Wall clock time and date at job start Tue Mar 31 2020 19:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46726 * 2 1 4 4 C 1.50700 * 109.47299 * 119.99946 * 2 1 3 5 5 O 1.21281 * 120.00040 * 240.00238 * 4 2 1 6 6 N 1.34781 * 119.99658 * 60.00639 * 4 2 1 7 7 C 1.46503 * 119.99875 * 359.97438 * 6 4 2 8 8 C 1.46496 * 119.99743 * 179.97438 * 6 4 2 9 9 C 1.50697 * 109.47351 * 269.99822 * 8 6 4 10 10 O 1.21288 * 119.99760 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00469 * 180.02562 * 9 8 6 12 12 C 1.48675 * 126.63628 * 0.26342 * 11 9 8 13 13 C 1.53742 * 105.69078 * 211.40405 * 12 11 9 14 14 H 1.08993 * 112.28623 * 103.83307 * 13 12 11 15 15 C 1.54452 * 109.01569 * 228.93095 * 13 12 11 16 16 N 1.48338 * 104.32416 * 137.92094 * 15 13 12 17 17 C 1.36935 * 128.19637 * 138.15481 * 16 15 13 18 18 H 1.07993 * 120.00409 * 338.76291 * 17 16 15 19 19 C 1.38820 * 119.99829 * 158.75649 * 17 16 15 20 20 N 1.31614 * 119.99836 * 336.54065 * 19 17 16 21 21 Si 1.86802 * 119.99695 * 156.26000 * 19 17 16 22 22 H 1.48497 * 109.47125 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46758 * 120.00325 * 21 19 17 24 24 H 1.48499 * 109.47208 * 239.99921 * 21 19 17 25 25 C 1.48328 * 103.60426 * 318.41956 * 16 15 13 26 26 C 1.54089 * 104.50367 * 41.55098 * 25 16 15 27 27 C 1.52997 * 112.14949 * 97.17369 * 26 25 16 28 28 C 1.47192 * 126.70762 * 179.97438 * 11 9 8 29 29 H 1.09002 * 109.47045 * 60.00329 * 1 2 3 30 30 H 1.09003 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47213 * 299.99673 * 1 2 3 32 32 H 1.09000 * 109.47409 * 240.00548 * 2 1 3 33 33 H 1.09001 * 109.46672 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47047 * 300.00146 * 3 2 1 35 35 H 1.09000 * 109.46729 * 60.00131 * 3 2 1 36 36 H 1.08998 * 109.47046 * 270.00602 * 7 6 4 37 37 H 1.08999 * 109.47334 * 30.00732 * 7 6 4 38 38 H 1.09000 * 109.46446 * 150.00270 * 7 6 4 39 39 H 1.09005 * 109.46930 * 149.99269 * 8 6 4 40 40 H 1.09007 * 109.47170 * 29.99462 * 8 6 4 41 41 H 1.09000 * 110.86319 * 92.16511 * 12 11 9 42 42 H 1.08998 * 109.98355 * 330.17639 * 12 11 9 43 43 H 1.09005 * 110.46228 * 19.21668 * 15 13 12 44 44 H 1.08991 * 110.57529 * 256.68770 * 15 13 12 45 45 H 0.96995 * 120.00301 * 353.97091 * 20 19 17 46 46 H 1.08996 * 110.46661 * 160.29378 * 25 16 15 47 47 H 1.09006 * 110.46258 * 282.87465 * 25 16 15 48 48 H 1.09000 * 109.46843 * 302.40650 * 27 26 25 49 49 H 1.08995 * 109.47431 * 62.40423 * 27 26 25 50 50 H 1.08993 * 109.47310 * 182.40642 * 27 26 25 51 51 H 1.08996 * 110.06457 * 29.38728 * 28 11 9 52 52 H 1.08998 * 110.06730 * 267.87020 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -0.1210 2.0288 6 7 1.7069 -2.0008 1.4436 7 6 0.8643 -2.7126 0.4795 8 6 2.1957 -2.6916 2.6395 9 6 3.5231 -3.3385 2.3386 10 8 4.0124 -3.2333 1.2338 11 7 4.1660 -4.0348 3.2968 12 6 3.7019 -4.2622 4.6908 13 6 4.9775 -4.3522 5.5443 14 1 5.1555 -3.4432 6.1187 15 6 4.8947 -5.6061 6.4423 16 7 6.2554 -6.1934 6.3789 17 6 6.9962 -6.7259 7.4001 18 1 6.7765 -6.4586 8.4231 19 6 8.0297 -7.6094 7.1203 20 7 8.0261 -8.2910 5.9944 21 14 9.4296 -7.8250 8.3382 22 1 9.2023 -6.9470 9.5141 23 1 9.4859 -9.2412 8.7819 24 1 10.7130 -7.4589 7.6872 25 6 6.6260 -6.0614 4.9488 26 6 6.1289 -4.6587 4.5492 27 6 7.2443 -3.6132 4.6073 28 6 5.4607 -4.7227 3.1657 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 -0.1836 -2.5925 0.7545 37 1 1.0275 -2.3033 -0.5175 38 1 1.1221 -3.7716 0.4840 39 1 1.4778 -3.4562 2.9364 40 1 2.3172 -1.9729 3.4500 41 1 3.1360 -5.1909 4.7649 42 1 3.0894 -3.4232 5.0211 43 1 4.1583 -6.3077 6.0503 44 1 4.6471 -5.3280 7.4667 45 1 7.2605 -8.2430 5.4008 46 1 7.7070 -6.1303 4.8273 47 1 6.1254 -6.8249 4.3533 48 1 7.6661 -3.5873 5.6121 49 1 8.0246 -3.8741 3.8924 50 1 6.8370 -2.6332 4.3589 51 1 6.0808 -4.2149 2.4271 52 1 5.3046 -5.7610 2.8733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101255438.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:37 Heat of formation + Delta-G solvation = -35.402509 kcal Electronic energy + Delta-G solvation = -30748.890010 eV Core-core repulsion = 26749.422724 eV Total energy + Delta-G solvation = -3999.467286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.74271 -39.99172 -38.34690 -35.75130 -35.13537 -34.76418 -32.73650 -31.50832 -29.71038 -29.22694 -27.47468 -26.92536 -26.38007 -25.45246 -25.15085 -23.11803 -22.27124 -20.62890 -19.70233 -19.04371 -18.51071 -17.48640 -17.44396 -17.10686 -16.35455 -15.75462 -15.67605 -15.11899 -14.69512 -14.40260 -14.31383 -14.04578 -13.85210 -13.61959 -13.55632 -13.34121 -12.98301 -12.95537 -12.68008 -12.63671 -12.58333 -12.38561 -12.11861 -12.07756 -11.81866 -11.76466 -11.37880 -11.35119 -11.18352 -11.08220 -10.72380 -10.47979 -10.30947 -10.20602 -10.11669 -10.00025 -9.99102 -9.89711 -9.46526 -8.89281 -8.60314 -8.50266 -7.02811 -6.15442 -3.22925 2.33367 2.60471 2.64655 3.17835 3.48500 3.52138 3.64481 4.15213 4.39606 4.52200 4.52554 4.61636 4.71302 4.77202 4.82115 4.91168 4.97734 5.08627 5.13290 5.20023 5.24616 5.28801 5.33689 5.39365 5.41609 5.48477 5.51954 5.52319 5.59868 5.63250 5.81145 5.81618 5.90055 5.94486 5.98872 6.03118 6.11588 6.16025 6.21601 6.37641 6.52691 6.55645 6.61818 6.79537 6.86943 7.00076 7.04712 7.60392 7.69895 7.93273 8.19557 8.40577 8.93047 9.74144 10.37779 11.20111 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030964 B = 0.002326 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.049360 B =12035.085734 C =12178.356516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.524 3.476 5 O -0.535 6.535 6 N -0.601 5.601 7 C 0.080 3.920 8 C 0.101 3.899 9 C 0.514 3.486 10 O -0.540 6.540 11 N -0.615 5.615 12 C 0.105 3.895 13 C -0.109 4.109 14 H 0.087 0.913 15 C 0.131 3.869 16 N -0.597 5.597 17 C -0.327 4.327 18 H 0.065 0.935 19 C -0.026 4.026 20 N -0.920 5.920 21 Si 1.073 2.927 22 H -0.292 1.292 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.149 3.851 26 C -0.086 4.086 27 C -0.120 4.120 28 C 0.119 3.881 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.051 0.949 45 H 0.268 0.732 46 H 0.068 0.932 47 H 0.027 0.973 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.045 0.955 51 H 0.075 0.925 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.798 13.733 -11.013 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 C -0.190 4.190 4 C 0.312 3.688 5 O -0.410 6.410 6 N -0.334 5.334 7 C -0.062 4.062 8 C -0.026 4.026 9 C 0.301 3.699 10 O -0.417 6.417 11 N -0.349 5.349 12 C -0.017 4.017 13 C -0.129 4.129 14 H 0.105 0.895 15 C 0.005 3.995 16 N -0.321 5.321 17 C -0.455 4.455 18 H 0.083 0.917 19 C -0.228 4.228 20 N -0.560 5.560 21 Si 0.903 3.097 22 H -0.218 1.218 23 H -0.221 1.221 24 H -0.216 1.216 25 C 0.022 3.978 26 C -0.089 4.089 27 C -0.177 4.177 28 C -0.004 4.004 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.044 0.956 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.093 0.907 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.677 13.340 -10.863 23.275 hybrid contribution -1.525 0.488 -0.223 1.617 sum -17.202 13.828 -11.086 24.698 Atomic orbital electron populations 1.22063 0.92941 1.03412 1.02928 1.21274 0.97597 0.97980 0.96523 1.21614 1.01986 0.93373 1.02018 1.20751 0.79349 0.81041 0.87651 1.90703 1.37325 1.65986 1.47035 1.47405 1.51244 1.11160 1.23553 1.21979 0.93676 0.97887 0.92694 1.21271 0.93709 0.98167 0.89455 1.20731 0.86984 0.78230 0.83998 1.90683 1.67918 1.60769 1.22379 1.49005 1.22037 1.51740 1.12103 1.22593 0.97452 1.01257 0.80427 1.23064 0.92725 1.00677 0.96481 0.89513 1.21853 0.89213 0.91475 0.96985 1.45132 1.11753 1.70666 1.04522 1.19771 1.14927 1.23846 0.86943 0.91725 1.25850 1.02108 0.93113 1.01695 1.70707 1.33977 1.37795 1.13515 0.83411 0.76114 0.75680 0.74529 1.21801 1.22070 1.21610 1.21747 0.99707 0.90021 0.86303 1.22318 0.95139 0.99114 0.92333 1.21584 0.97061 0.96662 1.02429 1.22161 0.83664 0.96709 0.97853 0.91405 0.91055 0.92108 0.88360 0.91892 0.92011 0.91941 0.91930 0.90474 0.90997 0.87533 0.86932 0.90574 0.90948 0.95681 0.93051 0.92053 0.91363 0.95572 0.91661 0.92803 0.93577 0.90685 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 8.83 37.16 0.33 -0.56 16 2 C -0.11 -0.96 2.45 -91.77 -0.22 -1.19 16 3 C -0.13 -1.16 8.48 37.16 0.32 -0.84 16 4 C 0.52 6.48 7.08 -10.98 -0.08 6.40 16 5 O -0.53 -8.77 15.56 5.56 0.09 -8.68 16 6 N -0.60 -6.44 2.36 -182.95 -0.43 -6.87 16 7 C 0.08 0.56 8.80 59.85 0.53 1.08 16 8 C 0.10 1.12 4.88 -5.20 -0.03 1.10 16 9 C 0.51 7.78 7.95 -10.99 -0.09 7.69 16 10 O -0.54 -10.08 16.66 5.55 0.09 -9.99 16 11 N -0.61 -9.21 3.35 -170.43 -0.57 -9.78 16 12 C 0.11 1.38 6.48 -2.45 -0.02 1.36 16 13 C -0.11 -1.76 3.70 -88.28 -0.33 -2.09 16 14 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 15 C 0.13 2.53 6.76 -2.27 -0.02 2.52 16 16 N -0.60 -14.49 3.22 -168.70 -0.54 -15.03 16 17 C -0.33 -8.96 10.22 -15.06 -0.15 -9.12 16 18 H 0.06 1.77 7.93 -52.49 -0.42 1.35 16 19 C -0.03 -0.73 5.15 -17.43 -0.09 -0.82 16 20 N -0.92 -27.36 12.77 55.49 0.71 -26.66 16 21 Si 1.07 25.14 29.98 -169.99 -5.10 20.05 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.15 3.30 4.32 -2.47 -0.01 3.29 16 26 C -0.09 -1.54 1.07 -152.35 -0.16 -1.71 16 27 C -0.12 -2.08 8.56 37.16 0.32 -1.77 16 28 C 0.12 1.99 6.23 -3.26 -0.02 1.97 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.32 4.53 -51.93 -0.24 0.09 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.76 7.40 -51.93 -0.38 0.37 16 33 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.06 0.28 6.95 -51.93 -0.36 -0.08 16 37 H 0.08 0.46 6.01 -51.93 -0.31 0.15 16 38 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 39 H 0.11 0.83 8.07 -51.93 -0.42 0.42 16 40 H 0.11 1.30 7.16 -51.93 -0.37 0.93 16 41 H 0.08 0.93 7.11 -51.93 -0.37 0.56 16 42 H 0.07 0.76 7.35 -51.93 -0.38 0.38 16 43 H 0.03 0.48 7.18 -51.93 -0.37 0.10 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.27 7.99 6.44 -40.82 -0.26 7.73 16 46 H 0.07 1.71 7.13 -51.93 -0.37 1.34 16 47 H 0.03 0.60 6.84 -51.93 -0.36 0.25 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.07 1.32 7.61 -51.93 -0.40 0.92 16 52 H 0.07 1.17 7.15 -51.93 -0.37 0.80 16 LS Contribution 400.22 15.07 6.03 6.03 Total: -1.00 -35.53 400.22 -8.25 -43.79 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.81 Total: -0.16 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 0.28 Total: 7.32 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.84 Total: -58.34 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.18 Total: -18.68 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.05 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.53 -8.25 -43.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101255438.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.383 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds