Wall clock time and date at job start Tue Mar 31 2020 20:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47115 * 2 1 4 4 H 1.08998 * 109.99678 * 55.63957 * 3 2 1 5 5 C 1.54317 * 109.88336 * 294.54330 * 3 2 1 6 6 H 1.09004 * 110.72033 * 336.74718 * 5 3 2 7 7 N 1.46499 * 110.72322 * 99.84981 * 5 3 2 8 8 C 1.34773 * 120.00077 * 202.55668 * 7 5 3 9 9 O 1.21277 * 120.00038 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99945 * 179.97438 * 8 7 5 11 11 C 1.53041 * 109.46394 * 300.02982 * 10 8 7 12 12 C 1.53193 * 109.31272 * 178.59505 * 11 10 8 13 13 N 1.46934 * 108.76137 * 54.66088 * 12 11 10 14 14 C 1.34777 * 120.63062 * 126.35863 * 13 12 11 15 15 C 1.50690 * 119.99985 * 174.69760 * 14 13 12 16 16 O 1.21282 * 119.99718 * 354.69891 * 14 13 12 17 17 C 1.46915 * 118.73651 * 306.37760 * 13 12 11 18 18 C 1.53039 * 109.46329 * 179.97438 * 10 8 7 19 19 C 1.55163 * 102.94267 * 218.38947 * 5 3 2 20 20 C 1.54909 * 101.58095 * 35.49878 * 19 5 3 21 21 N 1.47028 * 109.88058 * 176.73091 * 3 2 1 22 22 C 1.36936 * 125.65062 * 298.32431 * 21 3 2 23 23 H 1.07995 * 119.99684 * 3.77155 * 22 21 3 24 24 C 1.38805 * 119.99930 * 183.77428 * 22 21 3 25 25 N 1.31622 * 119.99924 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00117 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46885 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47371 * 119.99804 * 26 24 22 29 29 H 1.48501 * 109.47031 * 240.00132 * 26 24 22 30 30 H 1.09002 * 109.47021 * 185.04484 * 1 2 3 31 31 H 1.09008 * 109.46622 * 305.03544 * 1 2 3 32 32 H 1.08995 * 109.47418 * 65.03636 * 1 2 3 33 33 H 1.08999 * 109.46749 * 240.00633 * 2 1 3 34 34 H 1.09002 * 109.47781 * 120.00673 * 2 1 3 35 35 H 0.97004 * 119.99758 * 22.55681 * 7 5 3 36 36 H 1.09000 * 109.45674 * 60.00436 * 10 8 7 37 37 H 1.08998 * 109.49925 * 298.56832 * 11 10 8 38 38 H 1.09008 * 109.49194 * 58.66337 * 11 10 8 39 39 H 1.08993 * 109.60193 * 294.87188 * 12 11 10 40 40 H 1.09002 * 109.58253 * 174.43407 * 12 11 10 41 41 H 1.09001 * 109.47628 * 4.60943 * 15 14 13 42 42 H 1.09001 * 109.47224 * 124.60223 * 15 14 13 43 43 H 1.09000 * 109.47834 * 244.60113 * 15 14 13 44 44 H 1.08995 * 109.59108 * 293.82288 * 17 13 12 45 45 H 1.09002 * 109.70270 * 173.46826 * 17 13 12 46 46 H 1.09002 * 109.49530 * 301.34475 * 18 10 8 47 47 H 1.09002 * 109.49837 * 61.40096 * 18 10 8 48 48 H 1.08998 * 111.00788 * 153.57922 * 19 5 3 49 49 H 1.09004 * 111.00264 * 277.42972 * 19 5 3 50 50 H 1.09003 * 110.36883 * 204.15030 * 20 19 5 51 51 H 1.09004 * 110.36346 * 81.83149 * 20 19 5 52 52 H 0.97009 * 119.99741 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6192 1.9866 0.8455 5 6 1.6466 2.1383 -1.3201 6 1 1.4751 1.4037 -2.1070 7 7 0.4614 2.9781 -1.1302 8 6 -0.3104 3.3031 -2.1862 9 8 -0.0239 2.9000 -3.2936 10 6 -1.5299 4.1666 -1.9908 11 6 -2.4952 3.4748 -1.0255 12 6 -3.7173 4.3711 -0.8020 13 7 -4.3046 4.7036 -2.1072 14 6 -5.6101 4.4744 -2.3513 15 6 -6.2251 4.9293 -3.6496 16 8 -6.2899 3.9021 -1.5259 17 6 -3.4414 5.2901 -3.1413 18 6 -2.2222 4.3838 -3.3383 19 6 2.8928 3.0053 -1.6407 20 6 4.0417 2.0973 -1.1355 21 7 3.5081 1.4538 0.0788 22 6 4.2559 0.9507 1.1098 23 1 3.7714 0.4429 1.9306 24 6 5.6366 1.0934 1.0999 25 7 6.2270 1.7120 0.0992 26 14 6.6567 0.4065 2.5058 27 1 5.7604 -0.2385 3.4987 28 1 7.6151 -0.5974 1.9777 29 1 7.4056 1.5100 3.1592 30 1 -0.3633 -1.0237 0.0904 31 1 -0.3633 0.5900 0.8415 32 1 -0.3634 0.4337 -0.9316 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.2321 3.3003 -0.2444 36 1 -1.2305 5.1295 -1.5770 37 1 -2.8145 2.5230 -1.4501 38 1 -1.9941 3.2992 -0.0735 39 1 -3.4118 5.2862 -0.2950 40 1 -4.4521 3.8422 -0.1949 41 1 -5.4498 5.3461 -4.2926 42 1 -6.6921 4.0798 -4.1478 43 1 -6.9781 5.6911 -3.4478 44 1 -3.1134 6.2803 -2.8251 45 1 -3.9926 5.3698 -4.0783 46 1 -1.5267 4.8552 -4.0327 47 1 -2.5435 3.4233 -3.7412 48 1 2.9789 3.1845 -2.7124 49 1 2.8669 3.9455 -1.0898 50 1 4.9198 2.6960 -0.8930 51 1 4.2892 1.3459 -1.8854 52 1 7.1920 1.8114 0.0921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087823599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:01 Heat of formation + Delta-G solvation = -74.585562 kcal Electronic energy + Delta-G solvation = -30619.839602 eV Core-core repulsion = 26618.673211 eV Total energy + Delta-G solvation = -4001.166391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58527 -40.75088 -39.44590 -37.95471 -35.64964 -34.50580 -34.09292 -33.33480 -32.39683 -30.92047 -30.21269 -28.22259 -26.98584 -26.07738 -24.19147 -23.78617 -22.71274 -22.00897 -21.47748 -20.89337 -19.89299 -18.78344 -18.46338 -17.73326 -17.37001 -16.85472 -16.67917 -16.48564 -16.03365 -15.74826 -15.44349 -15.43972 -14.97744 -14.87976 -14.64636 -14.38328 -14.29512 -13.99911 -13.72991 -13.61074 -13.48944 -13.23959 -13.13551 -12.94332 -12.90930 -12.74133 -12.64592 -12.55039 -12.22976 -12.17500 -12.04820 -11.95145 -11.92325 -11.75311 -11.63120 -11.46341 -11.32886 -10.82642 -10.75972 -10.68661 -9.94981 -9.66692 -8.88964 -7.72647 -5.20915 1.47895 1.48449 1.58345 1.61248 1.69076 2.06028 2.20029 2.52033 3.34510 3.51582 3.62536 3.63671 3.78390 3.84572 3.89636 3.96756 4.07700 4.18671 4.20407 4.33090 4.36127 4.40380 4.41973 4.47601 4.59385 4.62730 4.66545 4.71929 4.75104 4.77898 4.82357 4.85920 4.89994 4.98016 5.02988 5.13976 5.15024 5.16353 5.20781 5.28974 5.34347 5.44326 5.50060 5.55497 5.59734 5.67534 5.81936 6.34018 6.42890 6.63099 7.11879 7.17338 7.32257 7.79327 8.42272 9.26208 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025117 B = 0.002378 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.508091 B =11769.606739 C =12284.109465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.052 0.948 5 C 0.157 3.843 6 H 0.073 0.927 7 N -0.702 5.702 8 C 0.516 3.484 9 O -0.583 6.583 10 C -0.097 4.097 11 C -0.118 4.118 12 C 0.111 3.889 13 N -0.613 5.613 14 C 0.503 3.497 15 C -0.175 4.175 16 O -0.604 6.604 17 C 0.105 3.895 18 C -0.113 4.113 19 C -0.137 4.137 20 C 0.147 3.853 21 N -0.613 5.613 22 C -0.223 4.223 23 H 0.084 0.916 24 C -0.070 4.070 25 N -0.949 5.949 26 Si 0.977 3.023 27 H -0.266 1.266 28 H -0.298 1.298 29 H -0.292 1.292 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.412 0.588 36 H 0.128 0.872 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.087 0.913 51 H -0.021 1.021 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.582 11.147 -5.665 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.051 3.949 4 H 0.069 0.931 5 C 0.051 3.949 6 H 0.091 0.909 7 N -0.353 5.353 8 C 0.304 3.696 9 O -0.463 6.463 10 C -0.118 4.118 11 C -0.156 4.156 12 C -0.011 4.011 13 N -0.346 5.346 14 C 0.294 3.706 15 C -0.234 4.234 16 O -0.486 6.486 17 C -0.016 4.016 18 C -0.152 4.152 19 C -0.176 4.176 20 C 0.021 3.979 21 N -0.338 5.338 22 C -0.352 4.352 23 H 0.102 0.898 24 C -0.262 4.262 25 N -0.600 5.600 26 Si 0.806 3.194 27 H -0.190 1.190 28 H -0.225 1.225 29 H -0.219 1.219 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.249 0.751 36 H 0.146 0.854 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.136 0.864 46 H 0.104 0.896 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.105 0.895 51 H -0.003 1.003 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.523 10.549 -5.937 25.570 hybrid contribution 1.285 -0.833 0.856 1.754 sum -21.238 9.716 -5.081 23.901 Atomic orbital electron populations 1.21636 0.93820 1.01871 1.01730 1.21918 0.96561 0.97707 1.00492 1.21240 0.84331 0.94504 0.94778 0.93075 1.21606 0.84423 0.92079 0.96838 0.90937 1.45896 1.26153 1.51773 1.11508 1.21212 0.84433 0.80286 0.83662 1.90688 1.73716 1.55801 1.26097 1.21367 0.91570 0.99917 0.98986 1.21859 0.95395 0.98437 0.99937 1.21619 0.94555 0.99983 0.84969 1.48370 1.08911 1.62084 1.15207 1.21567 0.81686 0.77468 0.89870 1.22075 1.03349 1.04481 0.93448 1.90691 1.62546 1.44603 1.50735 1.22136 0.90381 0.96733 0.92359 1.21718 0.97150 1.00767 0.95541 1.23173 0.95589 0.98721 1.00157 1.21862 0.96465 0.93357 0.86179 1.44728 1.00575 1.69070 1.19382 1.19406 0.88977 1.28248 0.98562 0.89815 1.25604 0.97753 1.02142 1.00680 1.69973 1.08385 1.48946 1.32682 0.85018 0.78544 0.77085 0.78746 1.18985 1.22503 1.21870 0.92432 0.91380 0.93358 0.94550 0.93240 0.75079 0.85385 0.92888 0.88430 0.88666 0.90534 0.87169 0.88658 0.87570 0.88394 0.86403 0.89564 0.92814 0.91832 0.91021 0.89504 1.00259 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.59 71.98 0.69 -2.83 16 2 C -0.13 -4.50 5.41 30.59 0.17 -4.34 16 3 C 0.16 5.99 2.93 45.34 0.13 6.12 16 4 H 0.05 1.81 7.70 -2.39 -0.02 1.79 16 5 C 0.16 5.34 1.97 46.18 0.09 5.44 16 6 H 0.07 2.80 7.27 -2.39 -0.02 2.78 16 7 N -0.70 -17.27 4.79 -436.93 -2.09 -19.37 16 8 C 0.52 12.59 7.15 87.66 0.63 13.21 16 9 O -0.58 -19.54 15.66 -3.02 -0.05 -19.59 16 10 C -0.10 -1.43 2.49 -11.51 -0.03 -1.46 16 11 C -0.12 -1.64 5.27 30.67 0.16 -1.47 16 12 C 0.11 1.50 6.44 86.36 0.56 2.06 16 13 N -0.61 -8.23 2.97 -818.93 -2.43 -10.67 16 14 C 0.50 8.80 7.80 87.65 0.68 9.48 16 15 C -0.18 -1.45 10.11 71.23 0.72 -0.73 16 16 O -0.60 -16.68 16.52 -3.04 -0.05 -16.73 16 17 C 0.11 0.81 6.30 86.36 0.54 1.35 16 18 C -0.11 -1.55 4.65 30.67 0.14 -1.41 16 19 C -0.14 -5.28 6.78 31.99 0.22 -5.07 16 20 C 0.15 7.29 6.04 86.85 0.52 7.82 16 21 N -0.61 -30.21 3.13 -668.26 -2.09 -32.30 16 22 C -0.22 -11.99 9.80 84.03 0.82 -11.16 16 23 H 0.08 4.30 7.68 -2.91 -0.02 4.28 16 24 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 25 N -0.95 -55.98 10.04 21.65 0.22 -55.76 16 26 Si 0.98 45.02 29.55 68.60 2.03 47.05 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.05 1.29 7.37 -2.39 -0.02 1.28 16 33 H 0.04 1.42 8.06 -2.39 -0.02 1.40 16 34 H 0.05 1.87 7.76 -2.39 -0.02 1.86 16 35 H 0.41 7.79 7.74 -92.71 -0.72 7.08 16 36 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 1.07 7.53 -2.38 -0.02 1.05 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.39 7.00 -2.39 -0.02 1.37 16 41 H 0.11 0.28 5.14 -2.39 -0.01 0.27 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.12 0.39 5.14 -2.39 -0.01 0.38 16 46 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 47 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 48 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 50 H 0.09 4.89 5.64 -2.39 -0.01 4.87 16 51 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 52 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -77.17 400.28 2.24 -74.93 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.19 Total: 18.84 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.52 Total: 13.60 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -6.40 Total: -118.10 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.10 Total: -36.32 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -77.17 2.24 -74.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087823599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.340 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds