Wall clock time and date at job start Tue Mar 31 2020 20:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47216 * 2 1 4 4 H 1.08996 * 109.46887 * 304.99445 * 3 2 1 5 5 C 1.53002 * 109.47082 * 64.99720 * 3 2 1 6 6 C 1.50701 * 109.47093 * 184.99550 * 3 2 1 7 7 O 1.21279 * 119.99849 * 325.11507 * 6 3 2 8 8 N 1.34780 * 119.99791 * 145.39064 * 6 3 2 9 9 C 1.47198 * 126.70433 * 4.51411 * 8 6 3 10 10 C 1.54060 * 106.25232 * 148.61568 * 9 8 6 11 11 H 1.08997 * 111.89652 * 141.15419 * 10 9 8 12 12 C 1.54303 * 109.26784 * 266.91901 * 10 9 8 13 13 N 1.48524 * 104.68836 * 136.34512 * 12 10 9 14 14 C 1.46901 * 110.99765 * 200.77309 * 13 12 10 15 15 C 1.50706 * 109.47087 * 290.12117 * 14 13 12 16 16 O 1.21287 * 119.99517 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99778 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99593 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99987 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99791 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00282 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99813 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47191 * 90.00613 * 22 20 18 24 24 H 1.48504 * 109.47142 * 210.00214 * 22 20 18 25 25 H 1.48495 * 109.46910 * 329.99955 * 22 20 18 26 26 C 1.50363 * 104.82068 * 320.80407 * 13 12 10 27 27 C 1.54301 * 103.80862 * 38.62104 * 26 13 12 28 28 C 1.52997 * 112.04812 * 99.65751 * 27 26 13 29 29 C 1.47201 * 126.70315 * 184.83431 * 8 6 3 30 30 H 1.09006 * 109.46970 * 60.00103 * 1 2 3 31 31 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47392 * 300.00387 * 1 2 3 33 33 H 1.09001 * 109.47392 * 239.99613 * 2 1 3 34 34 H 1.09006 * 109.46970 * 119.99897 * 2 1 3 35 35 H 1.09001 * 109.47215 * 64.65160 * 5 3 2 36 36 H 1.09001 * 109.46841 * 184.65691 * 5 3 2 37 37 H 1.08995 * 109.47127 * 304.65216 * 5 3 2 38 38 H 1.09001 * 110.07534 * 267.93939 * 9 8 6 39 39 H 1.09004 * 110.06737 * 29.46516 * 9 8 6 40 40 H 1.09008 * 110.39143 * 255.14283 * 12 10 9 41 41 H 1.08997 * 110.39783 * 17.42338 * 12 10 9 42 42 H 1.09001 * 109.47512 * 50.12286 * 14 13 12 43 43 H 1.09005 * 109.47244 * 170.12354 * 14 13 12 44 44 H 0.96999 * 120.00270 * 0.02562 * 17 15 14 45 45 H 0.96998 * 120.00247 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.29252 * 280.35522 * 26 13 12 47 47 H 1.09001 * 111.33482 * 157.38497 * 26 13 12 48 48 H 1.09003 * 109.46760 * 181.97748 * 28 27 26 49 49 H 1.09002 * 109.46997 * 301.97208 * 28 27 26 50 50 H 1.08996 * 109.47337 * 61.97459 * 28 27 26 51 51 H 1.09005 * 110.06839 * 330.54172 * 29 8 6 52 52 H 1.09004 * 110.07393 * 92.00758 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1237 7 8 4.1945 0.5663 0.3999 8 7 4.1602 2.4246 -0.8116 9 6 3.5279 3.6074 -1.4181 10 6 4.5757 4.7353 -1.3573 11 1 4.5637 5.3501 -2.2573 12 6 4.3665 5.5557 -0.0674 13 7 5.7346 5.7659 0.4713 14 6 5.6926 6.0857 1.9045 15 6 5.1062 7.4608 2.0954 16 8 4.7572 8.1101 1.1323 17 7 4.9688 7.9684 3.3363 18 6 4.4358 9.2196 3.5099 19 1 4.1257 9.7982 2.6523 20 6 4.2935 9.7428 4.7892 21 7 4.6704 9.0385 5.8327 22 14 3.5667 11.4472 5.0257 23 1 2.0929 11.3406 5.1744 24 1 4.1437 12.0665 6.2459 25 1 3.8856 12.2895 3.8451 26 6 6.4479 4.4649 0.2276 27 6 5.9356 4.0177 -1.1575 28 6 6.9310 4.3468 -2.2717 29 6 5.5989 2.5182 -1.1088 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.1359 1.6380 2.1433 36 1 1.9257 3.1766 1.2731 37 1 0.5555 2.0525 1.4370 38 1 3.2591 3.3984 -2.4535 39 1 2.6411 3.8897 -0.8506 40 1 3.8978 6.5125 -0.2976 41 1 3.7581 4.9969 0.6437 42 1 5.0749 5.3521 2.4226 43 1 6.7034 6.0620 2.3118 44 1 5.2476 7.4489 4.1065 45 1 4.5714 9.4039 6.7258 46 1 6.1727 3.7345 0.9885 47 1 7.5289 4.6033 0.2062 48 1 6.5133 4.0459 -3.2326 49 1 7.1256 5.4193 -2.2800 50 1 7.8631 3.8098 -2.0966 51 1 6.1757 2.0306 -0.3228 52 1 5.8130 2.0545 -2.0718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101128691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:10 Heat of formation + Delta-G solvation = -95.502576 kcal Electronic energy + Delta-G solvation = -30756.992717 eV Core-core repulsion = 26754.919296 eV Total energy + Delta-G solvation = -4002.073420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99146 -40.47499 -39.72513 -36.84433 -36.42364 -35.85613 -33.91119 -33.27177 -32.09414 -30.76339 -29.16128 -27.87930 -27.03085 -26.71592 -25.90674 -24.22332 -22.34138 -22.18286 -21.09676 -20.36727 -19.82754 -19.73232 -18.26339 -17.77185 -17.04187 -16.78515 -16.60838 -16.33021 -16.24619 -16.01809 -15.58801 -15.46465 -15.10779 -14.88957 -14.66446 -14.39929 -14.14850 -13.88800 -13.85113 -13.57293 -13.46229 -13.36600 -13.08969 -12.99707 -12.95413 -12.87077 -12.69483 -12.57891 -12.47220 -12.41785 -12.25860 -12.11925 -11.83383 -11.72488 -11.65848 -11.61913 -11.55669 -11.45153 -10.78588 -10.33406 -10.02123 -9.80029 -9.37243 -8.46986 -5.96077 1.37435 1.41130 1.50315 1.54215 1.91879 2.03271 2.27395 2.73003 3.16771 3.21882 3.29450 3.46572 3.57602 3.70411 3.79786 3.93686 4.04368 4.11999 4.16330 4.23398 4.28998 4.31421 4.38693 4.44492 4.47629 4.54616 4.57349 4.59508 4.63445 4.64613 4.69263 4.77057 4.82668 4.90908 4.92797 4.96409 5.05013 5.10149 5.13484 5.14448 5.20791 5.27974 5.31941 5.40090 5.44887 5.49561 5.80219 5.85274 6.04301 6.45100 6.58962 7.05772 7.11757 7.54521 8.09714 8.70651 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.002937 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.055832 B = 9532.479805 C =11031.677565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.101 4.101 4 H 0.113 0.887 5 C -0.142 4.142 6 C 0.530 3.470 7 O -0.586 6.586 8 N -0.618 5.618 9 C 0.104 3.896 10 C -0.088 4.088 11 H 0.120 0.880 12 C 0.049 3.951 13 N -0.501 5.501 14 C 0.047 3.953 15 C 0.446 3.554 16 O -0.610 6.610 17 N -0.576 5.576 18 C -0.330 4.330 19 H 0.081 0.919 20 C -0.014 4.014 21 N -0.923 5.923 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.271 1.271 26 C 0.043 3.957 27 C -0.064 4.064 28 C -0.120 4.120 29 C 0.113 3.887 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.394 0.606 45 H 0.277 0.723 46 H 0.035 0.965 47 H 0.095 0.905 48 H 0.077 0.923 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.063 0.937 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 -16.860 -15.527 23.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.122 4.122 4 H 0.131 0.869 5 C -0.199 4.199 6 C 0.321 3.679 7 O -0.466 6.466 8 N -0.350 5.350 9 C -0.018 4.018 10 C -0.107 4.107 11 H 0.138 0.862 12 C -0.079 4.079 13 N -0.224 5.224 14 C -0.085 4.085 15 C 0.233 3.767 16 O -0.496 6.496 17 N -0.213 5.213 18 C -0.460 4.460 19 H 0.099 0.901 20 C -0.214 4.214 21 N -0.564 5.564 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.084 4.084 27 C -0.066 4.066 28 C -0.178 4.178 29 C -0.010 4.010 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.227 0.773 45 H 0.087 0.913 46 H 0.053 0.947 47 H 0.113 0.887 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.082 0.918 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.499 -16.464 -15.877 23.138 hybrid contribution -0.277 0.057 1.708 1.731 sum -3.777 -16.407 -14.169 22.005 Atomic orbital electron populations 1.21815 0.93318 1.02647 1.02820 1.21347 0.97311 0.93376 1.02166 1.21376 0.89287 0.99995 1.01552 0.86897 1.21782 1.03506 0.99609 0.95011 1.20966 0.91278 0.79684 0.76010 1.90665 1.68532 1.39060 1.48326 1.48654 1.09291 1.23363 1.53742 1.22414 0.96080 0.83230 1.00084 1.22852 0.93849 0.95570 0.98469 0.86227 1.23104 0.89913 0.99417 0.95432 1.65392 1.14318 1.30227 1.12511 1.21876 1.02053 0.93456 0.91118 1.20567 0.83670 0.89490 0.82982 1.90464 1.55415 1.63134 1.40549 1.41951 1.56017 1.16477 1.06896 1.19665 1.39078 0.93564 0.93674 0.90103 1.26064 0.97594 1.03515 0.94220 1.69683 1.47909 1.39656 0.99166 0.84918 0.78417 0.77050 0.77907 1.19532 1.19678 1.19604 1.23662 1.00062 0.88880 0.95832 1.21997 0.95826 0.93142 0.95602 1.21633 0.97709 1.02157 0.96290 1.22158 0.81505 0.95551 1.01754 0.91384 0.91782 0.91932 0.92046 0.92749 0.93646 0.92920 0.88819 0.87780 0.89692 0.91304 0.95303 0.92641 0.87771 0.77272 0.91348 0.94690 0.88674 0.90372 0.92272 0.91235 0.91798 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 71.98 0.70 -1.07 16 2 C -0.10 -1.77 4.98 30.59 0.15 -1.62 16 3 C -0.10 -1.82 2.13 -11.54 -0.02 -1.84 16 4 H 0.11 1.48 7.07 -2.39 -0.02 1.46 16 5 C -0.14 -2.67 9.03 71.98 0.65 -2.02 16 6 C 0.53 13.00 6.87 87.66 0.60 13.60 16 7 O -0.59 -19.15 16.58 -3.03 -0.05 -19.20 16 8 N -0.62 -12.84 3.32 -814.69 -2.70 -15.55 16 9 C 0.10 1.69 5.74 86.60 0.50 2.19 16 10 C -0.09 -1.78 3.71 -9.29 -0.03 -1.81 16 11 H 0.12 2.11 7.90 -2.39 -0.02 2.10 16 12 C 0.05 1.49 5.27 86.43 0.46 1.94 16 13 N -0.50 -16.37 5.05 -881.33 -4.45 -20.82 16 14 C 0.05 1.73 5.34 85.56 0.46 2.18 16 15 C 0.45 21.57 7.59 87.66 0.66 22.24 16 16 O -0.61 -33.43 14.41 -3.05 -0.04 -33.48 16 17 N -0.58 -30.13 5.29 -306.98 -1.62 -31.75 16 18 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 19 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 20 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 21 N -0.92 -50.50 13.05 21.66 0.28 -50.21 16 22 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.04 1.07 5.73 86.06 0.49 1.57 16 27 C -0.06 -1.24 1.06 -50.78 -0.05 -1.30 16 28 C -0.12 -1.81 8.52 71.98 0.61 -1.20 16 29 C 0.11 2.21 5.96 86.50 0.52 2.73 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.72 6.47 -2.39 -0.02 0.70 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.13 8.02 -2.38 -0.02 1.12 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 1.07 7.96 -2.39 -0.02 1.05 16 37 H 0.09 1.36 6.36 -2.39 -0.02 1.34 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.36 6.64 -2.38 -0.02 1.34 16 40 H 0.07 2.53 6.90 -2.38 -0.02 2.51 16 41 H 0.03 0.90 7.23 -2.39 -0.02 0.88 16 42 H 0.06 1.95 7.88 -2.39 -0.02 1.93 16 43 H 0.10 3.49 8.13 -2.38 -0.02 3.47 16 44 H 0.39 19.85 7.90 -92.71 -0.73 19.11 16 45 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.03 0.95 7.39 -2.39 -0.02 0.93 16 47 H 0.09 2.18 7.89 -2.39 -0.02 2.16 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.06 1.50 7.30 -2.38 -0.02 1.48 16 52 H 0.09 1.41 7.88 -2.38 -0.02 1.39 16 Total: -1.00 -72.93 404.88 0.58 -72.34 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: 0.18 Total: 36.37 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 6.97 Total: 17.24 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -8.49 Total: -118.33 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.09 Total: -52.68 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.93 0.58 -72.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101128691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.158 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds