Wall clock time and date at job start Tue Mar 31 2020 20:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99986 * 2 1 4 4 H 1.08997 * 109.46903 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47175 * 240.00039 * 3 2 1 6 6 C 1.53000 * 109.46733 * 65.00535 * 5 3 2 7 7 C 1.53002 * 109.46546 * 120.00503 * 3 2 1 8 8 C 1.50696 * 109.47303 * 295.00022 * 7 3 2 9 9 O 1.21284 * 120.00109 * 0.02562 * 8 7 3 10 10 N 1.34777 * 120.00137 * 180.02562 * 8 7 3 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47035 * 179.97438 * 11 10 8 13 13 C 1.53784 * 113.61168 * 274.13488 * 12 11 10 14 14 C 1.53951 * 87.01629 * 220.04779 * 13 12 11 15 15 N 1.46908 * 113.74119 * 139.94548 * 14 13 12 16 16 C 1.46898 * 110.99779 * 107.39915 * 15 14 13 17 17 C 1.50700 * 109.47124 * 179.97438 * 16 15 14 18 18 O 1.21290 * 119.99536 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00593 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00598 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99588 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00134 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00203 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99731 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47128 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46872 * 120.00136 * 24 22 20 27 27 H 1.48499 * 109.46804 * 239.99941 * 24 22 20 28 28 C 1.53772 * 87.11347 * 25.36206 * 14 13 12 29 29 H 1.07994 * 119.99835 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99956 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.99559 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47200 * 185.00099 * 5 3 2 33 33 H 1.08996 * 109.47278 * 305.00208 * 5 3 2 34 34 H 1.08998 * 109.47159 * 299.99258 * 6 5 3 35 35 H 1.09004 * 109.47397 * 60.00122 * 6 5 3 36 36 H 1.09007 * 109.46821 * 179.97438 * 6 5 3 37 37 H 1.09000 * 109.46986 * 175.00171 * 7 3 2 38 38 H 1.08996 * 109.47407 * 55.00399 * 7 3 2 39 39 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 41 41 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 42 42 H 1.08999 * 112.84703 * 45.32647 * 12 11 10 43 43 H 1.08998 * 113.61528 * 334.56969 * 13 12 11 44 44 H 1.09002 * 113.61529 * 105.47075 * 13 12 11 45 45 H 1.09001 * 113.53832 * 270.80886 * 14 13 12 46 46 H 1.00897 * 110.99577 * 343.44633 * 15 14 13 47 47 H 1.08991 * 109.47677 * 300.00265 * 16 15 14 48 48 H 1.09003 * 109.47230 * 60.00253 * 16 15 14 49 49 H 0.97009 * 119.99709 * 359.97438 * 19 17 16 50 50 H 0.97002 * 119.99983 * 180.02562 * 23 22 20 51 51 H 1.09001 * 113.61872 * 220.08438 * 28 14 13 52 52 H 1.09004 * 113.61309 * 89.18616 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0563 1.4308 -2.4952 7 6 2.9432 1.3859 1.2492 8 6 2.0699 1.4297 2.4766 9 8 0.8628 1.3988 2.3634 10 7 2.6303 1.5033 3.7001 11 6 1.7813 1.5452 4.8934 12 6 2.6610 1.6262 6.1426 13 6 3.1276 0.2543 6.6574 14 6 2.8802 0.7930 8.0781 15 7 2.2743 -0.1900 8.9863 16 6 3.2517 -0.6669 9.9737 17 6 2.5953 -1.6708 10.8860 18 8 1.4281 -1.9609 10.7286 19 7 3.3050 -2.2464 11.8766 20 6 2.7079 -3.1601 12.7062 21 1 1.6686 -3.4184 12.5661 22 6 3.4399 -3.7539 13.7272 23 7 4.7042 -3.4393 13.8980 24 14 2.6264 -4.9994 14.8570 25 1 1.2075 -5.1780 14.4570 26 1 3.3367 -6.2994 14.7537 27 1 2.6886 -4.5113 16.2581 28 6 1.8631 1.7605 7.4503 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.5540 2.2878 -1.2056 33 1 3.5906 0.5105 -1.2952 34 1 1.4455 0.5292 -2.5390 35 1 1.4089 2.3066 -2.4493 36 1 2.6830 1.4891 -3.3853 37 1 3.5541 2.2876 1.2057 38 1 3.5907 0.5103 1.2950 39 1 3.5958 1.5276 3.7907 40 1 1.1333 2.4205 4.8476 41 1 1.1710 0.6432 4.9370 42 1 3.4670 2.3536 6.0462 43 1 2.4646 -0.5650 6.3794 44 1 4.1757 0.0421 6.4462 45 1 3.7470 1.2917 8.5117 46 1 1.8754 -0.9604 8.4710 47 1 4.0892 -1.1369 9.4583 48 1 3.6142 0.1758 10.5624 49 1 4.2386 -2.0147 12.0022 50 1 5.2153 -3.8541 14.6105 51 1 1.8916 2.7625 7.8783 52 1 0.8536 1.3537 7.3895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100595510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:52 Heat of formation + Delta-G solvation = -53.634857 kcal Electronic energy + Delta-G solvation = -27884.122330 eV Core-core repulsion = 23883.864430 eV Total energy + Delta-G solvation = -4000.257900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.28894 -39.36766 -38.06301 -37.08922 -35.00843 -34.03149 -33.18006 -32.04828 -31.21133 -30.91687 -28.21310 -26.35158 -25.76886 -24.81137 -23.93480 -22.01996 -21.57105 -20.86712 -19.93825 -19.73447 -19.05523 -17.86796 -17.24571 -16.46617 -16.05441 -16.00110 -15.61820 -15.26785 -15.03499 -14.79067 -14.51190 -14.39243 -14.29712 -13.92896 -13.82965 -13.66806 -13.31530 -13.04095 -12.58625 -12.53176 -12.52211 -12.35958 -12.19317 -11.79634 -11.67927 -11.56516 -11.54709 -11.51626 -11.19196 -11.08862 -11.02746 -10.82788 -10.64968 -10.47149 -10.34045 -10.21967 -10.05173 -9.51919 -9.39741 -9.21374 -8.44005 -8.01031 -7.94451 -6.41796 -3.82462 2.21000 2.46588 2.92616 3.16478 3.27057 3.34602 3.91282 4.10127 4.29509 4.30967 4.37783 4.41069 4.43250 4.52429 4.72165 4.84186 4.87549 4.87757 4.99998 5.02728 5.09101 5.12188 5.19345 5.27616 5.28241 5.31107 5.46546 5.50484 5.53099 5.58545 5.62460 5.68367 5.72603 5.74186 5.80717 5.85844 5.88665 5.93938 5.99039 6.05921 6.18134 6.25013 6.34915 6.51365 6.70115 7.25336 7.28709 7.55570 7.67942 8.02505 8.06964 8.61548 9.18279 9.54635 10.06184 10.76049 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.001441 C = 0.001412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.777392 B =19423.117826 C =19818.968553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.135 4.135 8 C 0.508 3.492 9 O -0.531 6.531 10 N -0.732 5.732 11 C 0.132 3.868 12 C -0.124 4.124 13 C -0.165 4.165 14 C 0.069 3.931 15 N -0.657 5.657 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.116 4.116 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.399 0.601 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.351 0.649 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.070 0.930 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 12.965 -28.305 31.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.175 4.175 8 C 0.294 3.706 9 O -0.407 6.407 10 N -0.384 5.384 11 C 0.008 3.992 12 C -0.144 4.144 13 C -0.204 4.204 14 C -0.043 4.043 15 N -0.288 5.288 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.155 4.155 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.232 0.768 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.113 0.887 46 H 0.172 0.828 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.089 0.911 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.176 13.126 -27.892 30.849 hybrid contribution 1.451 -1.103 0.366 1.858 sum 2.627 12.023 -27.526 30.152 Atomic orbital electron populations 1.23714 0.95941 1.01373 0.98845 1.22620 0.96003 0.97022 1.01644 1.20153 0.96541 0.97149 0.92438 0.90107 1.21542 0.97859 1.01938 0.94041 1.21761 0.99841 1.02189 0.97098 1.21727 0.98733 1.04271 0.92800 1.20694 0.89279 0.76017 0.84603 1.90727 1.14811 1.48575 1.86616 1.46082 1.10405 1.75915 1.06037 1.21354 0.92891 1.02318 0.82601 1.22658 0.99215 0.98560 0.93930 1.23862 1.01572 0.96740 0.98225 1.23022 0.96751 0.94671 0.89815 1.60018 1.32657 1.18710 1.17436 1.21711 0.93563 0.98291 0.94675 1.19855 0.87780 0.85471 0.84359 1.90526 1.16772 1.65811 1.73623 1.41874 1.12921 1.37902 1.27406 1.19765 0.97679 1.16953 1.08448 0.87870 1.25254 0.95532 0.98896 0.98248 1.69619 1.07576 1.43985 1.33194 0.85805 0.79418 0.79681 0.79478 1.19201 1.20790 1.20735 1.23048 0.99421 0.99928 0.93137 0.89158 0.88655 0.88098 0.91851 0.91808 0.92345 0.92811 0.92890 0.88874 0.88876 0.76764 0.91501 0.91293 0.88802 0.89638 0.91588 0.88682 0.82796 0.93893 0.89659 0.77485 0.91949 0.91112 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 13.22 29.01 0.38 -1.11 16 2 C -0.15 -1.28 6.76 -36.03 -0.24 -1.52 16 3 C -0.04 -0.30 1.82 -91.77 -0.17 -0.47 16 4 H 0.08 0.68 7.60 -51.93 -0.39 0.28 16 5 C -0.12 -0.60 5.39 -26.73 -0.14 -0.74 16 6 C -0.15 -0.82 9.73 37.16 0.36 -0.46 16 7 C -0.14 -0.79 5.16 -27.88 -0.14 -0.94 16 8 C 0.51 4.63 7.58 -10.99 -0.08 4.55 16 9 O -0.53 -6.91 14.17 5.55 0.08 -6.84 16 10 N -0.73 -5.47 5.56 -60.29 -0.33 -5.81 16 11 C 0.13 1.17 5.50 -4.04 -0.02 1.15 16 12 C -0.12 -0.98 3.75 -89.81 -0.34 -1.32 16 13 C -0.16 -1.54 7.27 -25.83 -0.19 -1.73 16 14 C 0.07 0.78 4.18 -66.81 -0.28 0.51 16 15 N -0.66 -10.42 6.24 -107.04 -0.67 -11.09 16 16 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 17 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 18 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 19 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C -0.12 -1.17 7.44 -25.93 -0.19 -1.36 16 29 H 0.09 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.10 0.93 7.83 -52.49 -0.41 0.52 16 31 H 0.10 0.77 8.06 -52.48 -0.42 0.34 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.35 7.38 -51.93 -0.38 -0.03 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.25 8.14 -51.92 -0.42 -0.18 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.40 1.95 8.47 -40.82 -0.35 1.60 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.89 7.61 -51.93 -0.40 0.50 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 1.01 7.87 -51.93 -0.41 0.61 16 46 H 0.35 5.83 7.91 -39.29 -0.31 5.52 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 49 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 52 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 425.57 15.07 6.41 6.41 Total: -1.00 -33.29 425.57 -9.42 -42.71 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -9.23 Total: 12.95 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.41 Total: -0.29 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.34 Total: -55.13 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.17 Total: -22.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -33.29 -9.42 -42.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100595510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.924 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds