Wall clock time and date at job start Tue Mar 31 2020 20:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.53004 * 109.47236 * 65.00086 * 3 2 1 6 6 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 7 7 O 1.21276 * 119.99979 * 359.97438 * 6 3 2 8 8 N 1.34775 * 119.99964 * 179.97438 * 6 3 2 9 9 C 1.46502 * 119.99977 * 179.97438 * 8 6 3 10 10 C 1.50703 * 109.47195 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00187 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99921 * 180.02562 * 10 9 8 13 13 C 1.47220 * 126.70222 * 359.68138 * 12 10 9 14 14 C 1.54083 * 106.22431 * 148.67149 * 13 12 10 15 15 H 1.08995 * 112.45877 * 141.24521 * 14 13 12 16 16 C 1.55970 * 109.69760 * 267.41992 * 14 13 12 17 17 N 1.47222 * 106.44534 * 131.73493 * 16 14 13 18 18 C 1.36934 * 126.70304 * 148.26047 * 17 16 14 19 19 H 1.07997 * 119.99934 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99822 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99872 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46837 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47036 * 119.99672 * 22 20 18 25 25 H 1.48496 * 109.47109 * 239.99892 * 22 20 18 26 26 C 1.47216 * 106.59414 * 328.25975 * 17 16 14 27 27 C 1.53783 * 106.37911 * 31.27263 * 26 17 16 28 28 C 1.53000 * 111.85337 * 104.04073 * 27 26 17 29 29 C 1.47213 * 126.70312 * 179.97438 * 12 10 9 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09000 * 109.47403 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46917 * 300.00567 * 5 3 2 37 37 H 1.09004 * 109.46741 * 59.99889 * 5 3 2 38 38 H 0.97004 * 120.00146 * 0.02562 * 8 6 3 39 39 H 1.08994 * 109.47346 * 300.00871 * 9 8 6 40 40 H 1.09002 * 109.46745 * 60.00315 * 9 8 6 41 41 H 1.09000 * 110.07347 * 267.97850 * 13 12 10 42 42 H 1.08997 * 110.07251 * 29.52587 * 13 12 10 43 43 H 1.09003 * 110.42892 * 12.27503 * 16 14 13 44 44 H 1.08994 * 109.69340 * 250.79579 * 16 14 13 45 45 H 0.97000 * 119.99587 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.07536 * 272.04534 * 26 17 16 47 47 H 1.08999 * 110.07235 * 150.50702 * 26 17 16 48 48 H 1.09007 * 109.46820 * 182.05031 * 28 27 26 49 49 H 1.09003 * 109.47520 * 302.04813 * 28 27 26 50 50 H 1.09001 * 109.47144 * 62.05185 * 28 27 26 51 51 H 1.09002 * 110.07523 * 330.47635 * 29 12 10 52 52 H 1.09002 * 110.07658 * 92.01785 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4444 -0.1239 7 8 4.1450 0.3953 -0.2038 8 7 4.2147 2.6119 -0.1459 9 6 5.6749 2.6137 -0.2658 10 6 6.1771 4.0346 -0.2659 11 8 5.3927 4.9551 -0.1753 12 7 7.4980 4.2824 -0.3677 13 6 8.5744 3.2842 -0.4791 14 6 9.6827 3.9390 -1.3260 15 1 10.6817 3.6923 -0.9668 16 6 9.4789 3.5766 -2.8293 17 7 9.5852 4.8384 -3.5803 18 6 10.0660 4.9954 -4.8528 19 1 10.0947 5.9771 -5.3019 20 6 10.5156 3.8925 -5.5658 21 7 10.4801 2.6959 -5.0186 22 14 11.1708 4.1065 -7.3020 23 1 11.1038 5.5402 -7.6831 24 1 12.5807 3.6439 -7.3595 25 1 10.3482 3.3055 -8.2437 26 6 9.0736 5.8984 -2.6960 27 6 9.4023 5.4604 -1.2589 28 6 10.5894 6.2362 -0.6845 29 6 8.1466 5.6038 -0.3834 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.9982 3.1544 1.3072 36 1 0.5489 2.1251 1.3970 37 1 2.0699 1.5875 2.1492 38 1 3.7323 3.4510 -0.0816 39 1 6.1092 2.0752 0.5764 40 1 5.9635 2.1258 -1.1968 41 1 8.9555 3.0331 0.5108 42 1 8.2036 2.3880 -0.9763 43 1 8.4960 3.1312 -2.9834 44 1 10.2575 2.8842 -3.1490 45 1 10.7939 1.9252 -5.5170 46 1 7.9953 6.0000 -2.8187 47 1 9.5670 6.8439 -2.9211 48 1 10.8112 5.8709 0.3183 49 1 11.4605 6.0936 -1.3241 50 1 10.3422 7.2968 -0.6384 51 1 7.4737 6.3459 -0.8130 52 1 8.4278 5.8946 0.6288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101464746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:59 Heat of formation + Delta-G solvation = -54.815608 kcal Electronic energy + Delta-G solvation = -30329.084492 eV Core-core repulsion = 26328.775391 eV Total energy + Delta-G solvation = -4000.309101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.58053 -39.89593 -38.38810 -35.68229 -35.09055 -34.52348 -32.94616 -30.88480 -30.33693 -30.04840 -28.30236 -26.29296 -25.72964 -25.19266 -25.00114 -22.59943 -21.78802 -20.34780 -20.11365 -19.39333 -18.73382 -17.53426 -16.89852 -16.55940 -16.21387 -15.91401 -15.61800 -15.15312 -14.88683 -14.65163 -14.14034 -14.08050 -13.79933 -13.68897 -13.57032 -13.41846 -13.01881 -12.67530 -12.59621 -12.48627 -12.39369 -12.10762 -11.92240 -11.83630 -11.80775 -11.65785 -11.44937 -11.07896 -11.02630 -10.96052 -10.92770 -10.83197 -10.20285 -10.14069 -10.06004 -9.90905 -9.85960 -9.78736 -9.49854 -9.25339 -8.77291 -8.55484 -6.93235 -5.69475 -3.14603 2.50552 2.58706 2.70571 3.32511 3.36322 3.42105 3.44405 4.38182 4.43735 4.45154 4.54654 4.65677 4.84799 4.92909 5.04236 5.10814 5.14436 5.21777 5.24634 5.28197 5.38723 5.42114 5.47727 5.54323 5.54892 5.59136 5.61693 5.68368 5.69741 5.82032 5.83085 5.92906 5.98464 5.98851 6.08484 6.11076 6.16794 6.21341 6.31008 6.35507 6.46626 6.58981 6.73643 6.86750 7.36717 7.37869 7.55193 7.59194 7.76801 8.05793 8.12642 8.33707 9.15629 9.76235 10.43583 11.31566 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.002718 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.760399 B =10298.750721 C =11724.694152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.110 4.110 4 H 0.099 0.901 5 C -0.147 4.147 6 C 0.518 3.482 7 O -0.540 6.540 8 N -0.717 5.717 9 C 0.103 3.897 10 C 0.529 3.471 11 O -0.549 6.549 12 N -0.603 5.603 13 C 0.105 3.895 14 C -0.118 4.118 15 H 0.091 0.909 16 C 0.145 3.855 17 N -0.595 5.595 18 C -0.218 4.218 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.916 3.084 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.144 3.856 27 C -0.088 4.088 28 C -0.122 4.122 29 C 0.120 3.880 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.411 0.589 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.008 0.992 44 H 0.123 0.877 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.043 0.957 48 H 0.050 0.950 49 H 0.065 0.935 50 H 0.052 0.948 51 H 0.079 0.921 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 -0.487 14.717 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.131 4.131 4 H 0.117 0.883 5 C -0.204 4.204 6 C 0.304 3.696 7 O -0.416 6.416 8 N -0.373 5.373 9 C -0.024 4.024 10 C 0.317 3.683 11 O -0.428 6.428 12 N -0.336 5.336 13 C -0.018 4.018 14 C -0.139 4.139 15 H 0.109 0.891 16 C 0.019 3.981 17 N -0.318 5.318 18 C -0.346 4.346 19 H 0.097 0.903 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.747 3.253 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.018 3.982 27 C -0.090 4.090 28 C -0.180 4.180 29 C -0.003 4.003 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.026 0.974 44 H 0.141 0.859 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.071 0.929 51 H 0.097 0.903 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.306 -0.875 14.486 19.028 hybrid contribution 0.188 0.515 -0.900 1.054 sum -12.118 -0.360 13.586 18.209 Atomic orbital electron populations 1.21846 0.95476 1.01900 1.01883 1.21348 0.95327 0.94056 1.03617 1.21345 0.91365 0.99592 1.00782 0.88312 1.21845 1.02384 1.00419 0.95754 1.20707 0.90119 0.83127 0.75630 1.90713 1.70292 1.31368 1.49258 1.45759 1.06457 1.09934 1.75126 1.21036 0.82091 0.94359 1.04897 1.20009 0.81008 0.90900 0.76353 1.90662 1.54370 1.46240 1.51546 1.48353 1.04949 1.09365 1.70897 1.22328 0.87664 0.92140 0.99679 1.23555 0.97077 0.93266 0.99977 0.89124 1.22358 1.01166 0.90595 0.83954 1.44489 1.72403 1.02288 1.12619 1.19137 1.33370 0.94014 0.88096 0.90317 1.24778 1.01843 0.95232 0.98886 1.69593 1.53140 0.98098 1.36150 0.85970 0.78287 0.77303 0.83779 1.20542 1.21689 1.21736 1.21448 0.96151 0.92981 0.87667 1.22173 0.93741 0.96336 0.96731 1.21638 0.97456 0.98951 0.99949 1.22113 0.93899 0.84942 0.99298 0.92649 0.92457 0.92460 0.91288 0.90985 0.91964 0.91096 0.92040 0.75133 0.88486 0.87979 0.91604 0.90015 0.97401 0.85924 0.93638 0.96475 0.93840 0.93095 0.91566 0.92907 0.90277 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 37.16 0.36 -0.67 16 2 C -0.11 -0.95 4.75 -26.73 -0.13 -1.07 16 3 C -0.11 -0.99 2.72 -91.77 -0.25 -1.24 16 4 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.15 -1.05 8.84 37.16 0.33 -0.72 16 6 C 0.52 6.50 7.15 -10.99 -0.08 6.42 16 7 O -0.54 -8.67 15.92 5.56 0.09 -8.58 16 8 N -0.72 -8.83 5.42 -61.47 -0.33 -9.16 16 9 C 0.10 1.37 5.13 -5.19 -0.03 1.35 16 10 C 0.53 8.06 7.95 -10.99 -0.09 7.97 16 11 O -0.55 -9.52 15.90 5.56 0.09 -9.43 16 12 N -0.60 -9.08 3.32 -171.41 -0.57 -9.65 16 13 C 0.10 1.48 6.21 -3.08 -0.02 1.47 16 14 C -0.12 -2.01 3.80 -87.49 -0.33 -2.34 16 15 H 0.09 1.46 7.88 -51.93 -0.41 1.05 16 16 C 0.15 3.31 5.76 -2.06 -0.01 3.29 16 17 N -0.59 -14.70 3.39 -169.74 -0.58 -15.28 16 18 C -0.22 -5.92 10.34 -15.06 -0.16 -6.08 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -26.01 10.08 55.49 0.56 -25.45 16 22 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.14 2.94 6.37 -3.24 -0.02 2.92 16 27 C -0.09 -1.42 1.08 -152.73 -0.16 -1.59 16 28 C -0.12 -1.69 8.43 37.16 0.31 -1.37 16 29 C 0.12 1.79 5.96 -3.26 -0.02 1.77 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.33 6.57 -51.93 -0.34 -0.01 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.75 7.96 -51.93 -0.41 0.33 16 35 H 0.06 0.43 7.57 -51.93 -0.39 0.04 16 36 H 0.07 0.40 6.56 -51.93 -0.34 0.06 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.41 4.72 6.86 -40.82 -0.28 4.44 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.10 1.45 7.87 -51.93 -0.41 1.04 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.16 6.78 -51.93 -0.35 0.81 16 43 H 0.01 0.20 7.52 -51.93 -0.39 -0.19 16 44 H 0.12 3.18 5.44 -51.93 -0.28 2.90 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.02 0.38 7.38 -51.93 -0.38 -0.01 16 47 H 0.04 0.86 7.82 -51.93 -0.41 0.45 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.08 1.27 7.26 -51.93 -0.38 0.89 16 52 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 LS Contribution 403.43 15.07 6.08 6.08 Total: -1.00 -32.11 403.43 -9.03 -41.15 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.96 Total: 3.95 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -0.39 Total: 9.67 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.92 Total: -59.55 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.18 Total: -18.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.11 -9.03 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101464746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.669 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds