.91238 1.90645 1.51627 1.43466 1.58819 1.21530 0.85454 1.04535 0.91809 1.47620 1.06938 1.13192 1.64081 1.22300 0.87432 0.92931 0.98427 1.22032 0.98899 0.99859 0.98467 1.21123 0.97936 0.93988 1.02210 1.21200 0.99800 0.99375 0.94461 1.22012 0.90730 1.04154 0.99879 1.21267 0.92723 0.81039 0.75001 1.90691 1.47410 1.55444 1.54865 1.22982 0.97900 0.99375 0.95783 1.21950 0.86845 0.97373 0.95511 1.44873 1.01216 1.67522 1.20318 1.18478 0.84281 1.40227 0.90308 0.90875 1.25592 0.97705 1.00887 0.98164 1.69903 1.30175 1.46536 1.13481 0.86158 0.79566 0.79761 0.78548 1.20048 1.23986 1.20465 0.92939 0.92847 0.93039 0.91316 0.94610 0.74705 0.87055 0.82962 0.87389 0.87611 0.92566 0.89699 0.92130 0.89165 0.95205 0.89077 0.88821 0.85809 0.90543 0.89226 0.97096 0.93483 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.10 71.98 0.66 -4.82 16 2 C -0.12 -4.46 5.44 30.60 0.17 -4.29 16 3 C 0.16 5.68 2.97 45.34 0.13 5.82 16 4 H 0.06 2.11 7.67 -2.39 -0.02 2.09 16 5 C 0.15 4.80 2.76 46.18 0.13 4.93 16 6 H 0.07 2.65 7.41 -2.39 -0.02 2.63 16 7 N -0.70 -16.69 5.20 -436.93 -2.27 -18.96 16 8 C 0.49 12.23 7.89 87.65 0.69 12.92 16 9 O -0.57 -18.64 13.94 -3.02 -0.04 -18.68 16 10 C 0.09 1.54 5.87 85.63 0.50 2.04 16 11 N -0.59 -10.14 1.96 -824.35 -1.61 -11.75 16 12 C 0.11 1.07 5.95 86.44 0.51 1.58 16 13 C -0.15 -2.13 5.75 30.39 0.17 -1.96 16 14 C -0.12 -1.29 5.27 29.80 0.16 -1.14 16 15 C -0.11 -1.65 5.67 30.22 0.17 -1.47 16 16 C -0.13 -1.83 5.57 30.10 0.17 -1.67 16 17 C 0.51 11.53 6.79 88.11 0.60 12.13 16 18 O -0.60 -19.66 16.60 -3.05 -0.05 -19.71 16 19 C -0.12 -3.93 6.77 31.99 0.22 -3.72 16 20 C 0.11 4.57 4.75 86.86 0.41 4.99 16 21 N -0.61 -27.92 2.85 -668.25 -1.91 -29.82 16 22 C -0.20 -11.06 7.98 84.03 0.67 -10.39 16 23 H 0.07 4.23 7.25 -2.91 -0.02 4.21 16 24 C -0.03 -1.66 5.45 84.86 0.46 -1.20 16 25 N -0.95 -59.17 13.97 21.65 0.30 -58.87 16 26 Si 0.93 47.59 24.36 68.60 1.67 49.26 16 27 H -0.27 -13.35 6.73 99.48 0.67 -12.68 16 28 H -0.31 -16.24 7.11 99.48 0.71 -15.53 16 29 H -0.28 -14.22 6.78 99.48 0.67 -13.55 16 30 H 0.05 2.40 5.49 -2.38 -0.01 2.38 16 31 H 0.05 1.85 8.12 -2.39 -0.02 1.83 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.42 7.29 8.31 -92.71 -0.77 6.52 16 36 H 0.11 1.97 7.37 -2.39 -0.02 1.95 16 37 H 0.15 1.11 7.84 -2.39 -0.02 1.09 16 38 H 0.11 0.43 6.71 -2.39 -0.02 0.41 16 39 H 0.11 0.61 7.76 -2.39 -0.02 0.59 16 40 H 0.06 1.32 5.70 -2.38 -0.01 1.31 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.09 0.49 7.88 -2.39 -0.02 0.47 16 44 H 0.03 0.69 7.86 -2.39 -0.02 0.67 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.09 1.38 8.13 -2.39 -0.02 1.36 16 47 H 0.12 0.85 6.76 -2.39 -0.02 0.84 16 48 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 50 H 0.01 0.51 5.44 -2.39 -0.01 0.50 16 51 H 0.05 2.10 7.29 -2.39 -0.02 2.08 16 52 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -80.00 389.93 1.99 -78.01 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.08 Total: 16.78 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.82 Total: 13.74 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -5.49 Total: -119.40 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.09 Total: -38.39 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.67 Total: 49.26 kcal Total: -80.00 1.99 -78.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087821457.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.658 kcal (2) G-P(sol) polarization free energy of solvation -79.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds