Wall clock time and date at job start Tue Mar 31 2020 20:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.53004 * 109.47236 * 65.00086 * 3 2 1 6 6 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 7 7 O 1.21276 * 119.99979 * 359.97438 * 6 3 2 8 8 N 1.34775 * 119.99964 * 179.97438 * 6 3 2 9 9 C 1.46502 * 119.99977 * 179.97438 * 8 6 3 10 10 C 1.50703 * 109.47195 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00187 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99921 * 180.02562 * 10 9 8 13 13 C 1.47220 * 126.70222 * 359.68138 * 12 10 9 14 14 C 1.54083 * 106.22431 * 148.67149 * 13 12 10 15 15 H 1.08995 * 112.45877 * 141.24521 * 14 13 12 16 16 C 1.55970 * 109.69760 * 267.41992 * 14 13 12 17 17 N 1.47222 * 106.44534 * 131.73493 * 16 14 13 18 18 C 1.36934 * 126.70304 * 148.26047 * 17 16 14 19 19 H 1.07997 * 119.99934 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99822 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99872 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46837 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47036 * 119.99672 * 22 20 18 25 25 H 1.48496 * 109.47109 * 239.99892 * 22 20 18 26 26 C 1.47216 * 106.59414 * 328.25975 * 17 16 14 27 27 C 1.53783 * 106.37911 * 31.27263 * 26 17 16 28 28 C 1.53000 * 111.85337 * 104.04073 * 27 26 17 29 29 C 1.47213 * 126.70312 * 179.97438 * 12 10 9 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09000 * 109.47403 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46917 * 300.00567 * 5 3 2 37 37 H 1.09004 * 109.46741 * 59.99889 * 5 3 2 38 38 H 0.97004 * 120.00146 * 0.02562 * 8 6 3 39 39 H 1.08994 * 109.47346 * 300.00871 * 9 8 6 40 40 H 1.09002 * 109.46745 * 60.00315 * 9 8 6 41 41 H 1.09000 * 110.07347 * 267.97850 * 13 12 10 42 42 H 1.08997 * 110.07251 * 29.52587 * 13 12 10 43 43 H 1.09003 * 110.42892 * 12.27503 * 16 14 13 44 44 H 1.08994 * 109.69340 * 250.79579 * 16 14 13 45 45 H 0.97000 * 119.99587 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.07536 * 272.04534 * 26 17 16 47 47 H 1.08999 * 110.07235 * 150.50702 * 26 17 16 48 48 H 1.09007 * 109.46820 * 182.05031 * 28 27 26 49 49 H 1.09003 * 109.47520 * 302.04813 * 28 27 26 50 50 H 1.09001 * 109.47144 * 62.05185 * 28 27 26 51 51 H 1.09002 * 110.07523 * 330.47635 * 29 12 10 52 52 H 1.09002 * 110.07658 * 92.01785 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4444 -0.1239 7 8 4.1450 0.3953 -0.2038 8 7 4.2147 2.6119 -0.1459 9 6 5.6749 2.6137 -0.2658 10 6 6.1771 4.0346 -0.2659 11 8 5.3927 4.9551 -0.1753 12 7 7.4980 4.2824 -0.3677 13 6 8.5744 3.2842 -0.4791 14 6 9.6827 3.9390 -1.3260 15 1 10.6817 3.6923 -0.9668 16 6 9.4789 3.5766 -2.8293 17 7 9.5852 4.8384 -3.5803 18 6 10.0660 4.9954 -4.8528 19 1 10.0947 5.9771 -5.3019 20 6 10.5156 3.8925 -5.5658 21 7 10.4801 2.6959 -5.0186 22 14 11.1708 4.1065 -7.3020 23 1 11.1038 5.5402 -7.6831 24 1 12.5807 3.6439 -7.3595 25 1 10.3482 3.3055 -8.2437 26 6 9.0736 5.8984 -2.6960 27 6 9.4023 5.4604 -1.2589 28 6 10.5894 6.2362 -0.6845 29 6 8.1466 5.6038 -0.3834 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.9982 3.1544 1.3072 36 1 0.5489 2.1251 1.3970 37 1 2.0699 1.5875 2.1492 38 1 3.7323 3.4510 -0.0816 39 1 6.1092 2.0752 0.5764 40 1 5.9635 2.1258 -1.1968 41 1 8.9555 3.0331 0.5108 42 1 8.2036 2.3880 -0.9763 43 1 8.4960 3.1312 -2.9834 44 1 10.2575 2.8842 -3.1490 45 1 10.7939 1.9252 -5.5170 46 1 7.9953 6.0000 -2.8187 47 1 9.5670 6.8439 -2.9211 48 1 10.8112 5.8709 0.3183 49 1 11.4605 6.0936 -1.3241 50 1 10.3422 7.2968 -0.6384 51 1 7.4737 6.3459 -0.8130 52 1 8.4278 5.8946 0.6288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101464746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:58 Heat of formation + Delta-G solvation = -75.606208 kcal Electronic energy + Delta-G solvation = -30329.986040 eV Core-core repulsion = 26328.775391 eV Total energy + Delta-G solvation = -4001.210649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80459 -41.00587 -39.70736 -36.70155 -36.43922 -35.62754 -34.55126 -32.56589 -31.64035 -31.03325 -29.31093 -27.90241 -26.89838 -26.67663 -25.91846 -24.13051 -22.65196 -22.03069 -21.11670 -20.54886 -20.04278 -18.84198 -18.51978 -17.72944 -17.37728 -17.06120 -16.78770 -16.58524 -16.12141 -15.84482 -15.55212 -15.41349 -15.09774 -14.96294 -14.75069 -14.41143 -14.02588 -13.88595 -13.83828 -13.51200 -13.43404 -13.33390 -13.22432 -12.99647 -12.97022 -12.74678 -12.71694 -12.57219 -12.52494 -12.29436 -11.98745 -11.82966 -11.72947 -11.59541 -11.55734 -11.49208 -11.16904 -11.10516 -10.88649 -10.80914 -10.31782 -9.76882 -8.93442 -7.76427 -5.24650 1.34138 1.45439 1.46156 1.54831 1.56131 1.61997 2.28045 2.47208 3.20816 3.29903 3.50273 3.58690 3.65781 3.84603 3.86581 3.92405 3.97465 4.18038 4.21475 4.23294 4.30177 4.39942 4.40147 4.52737 4.61660 4.62231 4.71139 4.73297 4.74438 4.76728 4.86320 4.92706 4.95770 5.00405 5.02901 5.11118 5.13807 5.19600 5.20660 5.24307 5.31698 5.36979 5.44869 5.50463 5.51802 5.59901 5.81722 6.35147 6.37220 6.41494 6.86994 7.09590 7.11429 7.75805 8.43014 9.21628 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.002718 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.760399 B =10298.750721 C =11724.694152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.105 4.105 4 H 0.114 0.886 5 C -0.142 4.142 6 C 0.514 3.486 7 O -0.580 6.580 8 N -0.713 5.713 9 C 0.108 3.892 10 C 0.529 3.471 11 O -0.572 6.572 12 N -0.607 5.607 13 C 0.110 3.890 14 C -0.108 4.108 15 H 0.107 0.893 16 C 0.148 3.852 17 N -0.618 5.618 18 C -0.233 4.233 19 H 0.079 0.921 20 C -0.065 4.065 21 N -0.944 5.944 22 Si 0.978 3.022 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.296 1.296 26 C 0.141 3.859 27 C -0.077 4.077 28 C -0.116 4.116 29 C 0.124 3.876 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.416 0.584 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.076 0.924 43 H -0.022 1.022 44 H 0.091 0.909 45 H 0.247 0.753 46 H 0.000 1.000 47 H 0.046 0.954 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.068 0.932 51 H 0.065 0.935 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.814 0.554 16.782 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.126 4.126 4 H 0.132 0.868 5 C -0.199 4.199 6 C 0.302 3.698 7 O -0.459 6.459 8 N -0.368 5.368 9 C -0.019 4.019 10 C 0.318 3.682 11 O -0.452 6.452 12 N -0.339 5.339 13 C -0.012 4.012 14 C -0.128 4.128 15 H 0.125 0.875 16 C 0.022 3.978 17 N -0.342 5.342 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.258 4.258 21 N -0.594 5.594 22 Si 0.807 3.193 23 H -0.193 1.193 24 H -0.215 1.215 25 H -0.223 1.223 26 C 0.015 3.985 27 C -0.079 4.079 28 C -0.173 4.173 29 C 0.001 3.999 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.255 0.745 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.094 0.906 43 H -0.004 1.004 44 H 0.108 0.892 45 H 0.058 0.942 46 H 0.018 0.982 47 H 0.064 0.936 48 H 0.100 0.900 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.792 0.204 16.575 20.938 hybrid contribution 0.313 0.215 -1.601 1.646 sum -12.479 0.420 14.974 19.497 Atomic orbital electron populations 1.21816 0.93376 1.02511 1.02861 1.21330 0.97072 0.93730 1.02154 1.21418 0.88536 1.00092 1.02556 0.86817 1.21844 1.03745 1.00156 0.94178 1.21412 0.91574 0.82368 0.74401 1.90693 1.71393 1.32675 1.51162 1.45787 1.06103 1.10253 1.74703 1.20969 0.82885 0.93212 1.04849 1.20234 0.80884 0.91241 0.75841 1.90646 1.54872 1.47020 1.52698 1.48438 1.05132 1.09750 1.70573 1.22361 0.86414 0.91285 1.01178 1.23411 0.99087 0.94231 0.96106 0.87518 1.22150 0.98185 0.89585 0.87849 1.44784 1.72500 1.04117 1.12751 1.19451 1.33096 0.94091 0.89591 0.90358 1.25569 1.02638 0.95111 1.02459 1.69864 1.53950 0.98483 1.37119 0.85004 0.77332 0.77562 0.79398 1.19340 1.21456 1.22286 1.21605 0.94839 0.92282 0.89805 1.22091 0.95696 0.95821 0.94321 1.21600 0.95124 0.99692 1.00883 1.22123 0.92641 0.84563 1.00541 0.92058 0.92126 0.91013 0.92229 0.93087 0.91589 0.88948 0.92512 0.74503 0.86897 0.89371 0.87367 0.90559 1.00441 0.89157 0.94245 0.98221 0.93555 0.89979 0.93483 0.91287 0.91689 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.67 71.98 0.70 -1.04 16 2 C -0.10 -1.83 4.75 30.59 0.15 -1.68 16 3 C -0.10 -1.78 2.72 -11.54 -0.03 -1.81 16 4 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 5 C -0.14 -1.75 8.84 71.98 0.64 -1.12 16 6 C 0.51 12.84 7.15 87.66 0.63 13.46 16 7 O -0.58 -19.00 15.92 -3.02 -0.05 -19.05 16 8 N -0.71 -17.23 5.42 -466.79 -2.53 -19.76 16 9 C 0.11 2.83 5.13 85.63 0.44 3.27 16 10 C 0.53 15.60 7.95 87.66 0.70 16.29 16 11 O -0.57 -19.29 15.90 -3.02 -0.05 -19.34 16 12 N -0.61 -17.24 3.32 -814.60 -2.70 -19.94 16 13 C 0.11 2.90 6.21 86.61 0.54 3.43 16 14 C -0.11 -3.55 3.80 -8.77 -0.03 -3.58 16 15 H 0.11 3.21 7.88 -2.39 -0.02 3.19 16 16 C 0.15 6.96 5.76 87.27 0.50 7.46 16 17 N -0.62 -31.39 3.39 -690.93 -2.34 -33.73 16 18 C -0.23 -13.00 10.34 84.03 0.87 -12.13 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 20 C -0.07 -3.66 5.49 84.86 0.47 -3.20 16 21 N -0.94 -55.20 10.08 21.65 0.22 -54.99 16 22 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 26 C 0.14 5.76 6.37 86.51 0.55 6.31 16 27 C -0.08 -2.37 1.08 -51.03 -0.06 -2.43 16 28 C -0.12 -2.82 8.43 71.98 0.61 -2.22 16 29 C 0.12 3.39 5.96 86.50 0.52 3.90 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.64 6.57 -2.39 -0.02 0.62 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.09 7.96 -2.39 -0.02 1.07 16 35 H 0.07 0.78 7.57 -2.39 -0.02 0.76 16 36 H 0.09 0.77 6.56 -2.39 -0.02 0.75 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.42 9.22 6.86 -92.71 -0.64 8.59 16 39 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.09 2.58 7.87 -2.39 -0.02 2.56 16 41 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.12 6.78 -2.39 -0.02 2.11 16 43 H -0.02 -1.15 7.52 -2.39 -0.02 -1.17 16 44 H 0.09 4.89 5.44 -2.39 -0.01 4.87 16 45 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 46 H 0.00 0.00 7.38 -2.39 -0.02 -0.02 16 47 H 0.05 1.83 7.82 -2.39 -0.02 1.82 16 48 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 49 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.06 1.99 7.26 -2.39 -0.02 1.98 16 52 H 0.10 2.09 7.87 -2.39 -0.02 2.07 16 Total: -1.00 -72.85 403.43 2.02 -70.83 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.27 Total: 23.51 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 7.17 Total: 24.93 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -7.36 Total: -128.42 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.10 Total: -38.38 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.85 2.02 -70.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101464746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.775 kcal (2) G-P(sol) polarization free energy of solvation -72.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds