Wall clock time and date at job start Tue Mar 31 2020 20:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47115 * 2 1 4 4 H 1.08998 * 109.99678 * 55.63957 * 3 2 1 5 5 C 1.54317 * 109.88336 * 294.54330 * 3 2 1 6 6 H 1.09004 * 110.72033 * 336.74718 * 5 3 2 7 7 N 1.46499 * 110.72322 * 99.84981 * 5 3 2 8 8 C 1.34773 * 120.00077 * 202.55668 * 7 5 3 9 9 O 1.21277 * 120.00038 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99945 * 179.97438 * 8 7 5 11 11 C 1.53041 * 109.46394 * 300.02982 * 10 8 7 12 12 C 1.53193 * 109.31272 * 178.59505 * 11 10 8 13 13 N 1.46934 * 108.76137 * 54.66088 * 12 11 10 14 14 C 1.34777 * 120.63062 * 126.35863 * 13 12 11 15 15 C 1.50690 * 119.99985 * 174.69760 * 14 13 12 16 16 O 1.21282 * 119.99718 * 354.69891 * 14 13 12 17 17 C 1.46915 * 118.73651 * 306.37760 * 13 12 11 18 18 C 1.53039 * 109.46329 * 179.97438 * 10 8 7 19 19 C 1.55163 * 102.94267 * 218.38947 * 5 3 2 20 20 C 1.54909 * 101.58095 * 35.49878 * 19 5 3 21 21 N 1.47028 * 109.88058 * 176.73091 * 3 2 1 22 22 C 1.36936 * 125.65062 * 298.32431 * 21 3 2 23 23 H 1.07995 * 119.99684 * 3.77155 * 22 21 3 24 24 C 1.38805 * 119.99930 * 183.77428 * 22 21 3 25 25 N 1.31622 * 119.99924 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00117 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46885 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47371 * 119.99804 * 26 24 22 29 29 H 1.48501 * 109.47031 * 240.00132 * 26 24 22 30 30 H 1.09002 * 109.47021 * 185.04484 * 1 2 3 31 31 H 1.09008 * 109.46622 * 305.03544 * 1 2 3 32 32 H 1.08995 * 109.47418 * 65.03636 * 1 2 3 33 33 H 1.08999 * 109.46749 * 240.00633 * 2 1 3 34 34 H 1.09002 * 109.47781 * 120.00673 * 2 1 3 35 35 H 0.97004 * 119.99758 * 22.55681 * 7 5 3 36 36 H 1.09000 * 109.45674 * 60.00436 * 10 8 7 37 37 H 1.08998 * 109.49925 * 298.56832 * 11 10 8 38 38 H 1.09008 * 109.49194 * 58.66337 * 11 10 8 39 39 H 1.08993 * 109.60193 * 294.87188 * 12 11 10 40 40 H 1.09002 * 109.58253 * 174.43407 * 12 11 10 41 41 H 1.09001 * 109.47628 * 4.60943 * 15 14 13 42 42 H 1.09001 * 109.47224 * 124.60223 * 15 14 13 43 43 H 1.09000 * 109.47834 * 244.60113 * 15 14 13 44 44 H 1.08995 * 109.59108 * 293.82288 * 17 13 12 45 45 H 1.09002 * 109.70270 * 173.46826 * 17 13 12 46 46 H 1.09002 * 109.49530 * 301.34475 * 18 10 8 47 47 H 1.09002 * 109.49837 * 61.40096 * 18 10 8 48 48 H 1.08998 * 111.00788 * 153.57922 * 19 5 3 49 49 H 1.09004 * 111.00264 * 277.42972 * 19 5 3 50 50 H 1.09003 * 110.36883 * 204.15030 * 20 19 5 51 51 H 1.09004 * 110.36346 * 81.83149 * 20 19 5 52 52 H 0.97009 * 119.99741 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6192 1.9866 0.8455 5 6 1.6466 2.1383 -1.3201 6 1 1.4751 1.4037 -2.1070 7 7 0.4614 2.9781 -1.1302 8 6 -0.3104 3.3031 -2.1862 9 8 -0.0239 2.9000 -3.2936 10 6 -1.5299 4.1666 -1.9908 11 6 -2.4952 3.4748 -1.0255 12 6 -3.7173 4.3711 -0.8020 13 7 -4.3046 4.7036 -2.1072 14 6 -5.6101 4.4744 -2.3513 15 6 -6.2251 4.9293 -3.6496 16 8 -6.2899 3.9021 -1.5259 17 6 -3.4414 5.2901 -3.1413 18 6 -2.2222 4.3838 -3.3383 19 6 2.8928 3.0053 -1.6407 20 6 4.0417 2.0973 -1.1355 21 7 3.5081 1.4538 0.0788 22 6 4.2559 0.9507 1.1098 23 1 3.7714 0.4429 1.9306 24 6 5.6366 1.0934 1.0999 25 7 6.2270 1.7120 0.0992 26 14 6.6567 0.4065 2.5058 27 1 5.7604 -0.2385 3.4987 28 1 7.6151 -0.5974 1.9777 29 1 7.4056 1.5100 3.1592 30 1 -0.3633 -1.0237 0.0904 31 1 -0.3633 0.5900 0.8415 32 1 -0.3634 0.4337 -0.9316 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.2321 3.3003 -0.2444 36 1 -1.2305 5.1295 -1.5770 37 1 -2.8145 2.5230 -1.4501 38 1 -1.9941 3.2992 -0.0735 39 1 -3.4118 5.2862 -0.2950 40 1 -4.4521 3.8422 -0.1949 41 1 -5.4498 5.3461 -4.2926 42 1 -6.6921 4.0798 -4.1478 43 1 -6.9781 5.6911 -3.4478 44 1 -3.1134 6.2803 -2.8251 45 1 -3.9926 5.3698 -4.0783 46 1 -1.5267 4.8552 -4.0327 47 1 -2.5435 3.4233 -3.7412 48 1 2.9789 3.1845 -2.7124 49 1 2.8669 3.9455 -1.0898 50 1 4.9198 2.6960 -0.8930 51 1 4.2892 1.3459 -1.8854 52 1 7.1920 1.8114 0.0921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087823599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:02 Heat of formation + Delta-G solvation = -52.645746 kcal Electronic energy + Delta-G solvation = -30618.888220 eV Core-core repulsion = 26618.673211 eV Total energy + Delta-G solvation = -4000.215009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.74257 -39.71652 -38.04414 -37.03745 -34.13255 -33.48955 -32.77943 -31.80222 -31.63656 -29.80971 -28.98883 -26.88609 -25.89118 -24.39947 -23.52659 -22.52794 -21.66888 -20.43509 -20.14424 -19.63567 -19.16223 -17.67837 -16.94076 -16.71599 -16.23243 -15.94397 -15.81602 -15.09276 -14.84764 -14.36032 -14.28295 -14.13782 -13.99929 -13.78207 -13.66751 -13.43713 -13.17234 -12.97258 -12.75222 -12.52094 -12.32551 -12.04383 -12.00624 -11.86428 -11.66270 -11.59161 -11.22111 -11.09337 -10.96310 -10.93725 -10.86128 -10.66632 -10.44837 -10.33700 -10.09836 -10.08743 -9.72576 -9.61339 -9.51717 -9.01392 -8.71530 -8.60875 -6.90178 -5.66571 -3.12704 2.29487 2.62972 2.76054 3.30637 3.36915 3.42949 3.44947 4.18082 4.24121 4.43381 4.52714 4.54308 4.66131 4.71891 4.88797 4.95576 5.02361 5.10307 5.17341 5.26733 5.31875 5.36165 5.43049 5.47670 5.49079 5.51501 5.56166 5.66894 5.70884 5.77619 5.80858 5.83342 5.98034 6.01867 6.14671 6.21415 6.29767 6.37684 6.43311 6.54523 6.67251 6.69850 6.88297 7.03489 7.10535 7.46885 7.61173 7.71490 7.82892 7.83196 8.34283 8.39894 9.17832 9.78683 10.41737 11.33833 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025117 B = 0.002378 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.508091 B =11769.606739 C =12284.109465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.161 3.839 4 H 0.036 0.964 5 C 0.137 3.863 6 H 0.091 0.909 7 N -0.712 5.712 8 C 0.516 3.484 9 O -0.543 6.543 10 C -0.108 4.108 11 C -0.125 4.125 12 C 0.112 3.888 13 N -0.614 5.614 14 C 0.513 3.487 15 C -0.181 4.181 16 O -0.550 6.550 17 C 0.101 3.899 18 C -0.115 4.115 19 C -0.152 4.152 20 C 0.144 3.856 21 N -0.595 5.595 22 C -0.218 4.218 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.914 3.086 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.118 0.882 51 H 0.011 0.989 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.490 9.437 -6.242 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.032 3.968 6 H 0.109 0.891 7 N -0.362 5.362 8 C 0.302 3.698 9 O -0.420 6.420 10 C -0.129 4.129 11 C -0.164 4.164 12 C -0.011 4.011 13 N -0.348 5.348 14 C 0.302 3.698 15 C -0.240 4.240 16 O -0.428 6.428 17 C -0.021 4.021 18 C -0.153 4.153 19 C -0.191 4.191 20 C 0.019 3.981 21 N -0.319 5.319 22 C -0.347 4.347 23 H 0.096 0.904 24 C -0.207 4.207 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.231 0.769 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.135 0.865 51 H 0.029 0.971 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.395 8.816 -6.525 23.157 hybrid contribution 0.631 -0.271 1.080 1.280 sum -19.764 8.544 -5.445 22.210 Atomic orbital electron populations 1.21755 0.97108 1.00550 1.00930 1.22030 0.93797 0.99222 1.02212 1.21040 0.86976 0.93288 0.93400 0.94685 1.22120 0.83590 0.92546 0.98519 0.89127 1.46090 1.27465 1.52346 1.10315 1.20425 0.83873 0.80833 0.84705 1.90694 1.72599 1.54285 1.24413 1.21336 0.93752 0.99757 0.98078 1.21923 0.95367 0.99456 0.99658 1.21607 0.95433 0.99238 0.84780 1.48219 1.08958 1.62828 1.14792 1.20815 0.81443 0.78335 0.89165 1.22044 1.02485 1.04118 0.95322 1.90717 1.61226 1.42048 1.48771 1.21974 0.91653 0.96689 0.91795 1.21733 0.96185 1.01245 0.96149 1.23378 0.96505 0.99147 1.00111 1.22129 0.95498 0.93852 0.86616 1.44491 0.98320 1.69138 1.19941 1.19068 0.88478 1.29033 0.98092 0.90406 1.24799 0.96483 1.01058 0.98315 1.69721 1.08741 1.47435 1.30966 0.86002 0.80221 0.78083 0.81208 1.20541 1.21770 1.21753 0.93680 0.93394 0.93308 0.92447 0.91863 0.76916 0.88367 0.90711 0.89891 0.91082 0.88578 0.89764 0.88759 0.88693 0.90918 0.88670 0.89547 0.90561 0.92131 0.92056 0.86490 0.97111 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.59 37.16 0.36 -1.73 16 2 C -0.13 -2.39 5.41 -26.73 -0.14 -2.53 16 3 C 0.16 3.11 2.93 -66.95 -0.20 2.91 16 4 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 5 C 0.14 2.38 1.97 -66.10 -0.13 2.25 16 6 H 0.09 1.74 7.27 -51.93 -0.38 1.36 16 7 N -0.71 -9.55 4.79 -52.03 -0.25 -9.80 16 8 C 0.52 6.81 7.15 -10.99 -0.08 6.73 16 9 O -0.54 -9.32 15.66 5.56 0.09 -9.23 16 10 C -0.11 -0.96 2.49 -91.73 -0.23 -1.19 16 11 C -0.13 -1.03 5.27 -26.61 -0.14 -1.17 16 12 C 0.11 0.89 6.44 -3.71 -0.02 0.87 16 13 N -0.61 -4.91 2.97 -172.78 -0.51 -5.42 16 14 C 0.51 4.89 7.80 -10.99 -0.09 4.80 16 15 C -0.18 -0.98 10.11 36.00 0.36 -0.62 16 16 O -0.55 -7.63 16.52 5.56 0.09 -7.54 16 17 C 0.10 0.58 6.30 -3.72 -0.02 0.56 16 18 C -0.11 -0.93 4.65 -26.61 -0.12 -1.06 16 19 C -0.15 -2.93 6.78 -24.58 -0.17 -3.10 16 20 C 0.14 3.45 6.04 -2.53 -0.02 3.43 16 21 N -0.59 -14.45 3.13 -162.57 -0.51 -14.96 16 22 C -0.22 -5.82 9.80 -15.06 -0.15 -5.97 16 23 H 0.08 2.01 7.68 -52.49 -0.40 1.61 16 24 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -26.23 10.04 55.49 0.56 -25.67 16 26 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.05 0.70 7.37 -51.93 -0.38 0.32 16 33 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 34 H 0.06 1.22 7.76 -51.93 -0.40 0.81 16 35 H 0.40 4.43 7.74 -40.82 -0.32 4.11 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.60 7.53 -51.92 -0.39 0.21 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.92 7.00 -51.93 -0.36 0.55 16 41 H 0.08 0.27 5.14 -51.93 -0.27 0.01 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.10 0.36 5.14 -51.93 -0.27 0.10 16 46 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 47 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.12 3.15 5.64 -51.93 -0.29 2.86 16 51 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 52 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 400.28 15.07 6.03 6.03 Total: -1.00 -33.52 400.28 -9.31 -42.83 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.91 Total: 3.34 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.88 Total: 3.79 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.71 Total: -55.85 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.18 Total: -16.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.52 -9.31 -42.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087823599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.814 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds