Wall clock time and date at job start Tue Mar 31 2020 20:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47196 * 2 1 4 4 H 1.08999 * 109.47112 * 55.00516 * 3 2 1 5 5 C 1.52995 * 109.47368 * 295.00472 * 3 2 1 6 6 C 1.50700 * 109.46999 * 175.00011 * 3 2 1 7 7 O 1.21283 * 120.00135 * 0.02562 * 6 3 2 8 8 N 1.34784 * 119.99996 * 179.97438 * 6 3 2 9 9 C 1.46496 * 120.00076 * 180.02562 * 8 6 3 10 10 C 1.50697 * 109.47351 * 180.02562 * 9 8 6 11 11 O 1.21288 * 119.99760 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00469 * 180.02562 * 10 9 8 13 13 C 1.48675 * 126.63628 * 0.26342 * 12 10 9 14 14 C 1.53742 * 105.69078 * 211.40405 * 13 12 10 15 15 H 1.08993 * 112.28623 * 103.83307 * 14 13 12 16 16 C 1.54452 * 109.01569 * 228.93095 * 14 13 12 17 17 N 1.48338 * 104.32416 * 137.92094 * 16 14 13 18 18 C 1.36935 * 128.19637 * 138.15481 * 17 16 14 19 19 H 1.07993 * 120.00409 * 338.76291 * 18 17 16 20 20 C 1.38820 * 119.99829 * 158.75649 * 18 17 16 21 21 N 1.31614 * 119.99836 * 336.54065 * 20 18 17 22 22 Si 1.86802 * 119.99695 * 156.26000 * 20 18 17 23 23 H 1.48497 * 109.47125 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46758 * 120.00325 * 22 20 18 25 25 H 1.48499 * 109.47208 * 239.99921 * 22 20 18 26 26 C 1.48328 * 103.60426 * 318.41956 * 17 16 14 27 27 C 1.54089 * 104.50367 * 41.55098 * 26 17 16 28 28 C 1.52997 * 112.14949 * 97.17369 * 27 26 17 29 29 C 1.47192 * 126.70762 * 179.97438 * 12 10 9 30 30 H 1.09005 * 109.47411 * 59.99371 * 1 2 3 31 31 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46970 * 299.99612 * 1 2 3 33 33 H 1.08999 * 109.46964 * 240.00049 * 2 1 3 34 34 H 1.09000 * 109.47273 * 120.00188 * 2 1 3 35 35 H 1.08998 * 109.47498 * 59.99619 * 5 3 2 36 36 H 1.09001 * 109.47253 * 180.02562 * 5 3 2 37 37 H 1.09006 * 109.47347 * 299.99941 * 5 3 2 38 38 H 0.96994 * 119.99801 * 0.02562 * 8 6 3 39 39 H 1.09005 * 109.46930 * 59.99911 * 9 8 6 40 40 H 1.09007 * 109.47170 * 300.00105 * 9 8 6 41 41 H 1.09000 * 110.86319 * 92.16511 * 13 12 10 42 42 H 1.08998 * 109.98355 * 330.17639 * 13 12 10 43 43 H 1.09005 * 110.46228 * 19.21668 * 16 14 13 44 44 H 1.08991 * 110.57529 * 256.68770 * 16 14 13 45 45 H 0.96995 * 120.00301 * 353.97091 * 21 20 18 46 46 H 1.08996 * 110.46661 * 160.29378 * 26 17 16 47 47 H 1.09006 * 110.46258 * 282.87465 * 26 17 16 48 48 H 1.09000 * 109.46843 * 302.40650 * 28 27 26 49 49 H 1.08995 * 109.47431 * 62.40423 * 28 27 26 50 50 H 1.08993 * 109.47310 * 182.40642 * 28 27 26 51 51 H 1.08996 * 110.06457 * 29.38728 * 29 12 10 52 52 H 1.08998 * 110.06730 * 267.87020 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5419 1.4442 0.1238 7 8 4.1450 0.3950 0.2037 8 7 4.2150 2.6118 0.1448 9 6 5.6751 2.6135 0.2646 10 6 6.1775 4.0342 0.2647 11 8 5.3931 4.9548 0.1732 12 7 7.4983 4.2820 0.3655 13 6 8.5843 3.2727 0.4777 14 6 9.6827 3.9363 1.3244 15 1 9.6992 3.5611 2.3476 16 6 11.0423 3.7590 0.6133 17 7 11.7098 5.0750 0.7644 18 6 13.0211 5.3297 1.0657 19 1 13.6198 4.5743 1.5527 20 6 13.5808 6.5590 0.7452 21 7 13.0580 7.2893 -0.2168 22 14 15.0712 7.1800 1.6846 23 1 15.4596 6.1815 2.7129 24 1 16.2005 7.3842 0.7421 25 1 14.7388 8.4678 2.3451 26 6 10.6192 6.0498 0.5182 27 6 9.4019 5.4616 1.2575 28 6 9.2138 6.0817 2.6434 29 6 8.1471 5.6031 0.3799 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5489 2.1253 -1.3968 36 1 1.9989 3.1541 -1.3074 37 1 2.0697 1.5876 -2.1492 38 1 3.7327 3.4508 0.0805 39 1 6.1093 2.0742 -0.5773 40 1 5.9638 2.1263 1.1960 41 1 8.9759 3.0129 -0.5058 42 1 8.2126 2.3800 0.9806 43 1 10.8933 3.5262 -0.4412 44 1 11.6281 2.9770 1.0962 45 1 12.3378 6.9326 -0.7598 46 1 10.8793 7.0248 0.9302 47 1 10.4125 6.1289 -0.5492 48 1 10.1174 5.9316 3.2342 49 1 9.0201 7.1494 2.5406 50 1 8.3699 5.6059 3.1429 51 1 7.4736 6.3458 0.8074 52 1 8.4293 5.8923 -0.6324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101464747.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:01 Heat of formation + Delta-G solvation = -78.305707 kcal Electronic energy + Delta-G solvation = -29919.752713 eV Core-core repulsion = 25918.425005 eV Total energy + Delta-G solvation = -4001.327708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81613 -41.02779 -39.83028 -36.83608 -36.43075 -35.60944 -34.47674 -33.07247 -31.25520 -30.96334 -29.32954 -28.02260 -26.88225 -26.70423 -25.92751 -24.02067 -22.63545 -22.28509 -21.11634 -20.52012 -20.00822 -19.32128 -18.53944 -17.82619 -17.32327 -17.07916 -16.51697 -16.45369 -16.17351 -15.96459 -15.71819 -15.39698 -15.33202 -15.04245 -14.85494 -14.44470 -14.39311 -14.04446 -13.86006 -13.74834 -13.44999 -13.30162 -13.18795 -12.96886 -12.79951 -12.67625 -12.56638 -12.55849 -12.51717 -12.24001 -11.88492 -11.74057 -11.72112 -11.71000 -11.58408 -11.54095 -11.45338 -11.10834 -10.86795 -10.58735 -10.29630 -9.88543 -9.03905 -8.33432 -5.36825 1.34328 1.53440 1.56353 1.58286 1.66264 1.81303 2.25259 2.63042 3.10579 3.21435 3.34598 3.50529 3.65826 3.78945 3.81904 3.86275 3.98057 4.05556 4.13949 4.20817 4.24293 4.26894 4.39392 4.41505 4.52913 4.56489 4.62460 4.63895 4.69238 4.73288 4.79989 4.82136 4.88343 4.94760 4.96080 5.02806 5.04954 5.10966 5.12319 5.17155 5.23209 5.25247 5.30313 5.37703 5.38766 5.51218 5.67591 6.29353 6.32636 6.41503 6.83846 6.84698 7.12166 7.66343 8.35647 9.02182 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035381 B = 0.002006 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.204216 B =13957.646814 C =14254.473255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.105 4.105 4 H 0.118 0.882 5 C -0.145 4.145 6 C 0.517 3.483 7 O -0.578 6.578 8 N -0.715 5.715 9 C 0.109 3.891 10 C 0.529 3.471 11 O -0.573 6.573 12 N -0.608 5.608 13 C 0.109 3.891 14 C -0.097 4.097 15 H 0.102 0.898 16 C 0.127 3.873 17 N -0.623 5.623 18 C -0.329 4.329 19 H 0.062 0.938 20 C -0.080 4.080 21 N -0.951 5.951 22 Si 1.120 2.880 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.157 3.843 27 C -0.079 4.079 28 C -0.114 4.114 29 C 0.125 3.875 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.416 0.584 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.030 0.970 44 H 0.056 0.944 45 H 0.254 0.746 46 H 0.031 0.969 47 H 0.011 0.989 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.069 0.931 51 H 0.078 0.922 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.739 -11.974 2.015 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.126 4.126 4 H 0.135 0.865 5 C -0.202 4.202 6 C 0.305 3.695 7 O -0.457 6.457 8 N -0.370 5.370 9 C -0.018 4.018 10 C 0.318 3.682 11 O -0.453 6.453 12 N -0.340 5.340 13 C -0.013 4.013 14 C -0.117 4.117 15 H 0.121 0.879 16 C 0.002 3.998 17 N -0.348 5.348 18 C -0.458 4.458 19 H 0.080 0.920 20 C -0.276 4.276 21 N -0.594 5.594 22 Si 0.945 3.055 23 H -0.195 1.195 24 H -0.219 1.219 25 H -0.216 1.216 26 C 0.031 3.969 27 C -0.082 4.082 28 C -0.171 4.171 29 C 0.002 3.998 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.254 0.746 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.029 0.971 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.088 0.912 51 H 0.096 0.904 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.612 -10.970 2.236 25.232 hybrid contribution -0.498 -0.552 -0.613 0.963 sum -23.110 -11.522 1.623 25.874 Atomic orbital electron populations 1.21822 0.93600 1.02447 1.02810 1.21325 0.96907 0.93789 1.02222 1.21405 0.88903 0.99973 1.02306 0.86454 1.21854 1.03684 1.00166 0.94495 1.21309 0.91397 0.82385 0.74406 1.90692 1.71296 1.32554 1.51150 1.45813 1.06248 1.10217 1.74767 1.21025 0.82653 0.92465 1.05655 1.20415 0.80517 0.91584 0.75647 1.90680 1.54949 1.47289 1.52364 1.48865 1.05225 1.08850 1.71109 1.22692 0.85894 0.91675 1.01012 1.22969 0.94573 0.93800 1.00382 0.87931 1.22052 0.92208 0.88623 0.96927 1.45390 1.04799 1.01853 1.82762 1.20034 0.87010 1.03491 1.35242 0.92006 1.27161 1.05703 0.96286 0.98441 1.70830 1.28407 1.41852 1.18274 0.82780 0.72290 0.75683 0.74745 1.19527 1.21905 1.21622 1.21599 0.87115 0.93249 0.94974 1.22172 0.93481 0.96298 0.96241 1.21524 1.01325 1.00101 0.94151 1.21969 0.92999 0.85509 0.99314 0.91378 0.92216 0.91843 0.92541 0.92582 0.89115 0.91680 0.92835 0.74566 0.87496 0.87162 0.89715 0.86989 0.95237 0.92593 0.93603 0.95023 0.97101 0.93365 0.92804 0.91203 0.90394 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 71.98 0.70 -0.61 16 2 C -0.10 -1.43 4.75 30.59 0.15 -1.28 16 3 C -0.10 -1.35 2.72 -11.54 -0.03 -1.38 16 4 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 5 C -0.14 -1.45 8.84 71.98 0.64 -0.82 16 6 C 0.52 10.13 7.16 87.66 0.63 10.76 16 7 O -0.58 -15.47 15.92 -3.04 -0.05 -15.52 16 8 N -0.72 -13.21 5.42 -466.78 -2.53 -15.74 16 9 C 0.11 2.08 5.14 85.63 0.44 2.52 16 10 C 0.53 12.82 7.95 87.66 0.70 13.51 16 11 O -0.57 -17.09 15.90 -3.05 -0.05 -17.14 16 12 N -0.61 -15.12 3.35 -811.51 -2.72 -17.83 16 13 C 0.11 2.37 6.48 86.21 0.56 2.93 16 14 C -0.10 -2.77 3.70 -9.28 -0.03 -2.80 16 15 H 0.10 2.70 7.93 -2.39 -0.02 2.68 16 16 C 0.13 4.68 6.76 86.52 0.58 5.27 16 17 N -0.62 -30.06 3.22 -687.64 -2.21 -32.27 16 18 C -0.33 -18.05 10.22 84.04 0.86 -17.19 16 19 H 0.06 3.36 7.93 -2.91 -0.02 3.33 16 20 C -0.08 -4.54 5.15 84.86 0.44 -4.10 16 21 N -0.95 -57.88 12.77 21.65 0.28 -57.60 16 22 Si 1.12 50.62 29.98 68.60 2.06 52.68 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 26 C 0.16 6.95 4.32 86.40 0.37 7.32 16 27 C -0.08 -2.60 1.07 -50.78 -0.05 -2.66 16 28 C -0.11 -3.50 8.56 71.98 0.62 -2.89 16 29 C 0.13 3.72 6.23 86.51 0.54 4.26 16 30 H 0.07 0.46 6.57 -2.38 -0.02 0.45 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.93 7.96 -2.39 -0.02 0.91 16 35 H 0.09 0.59 6.56 -2.39 -0.02 0.57 16 36 H 0.06 0.64 7.56 -2.39 -0.02 0.62 16 37 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.42 7.20 6.85 -92.71 -0.64 6.57 16 39 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.11 1.89 7.88 -2.38 -0.02 1.87 16 41 H 0.08 1.81 7.11 -2.39 -0.02 1.80 16 42 H 0.11 1.72 7.35 -2.39 -0.02 1.70 16 43 H 0.03 1.08 7.18 -2.38 -0.02 1.06 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.25 15.67 6.44 -92.71 -0.60 15.07 16 46 H 0.03 1.61 7.13 -2.39 -0.02 1.59 16 47 H 0.01 0.52 6.84 -2.38 -0.02 0.51 16 48 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.08 2.34 7.61 -2.39 -0.02 2.32 16 52 H 0.06 1.97 7.15 -2.39 -0.02 1.96 16 Total: -1.00 -72.50 404.06 2.31 -70.20 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.44 Total: 20.38 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 7.09 Total: 12.85 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -7.18 Total: -123.45 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.10 Total: -32.65 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.06 Total: 52.68 kcal Total: -72.50 2.31 -70.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101464747.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.111 kcal (2) G-P(sol) polarization free energy of solvation -72.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds