Wall clock time and date at job start Tue Mar 31 2020 19:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47583 * 2 1 4 4 H 1.08999 * 115.54771 * 29.33118 * 3 2 1 5 5 C 1.53006 * 117.49823 * 243.62429 * 3 2 1 6 6 C 1.52999 * 59.99886 * 252.50950 * 5 3 2 7 7 H 1.08997 * 117.51808 * 107.48025 * 6 5 3 8 8 C 1.50706 * 117.49765 * 252.51411 * 6 5 3 9 9 O 1.21274 * 120.00042 * 68.34419 * 8 6 5 10 10 N 1.34777 * 119.99766 * 248.61954 * 8 6 5 11 11 C 1.46496 * 120.00266 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.28552 * 52.87180 * 12 11 10 14 14 C 1.54383 * 110.31943 * 290.63859 * 12 11 10 15 15 N 1.48561 * 104.59239 * 217.24830 * 14 12 11 16 16 C 1.46905 * 110.99788 * 159.03797 * 15 14 12 17 17 C 1.50706 * 109.46882 * 174.70893 * 16 15 14 18 18 O 1.21287 * 119.99921 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99685 * 180.02562 * 17 16 15 20 20 C 1.37104 * 119.99905 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99608 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00455 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99567 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00368 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47431 * 60.00222 * 24 22 20 26 26 H 1.48504 * 109.47330 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47193 * 300.00032 * 24 22 20 28 28 C 1.48562 * 104.21995 * 39.48551 * 15 14 12 29 29 C 1.54261 * 110.32309 * 175.00435 * 12 11 10 30 30 H 1.09005 * 110.32554 * 359.97438 * 29 12 11 31 31 C 1.52997 * 110.32044 * 237.89257 * 29 12 11 32 32 H 1.08996 * 109.47324 * 59.99520 * 1 2 3 33 33 H 1.08997 * 109.47558 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46441 * 299.99966 * 1 2 3 35 35 H 1.09005 * 109.46942 * 239.99458 * 2 1 3 36 36 H 1.09006 * 109.47152 * 120.00503 * 2 1 3 37 37 H 1.08998 * 117.49360 * 145.01764 * 5 3 2 38 38 H 1.09000 * 117.49560 * 359.97438 * 5 3 2 39 39 H 0.96999 * 120.00043 * 0.02562 * 10 8 6 40 40 H 1.09004 * 109.47212 * 300.00463 * 11 10 8 41 41 H 1.09000 * 109.46684 * 60.00307 * 11 10 8 42 42 H 1.09000 * 110.41767 * 336.02962 * 14 12 11 43 43 H 1.08999 * 110.40942 * 98.47888 * 14 12 11 44 44 H 1.08997 * 109.47392 * 294.70997 * 16 15 14 45 45 H 1.08996 * 109.46714 * 54.71479 * 16 15 14 46 46 H 0.96992 * 120.00511 * 359.97438 * 19 17 16 47 47 H 0.97001 * 119.99899 * 179.97438 * 23 22 20 48 48 H 1.09001 * 110.41621 * 201.73265 * 28 15 14 49 49 H 1.09008 * 110.50909 * 79.34678 * 28 15 14 50 50 H 1.09000 * 109.47556 * 60.00287 * 31 29 12 51 51 H 1.09006 * 109.47146 * 179.97438 * 31 29 12 52 52 H 1.09000 * 109.47482 * 299.99706 * 31 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8441 1.9074 -1.2159 6 6 3.5503 1.6577 0.1182 7 1 4.1803 0.7717 0.1964 8 6 4.0230 2.8619 0.8914 9 8 3.2160 3.6193 1.3871 10 7 5.3426 3.1000 1.0271 11 6 5.8022 4.2708 1.7782 12 6 7.3318 4.3074 1.7799 13 1 7.7125 4.2414 0.7607 14 6 7.8947 3.1560 2.6406 15 7 9.0835 3.7389 3.3143 16 6 9.4380 2.9699 4.5148 17 6 10.7192 3.5095 5.0967 18 8 11.2813 4.4430 4.5642 19 7 11.2403 2.9546 6.2089 20 6 12.4055 3.4458 6.7387 21 1 12.9056 4.2776 6.2649 22 6 12.9426 2.8742 7.8856 23 7 12.3332 1.8630 8.4629 24 14 14.5305 3.5429 8.6069 25 1 14.3464 4.9709 8.9704 26 1 14.8893 2.7652 9.8201 27 1 15.6187 3.4239 7.6035 28 6 8.6612 5.1179 3.6710 29 6 7.8360 5.5981 2.4579 30 1 6.9938 6.2057 2.7890 31 6 8.7179 6.3947 1.4943 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3632 0.5139 0.8901 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.7214 2.9426 -1.5344 38 1 3.0099 1.1856 -2.0156 39 1 5.9880 2.4966 0.6269 40 1 5.4179 5.1769 1.3097 41 1 5.4387 4.2099 2.8040 42 1 7.1580 2.8372 3.3780 43 1 8.1888 2.3179 2.0088 44 1 8.6393 3.0572 5.2513 45 1 9.5733 1.9218 4.2480 46 1 10.7906 2.2083 6.6350 47 1 12.7083 1.4636 9.2634 48 1 9.5324 5.7570 3.8151 49 1 8.0450 5.1081 4.5701 50 1 8.1407 6.6604 0.6087 51 1 9.0658 7.3029 1.9866 52 1 9.5752 5.7888 1.2010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102383806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:55 Heat of formation + Delta-G solvation = -84.906219 kcal Electronic energy + Delta-G solvation = -28805.282447 eV Core-core repulsion = 24803.668519 eV Total energy + Delta-G solvation = -4001.613928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25914 -40.65818 -39.51758 -38.04075 -36.18216 -35.76108 -34.21430 -33.22596 -32.91961 -31.24178 -29.15293 -27.46203 -26.77615 -25.52053 -24.63979 -23.80990 -22.10387 -21.62808 -21.29246 -21.06424 -20.43075 -19.82740 -18.27479 -17.70275 -17.34663 -16.73213 -16.61925 -16.41566 -16.25494 -15.71600 -15.68086 -15.41624 -15.32425 -14.99460 -14.83634 -14.47902 -14.38143 -13.91676 -13.64737 -13.51426 -13.50406 -13.34099 -13.29399 -12.97385 -12.96565 -12.82957 -12.46471 -12.41330 -12.24939 -12.17424 -12.10193 -11.91636 -11.80668 -11.62023 -11.56350 -11.47201 -11.23530 -11.03050 -10.74469 -10.30984 -10.11399 -10.00773 -9.36262 -8.46460 -5.95189 1.39355 1.40938 1.48317 1.51929 2.05967 2.12754 2.28357 2.81834 2.87706 3.19981 3.36782 3.54448 3.59813 3.74052 3.79440 3.83625 3.89542 4.15957 4.22530 4.26976 4.29567 4.30901 4.38366 4.41055 4.49909 4.51609 4.57875 4.61327 4.64860 4.70230 4.78568 4.80228 4.91115 4.95395 4.99511 5.02131 5.15029 5.16821 5.17058 5.23767 5.27334 5.30529 5.40495 5.41650 5.47689 5.51270 5.84871 5.94502 6.09429 6.55093 6.60871 7.13079 7.24216 7.56643 8.12739 8.70836 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.001845 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.227145 B =15170.206785 C =16385.734316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.128 4.128 4 H 0.091 0.909 5 C -0.134 4.134 6 C -0.194 4.194 7 H 0.149 0.851 8 C 0.536 3.464 9 O -0.590 6.590 10 N -0.712 5.712 11 C 0.136 3.864 12 C -0.083 4.083 13 H 0.105 0.895 14 C 0.035 3.965 15 N -0.501 5.501 16 C 0.046 3.954 17 C 0.442 3.558 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.038 3.962 29 C -0.082 4.082 30 H 0.088 0.912 31 C -0.133 4.133 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.417 0.583 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.111 0.889 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.062 0.938 49 H 0.032 0.968 50 H 0.074 0.926 51 H 0.048 0.952 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.511 -4.417 -19.524 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.128 4.128 3 C -0.146 4.146 4 H 0.109 0.891 5 C -0.171 4.171 6 C -0.215 4.215 7 H 0.167 0.833 8 C 0.324 3.676 9 O -0.471 6.471 10 N -0.363 5.363 11 C 0.012 3.988 12 C -0.102 4.102 13 H 0.123 0.877 14 C -0.093 4.093 15 N -0.225 5.225 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.213 5.213 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.090 4.090 29 C -0.101 4.101 30 H 0.106 0.894 31 C -0.191 4.191 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.254 0.746 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.050 0.950 50 H 0.093 0.907 51 H 0.067 0.933 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.149 -3.380 -19.679 28.366 hybrid contribution 0.426 -0.143 1.676 1.735 sum -19.722 -3.523 -18.004 26.935 Atomic orbital electron populations 1.21751 0.95189 1.02181 1.01738 1.21156 0.96296 0.92397 1.02958 1.22469 0.91014 0.99314 1.01852 0.89100 1.23189 1.00347 1.03319 0.90266 1.22380 0.98170 0.98455 1.02495 0.83286 1.20228 0.82180 0.85912 0.79263 1.90682 1.55225 1.50426 1.50807 1.45850 1.06909 1.28489 1.55047 1.21356 0.92925 0.88556 0.95981 1.22110 0.92798 0.94239 1.01079 0.87685 1.23350 0.90576 0.97973 0.97367 1.65092 1.33670 1.02006 1.21750 1.21920 0.94280 0.99569 0.92760 1.20737 0.88587 0.85617 0.82139 1.90475 1.64602 1.32085 1.62776 1.41929 1.23010 1.32103 1.24292 1.19623 1.01397 1.16126 1.09118 0.90334 1.26031 1.02531 0.96254 0.96484 1.69671 1.41369 1.23808 1.21392 0.84990 0.77465 0.78198 0.77692 1.19786 1.19487 1.19677 1.23171 0.98022 0.91126 0.96655 1.21834 0.97680 0.96049 0.94546 0.89406 1.21738 0.99352 0.99165 0.98823 0.92367 0.91595 0.93567 0.89899 0.91473 0.89301 0.85121 0.74597 0.91353 0.92791 0.93329 0.88211 0.91833 0.87113 0.77125 0.91338 0.91966 0.94957 0.90725 0.93270 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.87 71.98 0.71 -0.75 16 2 C -0.09 -0.87 6.21 30.59 0.19 -0.68 16 3 C -0.13 -1.73 5.25 -10.79 -0.06 -1.79 16 4 H 0.09 1.74 7.60 -2.39 -0.02 1.72 16 5 C -0.13 -1.38 9.88 30.60 0.30 -1.08 16 6 C -0.19 -2.47 5.91 -11.54 -0.07 -2.53 16 7 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 8 C 0.54 10.48 7.61 87.66 0.67 11.15 16 9 O -0.59 -17.10 16.26 -3.01 -0.05 -17.15 16 10 N -0.71 -10.68 5.43 -463.06 -2.51 -13.19 16 11 C 0.14 2.42 4.79 86.38 0.41 2.83 16 12 C -0.08 -1.49 2.74 -9.90 -0.03 -1.52 16 13 H 0.10 1.62 7.71 -2.39 -0.02 1.60 16 14 C 0.03 0.74 5.84 86.45 0.50 1.24 16 15 N -0.50 -15.79 5.06 -886.02 -4.49 -20.27 16 16 C 0.05 1.62 5.30 85.56 0.45 2.07 16 17 C 0.44 21.28 7.59 87.66 0.66 21.95 16 18 O -0.61 -34.11 14.42 -3.05 -0.04 -34.16 16 19 N -0.58 -29.92 5.29 -306.99 -1.62 -31.54 16 20 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 23 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 24 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 C 0.04 1.21 5.35 86.45 0.46 1.67 16 29 C -0.08 -1.84 3.30 -9.90 -0.03 -1.87 16 30 H 0.09 1.77 7.71 -2.38 -0.02 1.76 16 31 C -0.13 -2.94 8.91 71.98 0.64 -2.30 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.52 7.88 -2.38 -0.02 0.50 16 36 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.13 0.68 8.03 -2.39 -0.02 0.66 16 39 H 0.42 3.86 8.41 -92.71 -0.78 3.08 16 40 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.05 1.15 7.98 -2.39 -0.02 1.13 16 42 H 0.05 1.01 7.60 -2.39 -0.02 1.00 16 43 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.06 2.04 7.88 -2.39 -0.02 2.02 16 45 H 0.11 3.37 8.13 -2.39 -0.02 3.35 16 46 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 47 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.06 2.46 6.63 -2.39 -0.02 2.44 16 49 H 0.03 1.02 7.83 -2.38 -0.02 1.00 16 50 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 52 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -74.37 420.41 -0.90 -75.27 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.60 Total: 35.73 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.11 Total: 9.85 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -8.34 Total: -114.85 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -0.09 Total: -51.31 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -74.37 -0.90 -75.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102383806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.639 kcal (2) G-P(sol) polarization free energy of solvation -74.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds