Wall clock time and date at job start Tue Mar 31 2020 20:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08996 * 109.46884 * 55.00564 * 3 2 1 5 5 C 1.52997 * 109.47127 * 294.99812 * 3 2 1 6 6 C 1.50699 * 109.46866 * 175.00019 * 3 2 1 7 7 O 1.21282 * 120.00041 * 359.97438 * 6 3 2 8 8 N 1.34779 * 120.00037 * 180.02562 * 6 3 2 9 9 C 1.47198 * 126.70006 * 359.68206 * 8 6 3 10 10 C 1.54061 * 106.25084 * 148.62102 * 9 8 6 11 11 H 1.09004 * 111.89970 * 141.15327 * 10 9 8 12 12 C 1.54306 * 109.26592 * 266.91499 * 10 9 8 13 13 N 1.48528 * 104.69187 * 136.33989 * 12 10 9 14 14 C 1.46896 * 111.00053 * 200.77150 * 13 12 10 15 15 C 1.50701 * 109.47151 * 290.12805 * 14 13 12 16 16 O 1.21284 * 120.00132 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99826 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99998 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00014 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00184 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00232 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99985 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47450 * 89.99500 * 22 20 18 24 24 H 1.48500 * 109.47129 * 210.00262 * 22 20 18 25 25 H 1.48508 * 109.46914 * 329.99926 * 22 20 18 26 26 C 1.48524 * 104.20759 * 320.32510 * 13 12 10 27 27 C 1.54305 * 104.69496 * 39.67918 * 26 13 12 28 28 C 1.52998 * 112.88092 * 98.45818 * 27 26 13 29 29 C 1.47202 * 126.70296 * 180.02562 * 8 6 3 30 30 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47273 * 300.00152 * 1 2 3 32 32 H 1.08998 * 109.47609 * 60.00099 * 1 2 3 33 33 H 1.09001 * 109.47273 * 239.99848 * 2 1 3 34 34 H 1.09000 * 109.47001 * 119.99468 * 2 1 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 37 37 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 38 38 H 1.09007 * 110.06941 * 267.93551 * 9 8 6 39 39 H 1.08994 * 110.07008 * 29.46480 * 9 8 6 40 40 H 1.08995 * 110.39095 * 255.14695 * 12 10 9 41 41 H 1.08996 * 110.39157 * 17.42395 * 12 10 9 42 42 H 1.09003 * 109.46724 * 50.12642 * 14 13 12 43 43 H 1.08998 * 109.47127 * 170.12741 * 14 13 12 44 44 H 0.97001 * 119.99420 * 359.97438 * 17 15 14 45 45 H 0.96998 * 119.99801 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.39216 * 280.87140 * 26 13 12 47 47 H 1.08999 * 110.39148 * 158.48073 * 26 13 12 48 48 H 1.09003 * 109.47205 * 182.61001 * 28 27 26 49 49 H 1.09002 * 109.46983 * 302.60290 * 28 27 26 50 50 H 1.08995 * 109.47167 * 62.59840 * 28 27 26 51 51 H 1.08998 * 110.07065 * 330.53386 * 29 8 6 52 52 H 1.09003 * 110.07173 * 92.00836 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5418 1.4444 0.1238 7 8 4.1449 0.3953 0.2046 8 7 4.2148 2.6119 0.1458 9 6 3.6366 3.9624 0.0528 10 6 4.5564 4.8829 0.8776 11 1 4.6893 5.8554 0.4035 12 6 4.0133 4.9870 2.3181 13 7 5.2140 4.8621 3.1834 14 6 4.8421 4.4529 4.5443 15 6 4.1233 5.5858 5.2307 16 8 3.9387 6.6310 4.6437 17 7 3.6857 5.4375 6.4968 18 6 3.0323 6.4682 7.1214 19 1 2.8679 7.3990 6.5988 20 6 2.5807 6.3151 8.4265 21 7 1.9549 7.3033 9.0254 22 14 2.8644 4.7051 9.3302 23 1 4.1622 4.7632 10.0496 24 1 1.7669 4.4851 10.3060 25 1 2.8897 3.5869 8.3533 26 6 6.0350 3.8177 2.5191 27 6 5.8938 4.1095 1.0105 28 6 7.0756 4.8990 0.4441 29 6 5.6720 2.7854 0.2605 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3075 36 1 0.5489 2.1252 -1.3969 37 1 2.0698 1.5875 -2.1492 38 1 3.6125 4.2882 -0.9872 39 1 2.6299 3.9679 0.4704 40 1 3.5317 5.9523 2.4736 41 1 3.3123 4.1769 2.5191 42 1 4.1868 3.5832 4.4958 43 1 5.7411 4.1996 5.1060 44 1 3.8331 4.6014 6.9660 45 1 1.6393 7.1963 9.9363 46 1 5.6483 2.8256 2.7519 47 1 7.0774 3.9017 2.8262 48 1 6.8976 5.1137 -0.6096 49 1 7.1836 5.8349 0.9924 50 1 7.9876 4.3109 0.5462 51 1 6.1038 1.9590 0.8250 52 1 6.1219 2.8361 -0.7311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101128698.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:14 Heat of formation + Delta-G solvation = -64.197656 kcal Electronic energy + Delta-G solvation = -30802.710118 eV Core-core repulsion = 26801.994181 eV Total energy + Delta-G solvation = -4000.715937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15480 -39.40059 -38.23050 -35.79235 -35.67731 -33.96209 -32.97358 -31.69422 -31.13724 -30.10645 -27.97479 -26.91862 -26.08404 -25.50498 -24.68360 -22.98205 -21.39887 -21.22228 -19.71119 -19.27519 -19.05022 -18.22414 -17.18755 -16.38723 -16.08082 -15.72255 -15.44064 -15.16257 -15.10403 -14.82031 -14.39637 -14.15011 -13.87812 -13.79575 -13.49391 -13.31127 -13.07551 -13.00176 -12.75562 -12.66336 -12.45647 -12.40215 -12.25586 -12.02171 -11.94218 -11.80644 -11.76791 -11.50925 -11.31342 -11.09044 -11.08763 -10.97154 -10.82701 -10.75239 -10.65043 -10.59599 -9.98353 -9.88978 -9.56050 -8.92820 -8.63223 -8.19452 -8.10660 -6.31844 -3.83128 2.42926 2.72931 3.02107 3.06603 3.14654 3.72910 3.88455 4.04772 4.09675 4.25676 4.38867 4.42838 4.54647 4.61901 4.83620 4.85355 4.94816 4.98272 5.03983 5.06987 5.19141 5.19974 5.25154 5.29599 5.33921 5.42110 5.43147 5.45960 5.50629 5.56173 5.60189 5.60596 5.65067 5.69903 5.78140 5.80101 5.82306 5.87230 5.92192 5.95828 6.00894 6.05342 6.09226 6.21415 6.33551 6.98848 7.07449 7.30255 7.57711 7.95143 8.13489 8.59653 8.94566 9.41940 9.82878 10.81302 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.003140 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.215853 B = 8914.671298 C =10385.618717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.109 4.109 4 H 0.097 0.903 5 C -0.151 4.151 6 C 0.536 3.464 7 O -0.543 6.543 8 N -0.616 5.616 9 C 0.103 3.897 10 C -0.098 4.098 11 H 0.105 0.895 12 C 0.045 3.955 13 N -0.480 5.480 14 C 0.031 3.969 15 C 0.455 3.545 16 O -0.559 6.559 17 N -0.592 5.592 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.882 5.882 22 Si 0.878 3.122 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.270 1.270 26 C 0.041 3.959 27 C -0.072 4.072 28 C -0.125 4.125 29 C 0.114 3.886 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.037 0.963 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.043 0.957 47 H 0.083 0.917 48 H 0.057 0.943 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.080 0.920 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 -12.229 -20.706 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.130 4.130 4 H 0.115 0.885 5 C -0.208 4.208 6 C 0.326 3.674 7 O -0.420 6.420 8 N -0.349 5.349 9 C -0.020 4.020 10 C -0.117 4.117 11 H 0.123 0.877 12 C -0.083 4.083 13 N -0.203 5.203 14 C -0.101 4.101 15 C 0.240 3.760 16 O -0.441 6.441 17 N -0.232 5.232 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.522 5.522 22 Si 0.705 3.295 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.087 4.087 27 C -0.073 4.073 28 C -0.183 4.183 29 C -0.009 4.009 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.099 0.901 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.521 -11.583 -20.790 24.057 hybrid contribution -0.318 -1.984 1.056 2.270 sum 3.203 -13.567 -19.734 24.161 Atomic orbital electron populations 1.21848 0.95306 1.01955 1.02039 1.21337 0.95499 0.93977 1.03387 1.21327 0.91319 0.99546 1.00796 0.88453 1.21957 1.02491 1.00782 0.95600 1.20415 0.89763 0.81861 0.75405 1.90695 1.70401 1.30646 1.50214 1.48497 1.07862 1.05850 1.72724 1.22370 0.98038 0.81524 1.00113 1.22913 0.93611 0.98860 0.96359 0.87682 1.23235 0.92197 1.03010 0.89839 1.65143 1.15421 1.39497 1.00269 1.22092 1.00206 0.96454 0.91303 1.19569 0.84364 0.89327 0.82699 1.90535 1.59713 1.28944 1.64865 1.42213 1.52981 1.15262 1.12722 1.19417 1.31659 0.95506 0.96663 0.86261 1.25024 0.97067 0.97560 0.96460 1.69619 1.37802 1.31175 1.13595 0.86692 0.79056 0.83284 0.80474 1.19579 1.20172 1.19590 1.23265 0.99497 0.93749 0.92199 1.22016 0.96041 0.94171 0.95095 1.21636 0.95837 1.00389 1.00418 1.22111 0.81198 0.97366 1.00269 0.92428 0.92518 0.92402 0.91407 0.91172 0.91570 0.91038 0.92208 0.90937 0.89932 0.87922 0.94432 0.93344 0.89154 0.79766 0.91624 0.93910 0.89853 0.92402 0.90936 0.92345 0.90150 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.10 -0.96 4.75 -26.73 -0.13 -1.09 16 3 C -0.11 -1.00 2.05 -91.77 -0.19 -1.19 16 4 H 0.10 0.87 7.87 -51.93 -0.41 0.46 16 5 C -0.15 -1.07 8.72 37.16 0.32 -0.74 16 6 C 0.54 6.47 7.24 -10.99 -0.08 6.39 16 7 O -0.54 -8.45 16.15 5.56 0.09 -8.36 16 8 N -0.62 -6.51 3.31 -171.42 -0.57 -7.08 16 9 C 0.10 0.91 4.53 -3.11 -0.01 0.89 16 10 C -0.10 -1.02 3.71 -88.29 -0.33 -1.35 16 11 H 0.11 1.02 7.90 -51.93 -0.41 0.61 16 12 C 0.04 0.65 5.24 -2.24 -0.01 0.63 16 13 N -0.48 -7.45 5.06 -231.57 -1.17 -8.62 16 14 C 0.03 0.53 5.30 -4.98 -0.03 0.51 16 15 C 0.45 10.24 7.59 -10.98 -0.08 10.15 16 16 O -0.56 -14.59 14.41 5.55 0.08 -14.51 16 17 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 18 C -0.30 -8.54 10.16 -14.94 -0.15 -8.70 16 19 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 22 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 26 C 0.04 0.50 5.56 -2.24 -0.01 0.49 16 27 C -0.07 -0.72 1.08 -152.33 -0.16 -0.89 16 28 C -0.13 -1.06 8.59 37.16 0.32 -0.74 16 29 C 0.11 1.15 5.92 -3.25 -0.02 1.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.37 6.57 -51.93 -0.34 0.02 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.75 7.95 -51.93 -0.41 0.34 16 35 H 0.07 0.43 5.15 -51.93 -0.27 0.16 16 36 H 0.07 0.42 6.57 -51.93 -0.34 0.08 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.51 7.55 -51.93 -0.39 0.12 16 39 H 0.08 0.70 6.36 -51.93 -0.33 0.37 16 40 H 0.10 1.77 6.90 -51.93 -0.36 1.41 16 41 H 0.04 0.54 7.23 -51.93 -0.38 0.17 16 42 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 43 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 44 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.04 0.55 7.39 -51.93 -0.38 0.16 16 47 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 0.92 7.37 -51.93 -0.38 0.53 16 52 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -33.79 397.14 -8.69 -42.48 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.81 Total: 8.66 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.30 Total: 5.78 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -1.02 Total: -54.75 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.17 Total: -22.87 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.79 -8.69 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101128698.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.719 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds