Wall clock time and date at job start Tue Mar 31 2020 20:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47068 * 2 1 4 4 H 1.09000 * 109.99681 * 56.16896 * 3 2 1 5 5 C 1.54323 * 109.88160 * 295.07809 * 3 2 1 6 6 H 1.09000 * 110.72078 * 336.74740 * 5 3 2 7 7 N 1.46500 * 110.72418 * 99.85052 * 5 3 2 8 8 C 1.34764 * 120.00167 * 202.55615 * 7 5 3 9 9 O 1.21283 * 120.00110 * 0.02562 * 8 7 5 10 10 C 1.50704 * 120.00146 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.47018 * 300.00321 * 10 8 7 12 12 C 1.52999 * 109.47023 * 60.00558 * 10 8 7 13 13 N 1.46505 * 109.47092 * 180.02562 * 10 8 7 14 14 C 1.45756 * 117.94467 * 120.00349 * 13 10 8 15 15 C 1.52920 * 110.48489 * 160.92137 * 14 13 10 16 16 C 1.53355 * 108.67267 * 50.75529 * 15 14 13 17 17 C 1.53071 * 108.42138 * 292.46366 * 16 15 14 18 18 C 1.33355 * 117.94574 * 299.73973 * 13 10 8 19 19 O 1.21273 * 118.24601 * 2.22255 * 18 13 10 20 20 C 1.55163 * 103.09681 * 218.30109 * 5 3 2 21 21 C 1.54901 * 101.58479 * 35.58807 * 20 5 3 22 22 N 1.47426 * 104.83228 * 322.99173 * 21 20 5 23 23 C 1.36936 * 125.64513 * 204.16362 * 22 21 20 24 24 H 1.08009 * 119.99675 * 168.13045 * 23 22 21 25 25 C 1.38806 * 120.00557 * 348.13947 * 23 22 21 26 26 N 1.31623 * 119.99689 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00352 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46810 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.46960 * 119.99619 * 27 25 23 30 30 H 1.48495 * 109.47230 * 239.99923 * 27 25 23 31 31 H 1.08998 * 109.47138 * 305.50127 * 1 2 3 32 32 H 1.09005 * 109.47198 * 65.49648 * 1 2 3 33 33 H 1.08992 * 109.47319 * 185.49911 * 1 2 3 34 34 H 1.08995 * 109.47146 * 240.00628 * 2 1 3 35 35 H 1.08999 * 109.47164 * 119.99742 * 2 1 3 36 36 H 0.97005 * 119.99276 * 22.55234 * 7 5 3 37 37 H 1.09001 * 109.47307 * 59.99501 * 12 10 8 38 38 H 1.08997 * 109.47488 * 180.02562 * 12 10 8 39 39 H 1.09000 * 109.46620 * 299.99790 * 12 10 8 40 40 H 1.08995 * 109.29673 * 281.23500 * 14 13 10 41 41 H 1.08993 * 109.29892 * 40.61298 * 14 13 10 42 42 H 1.09001 * 109.60348 * 170.50216 * 15 14 13 43 43 H 1.08991 * 109.60871 * 290.83584 * 15 14 13 44 44 H 1.08997 * 109.67691 * 52.19755 * 16 15 14 45 45 H 1.09005 * 109.67224 * 172.73351 * 16 15 14 46 46 H 1.09001 * 109.39630 * 169.03083 * 17 16 15 47 47 H 1.08996 * 109.40078 * 288.85696 * 17 16 15 48 48 H 1.09005 * 111.00157 * 153.66846 * 20 5 3 49 49 H 1.09002 * 111.00088 * 277.47488 * 20 5 3 50 50 H 1.09006 * 110.36350 * 81.82780 * 21 20 5 51 51 H 1.09001 * 110.37235 * 204.04205 * 21 20 5 52 52 H 0.97006 * 119.99569 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6266 1.9841 0.8509 5 6 1.6350 2.1424 -1.3144 6 1 1.4566 1.4103 -2.1020 7 7 0.4515 2.9816 -1.1116 8 6 -0.3295 3.3099 -2.1597 9 8 -0.0528 2.9101 -3.2708 10 6 -1.5473 4.1727 -1.9509 11 1 -2.2290 3.6778 -1.2593 12 6 -1.1223 5.5227 -1.3697 13 7 -2.2221 4.3837 -3.2341 14 6 -3.6004 3.9277 -3.3641 15 6 -4.2853 4.6229 -4.5414 16 6 -3.3932 4.4826 -5.7809 17 6 -2.1201 5.3022 -5.5558 18 6 -1.5386 4.9857 -4.2081 19 8 -0.3839 5.2895 -3.9958 20 6 2.8755 3.0136 -1.6456 21 6 4.0321 2.1067 -1.1565 22 7 3.5135 1.4575 0.0613 23 6 4.2739 0.9525 1.0821 24 1 3.8073 0.6701 2.0144 25 6 5.6443 0.8038 0.9188 26 7 6.2128 1.1476 -0.2174 27 14 6.6817 0.1156 2.3116 28 1 5.8094 -0.1907 3.4737 29 1 7.3575 -1.1266 1.8583 30 1 7.7027 1.1175 2.7100 31 1 -0.3633 0.5968 0.8366 32 1 -0.3634 0.4262 -0.9351 33 1 -0.3633 -1.0228 0.0985 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.2300 3.3010 -0.2228 37 1 -0.4405 6.0176 -2.0613 38 1 -2.0031 6.1466 -1.2182 39 1 -0.6205 5.3653 -0.4150 40 1 -3.6094 2.8501 -3.5270 41 1 -4.1430 4.1548 -2.4465 42 1 -5.2510 4.1545 -4.7312 43 1 -4.4298 5.6780 -4.3095 44 1 -3.1334 3.4345 -5.9294 45 1 -3.9212 4.8581 -6.6575 46 1 -1.3933 5.0624 -6.3320 47 1 -2.3606 6.3643 -5.6007 48 1 2.9493 3.1969 -2.7176 49 1 2.8530 3.9520 -1.0916 50 1 4.2731 1.3586 -1.9119 51 1 4.9119 2.7064 -0.9233 52 1 7.1704 1.0433 -0.3316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087838873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:59 Heat of formation + Delta-G solvation = -71.372721 kcal Electronic energy + Delta-G solvation = -31386.722420 eV Core-core repulsion = 27385.695349 eV Total energy + Delta-G solvation = -4001.027071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.02074 -40.58054 -39.06616 -37.38571 -35.63044 -35.57660 -34.28429 -33.50701 -31.69319 -30.68529 -30.30990 -28.11668 -26.53020 -25.65719 -25.10374 -23.88324 -23.07823 -22.18250 -21.50423 -21.04120 -19.47969 -18.76936 -18.25189 -17.94406 -17.26875 -16.81099 -16.51843 -16.33306 -15.90968 -15.67391 -15.42447 -15.33421 -15.20840 -14.83336 -14.59666 -14.45489 -14.26951 -14.11236 -13.81789 -13.57743 -13.28434 -13.22736 -13.15266 -12.95570 -12.89563 -12.72382 -12.58532 -12.44861 -12.22698 -12.08007 -12.03419 -11.96712 -11.89486 -11.81784 -11.77135 -11.57379 -11.38023 -10.81566 -10.69906 -10.45364 -9.94329 -9.63790 -8.87288 -7.84324 -5.23345 1.46374 1.47513 1.57778 1.63084 1.76554 1.99950 2.32914 2.52534 3.34370 3.50789 3.66014 3.82904 3.84485 3.88051 3.91510 3.93631 3.98259 4.07877 4.16444 4.17559 4.35103 4.39209 4.52567 4.53543 4.59863 4.62746 4.63970 4.71182 4.74643 4.82614 4.88437 4.92549 4.95522 4.98556 5.11924 5.13939 5.15666 5.19216 5.27190 5.32104 5.39793 5.45813 5.49410 5.51875 5.54339 5.67757 5.69621 6.21285 6.55398 6.64550 7.07136 7.28688 7.41731 7.75125 8.42499 9.26324 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.002730 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.438333 B =10255.743662 C =10718.588190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 C 0.160 3.840 4 H 0.057 0.943 5 C 0.163 3.837 6 H 0.068 0.932 7 N -0.702 5.702 8 C 0.506 3.494 9 O -0.571 6.571 10 C 0.127 3.873 11 H 0.154 0.846 12 C -0.159 4.159 13 N -0.590 5.590 14 C 0.104 3.896 15 C -0.127 4.127 16 C -0.120 4.120 17 C -0.131 4.131 18 C 0.509 3.491 19 O -0.587 6.587 20 C -0.140 4.140 21 C 0.184 3.816 22 N -0.614 5.614 23 C -0.228 4.228 24 H 0.087 0.913 25 C -0.069 4.069 26 N -0.953 5.953 27 Si 0.978 3.022 28 H -0.260 1.260 29 H -0.296 1.296 30 H -0.294 1.294 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.412 0.588 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.113 0.887 48 H 0.050 0.950 49 H 0.068 0.932 50 H -0.012 1.012 51 H 0.045 0.955 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.218 8.393 -3.971 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.165 4.165 3 C 0.054 3.946 4 H 0.075 0.925 5 C 0.057 3.943 6 H 0.086 0.914 7 N -0.355 5.355 8 C 0.292 3.708 9 O -0.449 6.449 10 C 0.020 3.980 11 H 0.171 0.829 12 C -0.217 4.217 13 N -0.322 5.322 14 C -0.018 4.018 15 C -0.164 4.164 16 C -0.157 4.157 17 C -0.170 4.170 18 C 0.299 3.701 19 O -0.467 6.467 20 C -0.180 4.180 21 C 0.058 3.942 22 N -0.339 5.339 23 C -0.357 4.357 24 H 0.105 0.895 25 C -0.261 4.261 26 N -0.602 5.602 27 Si 0.807 3.193 28 H -0.184 1.184 29 H -0.224 1.224 30 H -0.221 1.221 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.249 0.751 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.131 0.869 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.006 0.994 51 H 0.064 0.936 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -28.275 8.216 -4.631 29.807 hybrid contribution 1.759 -0.514 0.472 1.892 sum -26.517 7.703 -4.159 27.924 Atomic orbital electron populations 1.21634 0.93458 1.02064 1.01781 1.21888 0.96848 0.97319 1.00486 1.21345 0.84152 0.94685 0.94452 0.92506 1.21513 0.84083 0.91663 0.97054 0.91357 1.45754 1.26147 1.52315 1.11281 1.21460 0.85283 0.80041 0.84029 1.90666 1.73380 1.55251 1.25621 1.21129 0.92642 0.96871 0.87401 0.82902 1.22113 1.03305 0.95055 1.01240 1.47234 1.14684 1.58538 1.11778 1.21799 0.79113 0.99043 1.01807 1.21881 0.99479 1.02370 0.92698 1.21661 0.94232 0.99719 1.00130 1.21660 0.99538 1.03559 0.92289 1.20698 0.85566 0.76539 0.87263 1.90695 1.19420 1.54548 1.82023 1.23174 0.96536 0.98741 0.99541 1.21117 0.93870 0.92207 0.87010 1.44821 1.00648 1.68329 1.20058 1.19405 0.89481 1.34065 0.92748 0.89497 1.25741 0.98467 1.02371 0.99564 1.70180 1.09703 1.54481 1.25885 0.85008 0.78554 0.77019 0.78750 1.18426 1.22360 1.22118 0.90985 0.93534 0.92111 0.95028 0.92896 0.75079 0.93342 0.89101 0.89744 0.91958 0.87450 0.87095 0.89967 0.92438 0.88363 0.89951 0.86932 0.93128 0.91343 0.99426 0.93620 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.57 71.98 0.69 -2.79 16 2 C -0.13 -4.63 5.42 30.60 0.17 -4.47 16 3 C 0.16 6.40 2.96 45.25 0.13 6.53 16 4 H 0.06 2.07 7.70 -2.39 -0.02 2.05 16 5 C 0.16 6.25 1.95 46.18 0.09 6.34 16 6 H 0.07 2.95 7.26 -2.39 -0.02 2.94 16 7 N -0.70 -20.40 4.79 -436.92 -2.09 -22.49 16 8 C 0.51 15.46 6.38 87.66 0.56 16.02 16 9 O -0.57 -23.47 14.13 17.80 0.25 -23.21 16 10 C 0.13 2.53 3.02 44.25 0.13 2.66 16 11 H 0.15 1.65 7.79 -2.39 -0.02 1.63 16 12 C -0.16 -2.98 8.97 71.98 0.65 -2.34 16 13 N -0.59 -11.67 2.61 -806.83 -2.10 -13.78 16 14 C 0.10 1.04 6.25 86.49 0.54 1.59 16 15 C -0.13 -0.82 6.02 30.69 0.18 -0.64 16 16 C -0.12 -1.32 6.04 30.74 0.19 -1.13 16 17 C -0.13 -2.38 6.03 29.70 0.18 -2.20 16 18 C 0.51 13.51 6.20 87.71 0.54 14.05 16 19 O -0.59 -21.95 12.77 17.83 0.23 -21.72 16 20 C -0.14 -6.23 6.77 31.99 0.22 -6.01 16 21 C 0.18 9.85 5.46 86.85 0.47 10.33 16 22 N -0.61 -31.75 3.14 -667.17 -2.10 -33.85 16 23 C -0.23 -12.64 9.80 84.03 0.82 -11.82 16 24 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 25 C -0.07 -3.95 5.47 84.86 0.46 -3.49 16 26 N -0.95 -59.11 10.47 21.65 0.23 -58.88 16 27 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 28 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 30 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.26 7.37 -2.38 -0.02 1.24 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 35 H 0.05 2.05 7.93 -2.39 -0.02 2.04 16 36 H 0.41 9.10 7.76 -92.70 -0.72 8.38 16 37 H 0.05 1.34 5.99 -2.39 -0.01 1.33 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.31 7.56 -2.39 -0.02 1.29 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.11 0.43 8.03 -2.39 -0.02 0.41 16 42 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.08 0.43 8.13 -2.39 -0.02 0.41 16 44 H 0.06 0.81 8.13 -2.39 -0.02 0.80 16 45 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 49 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 50 H -0.01 -0.73 8.12 -2.38 -0.02 -0.75 16 51 H 0.05 2.72 6.72 -2.39 -0.02 2.71 16 52 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -84.55 399.22 2.65 -81.90 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.18 Total: 21.18 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 6.03 Total: 22.63 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -6.07 Total: -129.00 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: 0.48 Total: -44.94 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -84.55 2.65 -81.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087838873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.528 kcal (2) G-P(sol) polarization free energy of solvation -84.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds