Wall clock time and date at job start Tue Mar 31 2020 20:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08996 * 109.46884 * 55.00564 * 3 2 1 5 5 C 1.52997 * 109.47127 * 294.99812 * 3 2 1 6 6 C 1.50699 * 109.46866 * 175.00019 * 3 2 1 7 7 O 1.21282 * 120.00041 * 359.97438 * 6 3 2 8 8 N 1.34779 * 120.00037 * 180.02562 * 6 3 2 9 9 C 1.47198 * 126.70006 * 359.68206 * 8 6 3 10 10 C 1.54061 * 106.25084 * 148.62102 * 9 8 6 11 11 H 1.09004 * 111.89970 * 141.15327 * 10 9 8 12 12 C 1.54306 * 109.26592 * 266.91499 * 10 9 8 13 13 N 1.48528 * 104.69187 * 136.33989 * 12 10 9 14 14 C 1.46896 * 111.00053 * 200.77150 * 13 12 10 15 15 C 1.50701 * 109.47151 * 290.12805 * 14 13 12 16 16 O 1.21284 * 120.00132 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99826 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99998 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00014 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00184 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00232 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99985 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47450 * 89.99500 * 22 20 18 24 24 H 1.48500 * 109.47129 * 210.00262 * 22 20 18 25 25 H 1.48508 * 109.46914 * 329.99926 * 22 20 18 26 26 C 1.48524 * 104.20759 * 320.32510 * 13 12 10 27 27 C 1.54305 * 104.69496 * 39.67918 * 26 13 12 28 28 C 1.52998 * 112.88092 * 98.45818 * 27 26 13 29 29 C 1.47202 * 126.70296 * 180.02562 * 8 6 3 30 30 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47273 * 300.00152 * 1 2 3 32 32 H 1.08998 * 109.47609 * 60.00099 * 1 2 3 33 33 H 1.09001 * 109.47273 * 239.99848 * 2 1 3 34 34 H 1.09000 * 109.47001 * 119.99468 * 2 1 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 37 37 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 38 38 H 1.09007 * 110.06941 * 267.93551 * 9 8 6 39 39 H 1.08994 * 110.07008 * 29.46480 * 9 8 6 40 40 H 1.08995 * 110.39095 * 255.14695 * 12 10 9 41 41 H 1.08996 * 110.39157 * 17.42395 * 12 10 9 42 42 H 1.09003 * 109.46724 * 50.12642 * 14 13 12 43 43 H 1.08998 * 109.47127 * 170.12741 * 14 13 12 44 44 H 0.97001 * 119.99420 * 359.97438 * 17 15 14 45 45 H 0.96998 * 119.99801 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.39216 * 280.87140 * 26 13 12 47 47 H 1.08999 * 110.39148 * 158.48073 * 26 13 12 48 48 H 1.09003 * 109.47205 * 182.61001 * 28 27 26 49 49 H 1.09002 * 109.46983 * 302.60290 * 28 27 26 50 50 H 1.08995 * 109.47167 * 62.59840 * 28 27 26 51 51 H 1.08998 * 110.07065 * 330.53386 * 29 8 6 52 52 H 1.09003 * 110.07173 * 92.00836 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5418 1.4444 0.1238 7 8 4.1449 0.3953 0.2046 8 7 4.2148 2.6119 0.1458 9 6 3.6366 3.9624 0.0528 10 6 4.5564 4.8829 0.8776 11 1 4.6893 5.8554 0.4035 12 6 4.0133 4.9870 2.3181 13 7 5.2140 4.8621 3.1834 14 6 4.8421 4.4529 4.5443 15 6 4.1233 5.5858 5.2307 16 8 3.9387 6.6310 4.6437 17 7 3.6857 5.4375 6.4968 18 6 3.0323 6.4682 7.1214 19 1 2.8679 7.3990 6.5988 20 6 2.5807 6.3151 8.4265 21 7 1.9549 7.3033 9.0254 22 14 2.8644 4.7051 9.3302 23 1 4.1622 4.7632 10.0496 24 1 1.7669 4.4851 10.3060 25 1 2.8897 3.5869 8.3533 26 6 6.0350 3.8177 2.5191 27 6 5.8938 4.1095 1.0105 28 6 7.0756 4.8990 0.4441 29 6 5.6720 2.7854 0.2605 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3075 36 1 0.5489 2.1252 -1.3969 37 1 2.0698 1.5875 -2.1492 38 1 3.6125 4.2882 -0.9872 39 1 2.6299 3.9679 0.4704 40 1 3.5317 5.9523 2.4736 41 1 3.3123 4.1769 2.5191 42 1 4.1868 3.5832 4.4958 43 1 5.7411 4.1996 5.1060 44 1 3.8331 4.6014 6.9660 45 1 1.6393 7.1963 9.9363 46 1 5.6483 2.8256 2.7519 47 1 7.0774 3.9017 2.8262 48 1 6.8976 5.1137 -0.6096 49 1 7.1836 5.8349 0.9924 50 1 7.9876 4.3109 0.5462 51 1 6.1038 1.9590 0.8250 52 1 6.1219 2.8361 -0.7311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101128698.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:13 Heat of formation + Delta-G solvation = -88.983693 kcal Electronic energy + Delta-G solvation = -30803.784921 eV Core-core repulsion = 26801.994181 eV Total energy + Delta-G solvation = -4001.790741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.06522 -40.57108 -39.81160 -36.92314 -36.46224 -35.91149 -33.96345 -33.72295 -32.11584 -30.75556 -29.33443 -27.67050 -27.01980 -26.69444 -25.93351 -24.14614 -22.30721 -22.12949 -21.29165 -20.56874 -20.06538 -19.84796 -18.07583 -17.74388 -17.24674 -16.87449 -16.61694 -16.33664 -16.28409 -16.11705 -15.58423 -15.21661 -15.12071 -14.85875 -14.57988 -14.50466 -14.30333 -14.03318 -13.87609 -13.84659 -13.58590 -13.36660 -13.07831 -13.05645 -12.92539 -12.89771 -12.61559 -12.51050 -12.46185 -12.42563 -12.23821 -12.00329 -11.77189 -11.73440 -11.64056 -11.59836 -11.54940 -11.46805 -10.79701 -10.41472 -10.25186 -9.79685 -9.39542 -8.42409 -6.02663 1.28144 1.33006 1.41470 1.53802 1.92294 1.93358 2.20696 2.60372 3.10487 3.16007 3.23569 3.46312 3.55859 3.69297 3.82243 3.93952 4.03810 4.08587 4.12622 4.20552 4.25738 4.32528 4.33408 4.43070 4.46575 4.55164 4.59570 4.60879 4.65280 4.66889 4.71784 4.77291 4.89223 4.92389 4.96158 4.98876 5.07430 5.10705 5.14052 5.16677 5.21031 5.29235 5.32808 5.45218 5.49866 5.51167 5.83845 5.87159 5.98583 6.45892 6.58346 6.87125 7.06669 7.38238 7.94608 8.75123 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.003140 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.215853 B = 8914.671298 C =10385.618717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.106 4.106 4 H 0.101 0.899 5 C -0.146 4.146 6 C 0.530 3.470 7 O -0.585 6.585 8 N -0.615 5.615 9 C 0.105 3.895 10 C -0.091 4.091 11 H 0.116 0.884 12 C 0.046 3.954 13 N -0.501 5.501 14 C 0.043 3.957 15 C 0.455 3.545 16 O -0.601 6.601 17 N -0.594 5.594 18 C -0.325 4.325 19 H 0.058 0.942 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.961 3.039 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.237 1.237 26 C 0.044 3.956 27 C -0.063 4.063 28 C -0.120 4.120 29 C 0.115 3.885 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.068 0.932 43 H 0.116 0.884 44 H 0.387 0.613 45 H 0.279 0.721 46 H 0.039 0.961 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.057 0.943 50 H 0.069 0.931 51 H 0.066 0.934 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 -14.512 -22.030 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.140 4.140 3 C -0.127 4.127 4 H 0.119 0.881 5 C -0.203 4.203 6 C 0.320 3.680 7 O -0.466 6.466 8 N -0.347 5.347 9 C -0.017 4.017 10 C -0.111 4.111 11 H 0.134 0.866 12 C -0.082 4.082 13 N -0.225 5.225 14 C -0.089 4.089 15 C 0.243 3.757 16 O -0.484 6.484 17 N -0.236 5.236 18 C -0.455 4.455 19 H 0.077 0.923 20 C -0.211 4.211 21 N -0.574 5.574 22 Si 0.781 3.219 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.160 1.160 26 C -0.084 4.084 27 C -0.065 4.065 28 C -0.178 4.178 29 C -0.008 4.008 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.134 0.866 44 H 0.222 0.778 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.076 0.924 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.308 -13.852 -22.141 26.470 hybrid contribution -0.546 -1.137 1.410 1.892 sum 3.763 -14.989 -20.731 25.857 Atomic orbital electron populations 1.21819 0.93650 1.02492 1.02697 1.21302 0.96854 0.93884 1.02001 1.21368 0.89394 0.99743 1.02223 0.88074 1.21951 1.03491 1.00865 0.94010 1.20924 0.90818 0.81544 0.74666 1.90670 1.71394 1.32155 1.52359 1.48575 1.08226 1.06153 1.71792 1.22479 0.97618 0.80120 1.01487 1.22879 0.94076 1.00015 0.94094 0.86585 1.23144 0.91971 1.00761 0.92364 1.65097 1.16231 1.41231 0.99935 1.21985 1.00811 0.94031 0.92063 1.20685 0.82846 0.90154 0.82036 1.90520 1.60819 1.31313 1.65763 1.42055 1.53228 1.14961 1.13327 1.18998 1.33898 0.95087 0.97472 0.92345 1.26037 0.95848 1.02418 0.96816 1.69792 1.38941 1.34270 1.14367 0.85422 0.79331 0.77963 0.79171 1.18163 1.19873 1.16016 1.23327 0.99250 0.92433 0.93381 1.21993 0.96456 0.94305 0.93706 1.21612 0.95505 0.99486 1.01182 1.22134 0.81085 0.96606 1.00988 0.92037 0.92539 0.90977 0.92092 0.93327 0.90643 0.89523 0.92421 0.87951 0.89509 0.91628 0.94780 0.91448 0.86578 0.77759 0.91139 0.94289 0.88789 0.90533 0.92360 0.91161 0.91526 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 71.98 0.70 -1.25 16 2 C -0.10 -1.82 4.75 30.60 0.15 -1.67 16 3 C -0.11 -1.80 2.05 -11.54 -0.02 -1.83 16 4 H 0.10 1.64 7.87 -2.39 -0.02 1.62 16 5 C -0.15 -1.69 8.72 71.98 0.63 -1.06 16 6 C 0.53 12.17 7.24 87.66 0.63 12.80 16 7 O -0.59 -18.11 16.15 -3.04 -0.05 -18.16 16 8 N -0.62 -11.74 3.31 -814.65 -2.70 -14.43 16 9 C 0.11 1.58 4.53 86.60 0.39 1.97 16 10 C -0.09 -1.73 3.71 -9.29 -0.03 -1.77 16 11 H 0.12 2.00 7.90 -2.38 -0.02 1.98 16 12 C 0.05 1.29 5.24 86.43 0.45 1.74 16 13 N -0.50 -15.07 5.06 -886.56 -4.49 -19.56 16 14 C 0.04 1.39 5.30 85.56 0.45 1.84 16 15 C 0.46 20.72 7.59 87.66 0.66 21.39 16 16 O -0.60 -32.75 14.41 -3.04 -0.04 -32.79 16 17 N -0.59 -28.34 5.09 -306.99 -1.56 -29.90 16 18 C -0.33 -19.06 10.16 84.04 0.85 -18.21 16 19 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 21 N -0.93 -56.18 13.96 21.66 0.30 -55.88 16 22 Si 0.96 39.26 27.74 68.60 1.90 41.17 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.24 -8.30 6.52 99.48 0.65 -7.65 16 26 C 0.04 0.98 5.56 86.43 0.48 1.46 16 27 C -0.06 -1.12 1.08 -50.77 -0.05 -1.17 16 28 C -0.12 -1.69 8.59 71.98 0.62 -1.08 16 29 C 0.11 2.05 5.92 86.51 0.51 2.57 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.73 6.57 -2.39 -0.02 0.72 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.05 7.95 -2.39 -0.02 1.04 16 35 H 0.07 0.73 5.15 -2.39 -0.01 0.72 16 36 H 0.09 0.76 6.57 -2.39 -0.02 0.75 16 37 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.10 1.02 7.55 -2.38 -0.02 1.00 16 39 H 0.09 1.27 6.36 -2.39 -0.02 1.25 16 40 H 0.07 2.35 6.90 -2.39 -0.02 2.33 16 41 H 0.03 0.97 7.23 -2.39 -0.02 0.95 16 42 H 0.07 1.96 7.88 -2.39 -0.02 1.94 16 43 H 0.12 3.19 8.13 -2.39 -0.02 3.17 16 44 H 0.39 15.57 5.76 -92.71 -0.53 15.03 16 45 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.04 0.92 7.39 -2.39 -0.02 0.90 16 47 H 0.09 1.91 7.92 -2.39 -0.02 1.89 16 48 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 1.41 7.37 -2.39 -0.02 1.39 16 52 H 0.09 1.28 7.88 -2.39 -0.02 1.26 16 Total: -1.00 -79.46 397.14 0.57 -78.89 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.32 Total: 35.17 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.89 Total: 15.50 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -8.44 Total: -119.77 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.09 Total: -50.95 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.90 Total: 41.17 kcal Total: -79.46 0.57 -78.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101128698.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.098 kcal (2) G-P(sol) polarization free energy of solvation -79.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds