Wall clock time and date at job start Tue Mar 31 2020 19:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47238 * 2 1 4 4 C 1.50697 * 109.47619 * 120.00309 * 2 1 3 5 5 O 1.21279 * 120.00117 * 265.00787 * 4 2 1 6 6 N 1.34783 * 120.00026 * 84.99632 * 4 2 1 7 7 C 1.46498 * 119.99872 * 180.02562 * 6 4 2 8 8 H 1.09001 * 110.56007 * 18.40750 * 7 6 4 9 9 C 1.54854 * 110.62576 * 141.31024 * 7 6 4 10 10 C 1.56220 * 103.27000 * 118.68309 * 9 7 6 11 11 H 1.08997 * 115.55521 * 158.75339 * 10 9 7 12 12 C 1.55848 * 105.67782 * 287.87412 * 10 9 7 13 13 C 1.57715 * 103.12189 * 70.96969 * 12 10 9 14 14 C 1.55844 * 102.67801 * 1.20131 * 13 12 10 15 15 H 1.09005 * 115.55855 * 158.49822 * 14 13 12 16 16 N 1.50236 * 101.11807 * 32.83403 * 10 9 7 17 17 C 1.36932 * 130.84143 * 126.06583 * 16 10 9 18 18 H 1.08000 * 120.00578 * 180.02562 * 17 16 10 19 19 C 1.38813 * 119.99982 * 0.02562 * 17 16 10 20 20 N 1.31623 * 119.99673 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00360 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46742 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46836 * 120.00362 * 21 19 17 24 24 H 1.48496 * 109.47202 * 240.00569 * 21 19 17 25 25 N 1.46907 * 109.46832 * 240.00263 * 2 1 3 26 26 C 1.47014 * 110.99519 * 183.63267 * 25 2 1 27 27 C 1.53103 * 109.25618 * 177.60774 * 26 25 2 28 28 O 1.43018 * 109.25638 * 56.84553 * 27 26 25 29 29 C 1.43014 * 113.74477 * 301.33252 * 28 27 26 30 30 C 1.47011 * 110.99728 * 60.00026 * 25 2 1 31 31 H 1.08996 * 109.47178 * 299.99539 * 1 2 3 32 32 H 1.08994 * 109.47538 * 59.99424 * 1 2 3 33 33 H 1.09003 * 109.47142 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47490 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47326 * 300.00706 * 3 2 1 36 36 H 1.09005 * 109.46615 * 59.99915 * 3 2 1 37 37 H 0.96994 * 119.99529 * 0.02562 * 6 4 2 38 38 H 1.09001 * 110.62312 * 237.13925 * 9 7 6 39 39 H 1.08998 * 110.62581 * 0.15492 * 9 7 6 40 40 H 1.08993 * 110.62196 * 190.55352 * 12 10 9 41 41 H 1.08999 * 110.62567 * 313.42376 * 12 10 9 42 42 H 1.09004 * 111.90625 * 242.53809 * 13 12 10 43 43 H 1.09002 * 110.07014 * 119.01530 * 13 12 10 44 44 H 0.97005 * 119.99640 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.50844 * 297.54039 * 26 25 2 46 46 H 1.09001 * 109.50953 * 57.67472 * 26 25 2 47 47 H 1.09000 * 109.50379 * 296.91998 * 27 26 25 48 48 H 1.09000 * 109.54470 * 176.80349 * 27 26 25 49 49 H 1.08994 * 109.50440 * 298.74115 * 29 28 27 50 50 H 1.08996 * 109.54603 * 178.62376 * 29 28 27 51 51 H 1.09001 * 109.50865 * 302.32303 * 30 25 2 52 52 H 1.08998 * 109.51277 * 62.41578 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3208 -0.0750 2.2223 6 7 2.1611 -2.0521 1.2285 7 6 2.6491 -2.7428 2.4248 8 1 2.5532 -2.1029 3.3020 9 6 1.8870 -4.0743 2.6349 10 6 3.0150 -5.1513 2.5441 11 1 2.7876 -6.1107 3.0087 12 6 3.4199 -5.2114 1.0404 13 6 4.1736 -3.8440 0.8176 14 6 4.1284 -3.1939 2.2333 15 1 4.8817 -2.4294 2.4239 16 7 4.1792 -4.4010 3.1262 17 6 5.0259 -4.7194 4.1543 18 1 5.8178 -4.0394 4.4320 19 6 4.8665 -5.9160 4.8395 20 7 3.9019 -6.7449 4.5007 21 14 6.0211 -6.3500 6.2424 22 1 7.0119 -5.2588 6.4236 23 1 5.2384 -6.5201 7.4929 24 1 6.7303 -7.6157 5.9262 25 7 2.0196 -0.6925 -1.1995 26 6 3.4866 -0.7878 -1.1908 27 6 3.9494 -1.5666 -2.4251 28 8 3.4556 -0.9215 -3.6022 29 6 2.0303 -0.8121 -3.6440 30 6 1.5482 -0.0257 -2.4220 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.9307 -2.5602 0.4351 38 1 1.4132 -4.0948 3.6163 39 1 1.1479 -4.2221 1.8475 40 1 4.0700 -6.0656 0.8517 41 1 2.5347 -5.2562 0.4059 42 1 3.6646 -3.2131 0.0889 43 1 5.2036 -4.0299 0.5131 44 1 3.7907 -7.5813 4.9793 45 1 3.9166 0.2136 -1.2099 46 1 3.8123 -1.3073 -0.2895 47 1 3.5631 -2.5848 -2.3789 48 1 5.0387 -1.5913 -2.4534 49 1 1.5883 -1.8083 -3.6332 50 1 1.7311 -0.2909 -4.5534 51 1 0.4588 0.0111 -2.4196 52 1 1.9465 0.9881 -2.4605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096175318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:49 Heat of formation + Delta-G solvation = -35.251207 kcal Electronic energy + Delta-G solvation = -32452.430132 eV Core-core repulsion = 28452.969407 eV Total energy + Delta-G solvation = -3999.460725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.02702 -40.69424 -39.64577 -37.40745 -35.47097 -34.12257 -32.98636 -32.15486 -30.91197 -30.64220 -29.32885 -28.34130 -27.52313 -26.21631 -25.20609 -23.87943 -22.78899 -21.77467 -21.33322 -20.27520 -20.08048 -18.96607 -18.57494 -17.26242 -17.01880 -16.92455 -16.80257 -16.17482 -16.03887 -15.94587 -15.67099 -15.50203 -15.30971 -15.21236 -14.92365 -14.16358 -13.95662 -13.69543 -13.57821 -13.37618 -13.22644 -13.13101 -12.99724 -12.85311 -12.80840 -12.79235 -12.57754 -12.43139 -12.42171 -12.27088 -12.00457 -11.97864 -11.86676 -11.56577 -11.38485 -11.16168 -11.03121 -10.77085 -10.73248 -10.57586 -9.94985 -9.46391 -8.85167 -7.79380 -5.18776 1.45627 1.46641 1.55952 1.57927 2.18464 2.50253 2.60066 3.01405 3.34054 3.46395 3.59609 3.85652 3.91714 3.95975 4.01404 4.05686 4.11983 4.17002 4.17375 4.32057 4.36341 4.39745 4.48895 4.55943 4.59247 4.65561 4.66033 4.70960 4.72340 4.78739 4.82388 4.86796 4.90849 4.94230 4.98711 5.06188 5.08359 5.14989 5.17119 5.25348 5.26387 5.34499 5.46851 5.54738 5.72859 5.78743 5.88807 5.88966 6.25159 6.27824 6.66081 7.05539 7.30965 7.69319 8.55243 9.27339 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.003428 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.051304 B = 8165.940920 C = 8760.170161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.099 3.901 3 C -0.163 4.163 4 C 0.520 3.480 5 O -0.590 6.590 6 N -0.686 5.686 7 C 0.139 3.861 8 H 0.055 0.945 9 C -0.128 4.128 10 C 0.139 3.861 11 H 0.118 0.882 12 C -0.123 4.123 13 C -0.117 4.117 14 C 0.120 3.880 15 H 0.068 0.932 16 N -0.616 5.616 17 C -0.223 4.223 18 H 0.072 0.928 19 C -0.062 4.062 20 N -0.943 5.943 21 Si 0.974 3.026 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.291 1.291 25 N -0.518 5.518 26 C 0.004 3.996 27 C 0.069 3.931 28 O -0.403 6.403 29 C 0.060 3.940 30 C 0.013 3.987 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.248 0.752 45 H 0.041 0.959 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.102 0.898 49 H 0.066 0.934 50 H 0.117 0.883 51 H 0.114 0.886 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 12.620 -19.412 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.006 3.994 3 C -0.222 4.222 4 C 0.307 3.693 5 O -0.469 6.469 6 N -0.338 5.338 7 C 0.031 3.969 8 H 0.073 0.927 9 C -0.168 4.168 10 C 0.033 3.967 11 H 0.135 0.865 12 C -0.163 4.163 13 C -0.156 4.156 14 C 0.012 3.988 15 H 0.086 0.914 16 N -0.338 5.338 17 C -0.352 4.352 18 H 0.090 0.910 19 C -0.255 4.255 20 N -0.593 5.593 21 Si 0.803 3.197 22 H -0.199 1.199 23 H -0.221 1.221 24 H -0.218 1.218 25 N -0.245 5.245 26 C -0.124 4.124 27 C -0.008 4.008 28 O -0.322 6.322 29 C -0.016 4.016 30 C -0.114 4.114 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.120 0.880 49 H 0.084 0.916 50 H 0.135 0.865 51 H 0.132 0.868 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.691 12.457 -18.607 24.019 hybrid contribution 1.034 0.139 1.469 1.802 sum -7.657 12.596 -17.138 22.606 Atomic orbital electron populations 1.21867 0.89439 1.04028 1.03837 1.21245 0.98418 0.92417 0.87319 1.22234 1.01040 0.95392 1.03563 1.20934 0.76377 0.82673 0.89335 1.90692 1.52144 1.67103 1.36983 1.46049 1.64937 1.06559 1.16260 1.22170 0.94826 0.92572 0.87296 0.92667 1.23195 0.98048 0.95002 1.00521 1.23707 0.85135 0.96518 0.91316 0.86454 1.23369 0.99467 0.96110 0.97317 1.23376 0.99834 0.96369 0.96014 1.23289 0.94263 0.89517 0.91742 0.91423 1.46691 1.33515 1.18112 1.35464 1.19331 1.07248 1.01878 1.06759 0.91028 1.25388 1.00695 0.97101 1.02310 1.69686 1.34392 1.11446 1.43761 0.85062 0.78140 0.77544 0.78905 1.19873 1.22089 1.21760 1.62501 1.09436 1.51003 1.01514 1.22989 0.88388 1.00485 1.00562 1.22650 0.99825 0.95622 0.82670 1.87971 1.22670 1.80225 1.41323 1.22864 0.80132 1.00737 0.97914 1.23025 1.02835 0.96734 0.88853 0.92119 0.88439 0.90723 0.93585 0.89152 0.91971 0.74441 0.94109 0.89175 0.94227 0.89993 0.89042 0.93362 0.94196 0.94085 0.90264 0.91430 0.88001 0.91594 0.86533 0.86778 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.23 71.98 0.59 -1.42 16 2 C 0.10 1.95 0.64 2.78 0.00 1.95 16 3 C -0.16 -3.24 7.31 71.98 0.53 -2.71 16 4 C 0.52 15.11 5.41 87.65 0.47 15.58 16 5 O -0.59 -22.77 15.56 -3.03 -0.05 -22.81 16 6 N -0.69 -19.25 3.00 -434.91 -1.30 -20.55 16 7 C 0.14 5.16 3.35 46.61 0.16 5.32 16 8 H 0.05 2.45 7.19 -2.39 -0.02 2.43 16 9 C -0.13 -4.84 6.25 32.35 0.20 -4.64 16 10 C 0.14 6.24 4.68 46.36 0.22 6.45 16 11 H 0.12 6.20 5.52 -2.39 -0.01 6.19 16 12 C -0.12 -4.44 6.58 33.25 0.22 -4.22 16 13 C -0.12 -3.85 6.42 33.25 0.21 -3.64 16 14 C 0.12 4.90 5.30 46.23 0.25 5.15 16 15 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 16 N -0.62 -30.96 2.99 -614.54 -1.84 -32.79 16 17 C -0.22 -12.59 10.59 84.03 0.89 -11.70 16 18 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 19 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 20 N -0.94 -54.86 10.47 21.65 0.23 -54.63 16 21 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 N -0.52 -8.49 3.83 -849.90 -3.25 -11.74 16 26 C 0.00 0.08 4.77 86.32 0.41 0.49 16 27 C 0.07 1.21 7.01 72.02 0.50 1.72 16 28 O -0.40 -7.34 10.83 -148.98 -1.61 -8.95 16 29 C 0.06 0.72 7.01 72.02 0.50 1.22 16 30 C 0.01 0.15 4.87 86.32 0.42 0.57 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.90 6.35 -2.39 -0.02 0.88 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.05 6.54 -2.39 -0.02 1.04 16 35 H 0.09 1.28 6.46 -2.39 -0.02 1.27 16 36 H 0.06 1.41 7.87 -2.38 -0.02 1.39 16 37 H 0.42 9.73 6.78 -92.71 -0.63 9.10 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 2.74 7.61 -2.39 -0.02 2.72 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 2.33 7.86 -2.39 -0.02 2.31 16 42 H 0.09 2.38 4.39 -2.39 -0.01 2.36 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 45 H 0.04 0.87 6.52 -2.39 -0.02 0.85 16 46 H 0.08 1.86 4.68 -2.39 -0.01 1.85 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.11 0.84 6.19 -2.39 -0.01 0.82 16 52 H 0.05 0.61 6.44 -2.39 -0.02 0.59 16 Total: -1.00 -69.45 379.40 0.55 -68.90 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.30 Total: 27.20 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 6.04 Total: 7.08 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -6.16 Total: -119.71 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.66 Total: -31.77 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -69.45 0.55 -68.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096175318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.650 kcal (2) G-P(sol) polarization free energy of solvation -69.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds