Wall clock time and date at job start Tue Mar 31 2020 19:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47583 * 2 1 4 4 H 1.08999 * 115.54771 * 29.33118 * 3 2 1 5 5 C 1.53006 * 117.49823 * 243.62429 * 3 2 1 6 6 C 1.52999 * 59.99886 * 252.50950 * 5 3 2 7 7 H 1.08997 * 117.51808 * 107.48025 * 6 5 3 8 8 C 1.50706 * 117.49765 * 252.51411 * 6 5 3 9 9 O 1.21274 * 120.00042 * 68.34419 * 8 6 5 10 10 N 1.34777 * 119.99766 * 248.61954 * 8 6 5 11 11 C 1.46496 * 120.00266 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.28552 * 52.87180 * 12 11 10 14 14 C 1.54383 * 110.31943 * 290.63859 * 12 11 10 15 15 N 1.48561 * 104.59239 * 217.24830 * 14 12 11 16 16 C 1.46905 * 110.99788 * 159.03797 * 15 14 12 17 17 C 1.50706 * 109.46882 * 174.70893 * 16 15 14 18 18 O 1.21287 * 119.99921 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99685 * 180.02562 * 17 16 15 20 20 C 1.37104 * 119.99905 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99608 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00455 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99567 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00368 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47431 * 60.00222 * 24 22 20 26 26 H 1.48504 * 109.47330 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47193 * 300.00032 * 24 22 20 28 28 C 1.48562 * 104.21995 * 39.48551 * 15 14 12 29 29 C 1.54261 * 110.32309 * 175.00435 * 12 11 10 30 30 H 1.09005 * 110.32554 * 359.97438 * 29 12 11 31 31 C 1.52997 * 110.32044 * 237.89257 * 29 12 11 32 32 H 1.08996 * 109.47324 * 59.99520 * 1 2 3 33 33 H 1.08997 * 109.47558 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46441 * 299.99966 * 1 2 3 35 35 H 1.09005 * 109.46942 * 239.99458 * 2 1 3 36 36 H 1.09006 * 109.47152 * 120.00503 * 2 1 3 37 37 H 1.08998 * 117.49360 * 145.01764 * 5 3 2 38 38 H 1.09000 * 117.49560 * 359.97438 * 5 3 2 39 39 H 0.96999 * 120.00043 * 0.02562 * 10 8 6 40 40 H 1.09004 * 109.47212 * 300.00463 * 11 10 8 41 41 H 1.09000 * 109.46684 * 60.00307 * 11 10 8 42 42 H 1.09000 * 110.41767 * 336.02962 * 14 12 11 43 43 H 1.08999 * 110.40942 * 98.47888 * 14 12 11 44 44 H 1.08997 * 109.47392 * 294.70997 * 16 15 14 45 45 H 1.08996 * 109.46714 * 54.71479 * 16 15 14 46 46 H 0.96992 * 120.00511 * 359.97438 * 19 17 16 47 47 H 0.97001 * 119.99899 * 179.97438 * 23 22 20 48 48 H 1.09001 * 110.41621 * 201.73265 * 28 15 14 49 49 H 1.09008 * 110.50909 * 79.34678 * 28 15 14 50 50 H 1.09000 * 109.47556 * 60.00287 * 31 29 12 51 51 H 1.09006 * 109.47146 * 179.97438 * 31 29 12 52 52 H 1.09000 * 109.47482 * 299.99706 * 31 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8441 1.9074 -1.2159 6 6 3.5503 1.6577 0.1182 7 1 4.1803 0.7717 0.1964 8 6 4.0230 2.8619 0.8914 9 8 3.2160 3.6193 1.3871 10 7 5.3426 3.1000 1.0271 11 6 5.8022 4.2708 1.7782 12 6 7.3318 4.3074 1.7799 13 1 7.7125 4.2414 0.7607 14 6 7.8947 3.1560 2.6406 15 7 9.0835 3.7389 3.3143 16 6 9.4380 2.9699 4.5148 17 6 10.7192 3.5095 5.0967 18 8 11.2813 4.4430 4.5642 19 7 11.2403 2.9546 6.2089 20 6 12.4055 3.4458 6.7387 21 1 12.9056 4.2776 6.2649 22 6 12.9426 2.8742 7.8856 23 7 12.3332 1.8630 8.4629 24 14 14.5305 3.5429 8.6069 25 1 14.3464 4.9709 8.9704 26 1 14.8893 2.7652 9.8201 27 1 15.6187 3.4239 7.6035 28 6 8.6612 5.1179 3.6710 29 6 7.8360 5.5981 2.4579 30 1 6.9938 6.2057 2.7890 31 6 8.7179 6.3947 1.4943 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3632 0.5139 0.8901 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.7214 2.9426 -1.5344 38 1 3.0099 1.1856 -2.0156 39 1 5.9880 2.4966 0.6269 40 1 5.4179 5.1769 1.3097 41 1 5.4387 4.2099 2.8040 42 1 7.1580 2.8372 3.3780 43 1 8.1888 2.3179 2.0088 44 1 8.6393 3.0572 5.2513 45 1 9.5733 1.9218 4.2480 46 1 10.7906 2.2083 6.6350 47 1 12.7083 1.4636 9.2634 48 1 9.5324 5.7570 3.8151 49 1 8.0450 5.1081 4.5701 50 1 8.1407 6.6604 0.6087 51 1 9.0658 7.3029 1.9866 52 1 9.5752 5.7888 1.2010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102383806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:57 Heat of formation + Delta-G solvation = -61.711194 kcal Electronic energy + Delta-G solvation = -28804.276635 eV Core-core repulsion = 24803.668519 eV Total energy + Delta-G solvation = -4000.608116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.41390 -39.47056 -37.90250 -37.33178 -35.06325 -33.92314 -33.02937 -32.44694 -31.19112 -30.30874 -27.73211 -26.46043 -25.25430 -24.46597 -24.02851 -22.80513 -21.14071 -20.84029 -20.58875 -19.73790 -19.02821 -17.86657 -17.50699 -16.48482 -15.95138 -15.73332 -15.48044 -15.33699 -14.96381 -14.72985 -14.50156 -14.33345 -14.02206 -13.83537 -13.75848 -13.31445 -13.05832 -12.90209 -12.87835 -12.72574 -12.52307 -12.26016 -12.06310 -11.74553 -11.72145 -11.55461 -11.44481 -11.36860 -11.14982 -10.90799 -10.86054 -10.68533 -10.61989 -10.54748 -10.44780 -10.43489 -10.20383 -9.99839 -9.47179 -9.31168 -8.49460 -8.01412 -7.93106 -6.40537 -3.81363 2.23442 2.84181 3.20608 3.26166 3.30490 3.44060 3.91891 4.01185 4.19800 4.24531 4.35260 4.39888 4.51364 4.62355 4.67374 4.76527 4.80960 4.92605 5.02294 5.11950 5.17955 5.23208 5.24371 5.25962 5.31178 5.37775 5.48938 5.53516 5.55732 5.58325 5.61464 5.68136 5.73712 5.74184 5.76226 5.84670 5.92102 5.96943 6.01479 6.08288 6.13421 6.21718 6.28865 6.41721 6.50042 7.12756 7.22140 7.24645 7.55909 7.98059 8.07179 8.63211 9.19298 9.55845 10.07916 10.77248 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.001845 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.227145 B =15170.206785 C =16385.734316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.193 4.193 7 H 0.124 0.876 8 C 0.542 3.458 9 O -0.543 6.543 10 N -0.724 5.724 11 C 0.128 3.872 12 C -0.100 4.100 13 H 0.088 0.912 14 C 0.033 3.967 15 N -0.482 5.482 16 C 0.034 3.966 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.040 3.960 29 C -0.087 4.087 30 H 0.075 0.925 31 C -0.138 4.138 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.402 0.598 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.391 0.609 47 H 0.272 0.728 48 H 0.102 0.898 49 H 0.037 0.963 50 H 0.048 0.952 51 H 0.056 0.944 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.950 -2.918 -17.983 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.214 4.214 7 H 0.142 0.858 8 C 0.328 3.672 9 O -0.420 6.420 10 N -0.375 5.375 11 C 0.004 3.996 12 C -0.119 4.119 13 H 0.107 0.893 14 C -0.096 4.096 15 N -0.205 5.205 16 C -0.098 4.098 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.088 4.088 29 C -0.107 4.107 30 H 0.093 0.907 31 C -0.195 4.195 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.237 0.763 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.120 0.880 49 H 0.055 0.945 50 H 0.067 0.933 51 H 0.075 0.925 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.591 -1.847 -18.120 26.750 hybrid contribution 0.282 -0.648 1.219 1.409 sum -19.309 -2.494 -16.900 25.782 Atomic orbital electron populations 1.21740 0.95116 1.01717 1.02169 1.21165 0.96358 0.93548 1.02234 1.22488 0.91300 0.98815 1.00991 0.86426 1.23107 1.02008 1.03170 0.90289 1.22320 0.97929 0.98992 1.02162 0.85830 1.19672 0.82209 0.85586 0.79730 1.90700 1.53988 1.48595 1.48718 1.45958 1.06991 1.28783 1.55779 1.21537 0.93461 0.88016 0.96566 1.22244 0.92838 0.96029 1.00809 0.89339 1.23241 0.92097 0.97005 0.97214 1.65142 1.31036 1.01793 1.22552 1.22061 0.97276 0.98679 0.91759 1.19687 0.87371 0.86673 0.83207 1.90499 1.63054 1.30565 1.61973 1.41853 1.23214 1.31685 1.23483 1.19645 0.99778 1.15584 1.07820 0.87988 1.25252 0.99676 0.96246 0.96783 1.69608 1.40267 1.23402 1.21154 0.85919 0.81404 0.78735 0.78160 1.19943 1.21005 1.19910 1.23258 0.99197 0.91446 0.94854 1.21866 0.97883 0.94989 0.95916 0.90712 1.21783 0.99773 0.99907 0.98034 0.92529 0.92557 0.92460 0.91616 0.91322 0.88314 0.87747 0.76320 0.91254 0.91355 0.93850 0.90318 0.93326 0.89388 0.77543 0.91860 0.88001 0.94509 0.93298 0.92514 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.87 37.16 0.37 -0.44 16 2 C -0.10 -0.55 6.21 -26.73 -0.17 -0.71 16 3 C -0.12 -0.87 5.25 -90.62 -0.48 -1.34 16 4 H 0.12 1.09 7.60 -51.93 -0.39 0.69 16 5 C -0.15 -0.94 9.88 -26.73 -0.26 -1.20 16 6 C -0.19 -1.44 5.91 -91.77 -0.54 -1.98 16 7 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 8 C 0.54 5.67 7.61 -10.98 -0.08 5.59 16 9 O -0.54 -7.86 16.26 5.56 0.09 -7.77 16 10 N -0.72 -6.30 5.43 -60.29 -0.33 -6.63 16 11 C 0.13 1.26 4.79 -4.04 -0.02 1.24 16 12 C -0.10 -1.02 2.74 -89.23 -0.24 -1.26 16 13 H 0.09 0.84 7.71 -51.93 -0.40 0.44 16 14 C 0.03 0.39 5.84 -2.18 -0.01 0.38 16 15 N -0.48 -7.80 5.06 -231.40 -1.17 -8.97 16 16 C 0.03 0.61 5.30 -4.97 -0.03 0.58 16 17 C 0.45 10.51 7.59 -10.98 -0.08 10.42 16 18 O -0.58 -15.46 14.42 5.55 0.08 -15.38 16 19 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 24 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.04 0.63 5.35 -2.18 -0.01 0.62 16 29 C -0.09 -1.03 3.30 -89.24 -0.29 -1.32 16 30 H 0.07 0.80 7.71 -51.93 -0.40 0.40 16 31 C -0.14 -1.58 8.91 37.16 0.33 -1.25 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.31 7.88 -51.93 -0.41 -0.10 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.47 8.03 -51.93 -0.42 0.05 16 39 H 0.40 2.56 8.41 -40.82 -0.34 2.22 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.77 7.98 -51.93 -0.41 0.36 16 42 H 0.04 0.51 7.60 -51.93 -0.39 0.12 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 45 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 46 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.10 1.91 6.63 -51.93 -0.34 1.57 16 49 H 0.04 0.57 7.83 -51.92 -0.41 0.17 16 50 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 52 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 420.41 15.07 6.34 6.34 Total: -1.00 -33.03 420.41 -10.36 -43.39 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -9.24 Total: 9.96 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.77 Total: 1.32 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.83 Total: -53.94 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.17 Total: -23.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.03 -10.36 -43.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102383806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.324 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds