Wall clock time and date at job start Tue Mar 31 2020 20:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46806 * 2 1 4 4 H 1.09000 * 109.47541 * 54.90174 * 3 2 1 5 5 C 1.50701 * 109.47326 * 174.89884 * 3 2 1 6 6 O 1.21280 * 120.00304 * 95.15923 * 5 3 2 7 7 N 1.34783 * 119.99719 * 275.16788 * 5 3 2 8 8 C 1.48114 * 127.03116 * 184.77456 * 7 5 3 9 9 C 1.54594 * 103.42474 * 219.28318 * 8 7 5 10 10 H 1.09001 * 110.57578 * 81.16823 * 9 8 7 11 11 C 1.52996 * 110.98874 * 204.37403 * 9 8 7 12 12 N 1.46493 * 109.47520 * 288.64847 * 11 9 8 13 13 C 1.36929 * 120.00467 * 179.97438 * 12 11 9 14 14 H 1.08005 * 120.00425 * 0.02562 * 13 12 11 15 15 C 1.38814 * 120.00408 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00142 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99907 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47048 * 89.99865 * 17 15 13 19 19 H 1.48494 * 109.47282 * 209.99929 * 17 15 13 20 20 H 1.48501 * 109.47051 * 329.99875 * 17 15 13 21 21 C 1.54615 * 102.91049 * 322.87070 * 9 8 7 22 22 H 1.09005 * 110.32497 * 262.80415 * 21 9 8 23 23 C 1.53001 * 110.41661 * 140.63518 * 21 9 8 24 24 C 1.47476 * 127.03460 * 5.08630 * 7 5 3 25 25 N 1.46500 * 109.47171 * 294.89662 * 3 2 1 26 26 C 1.46764 * 124.34837 * 120.00156 * 25 3 2 27 27 C 1.54481 * 105.47336 * 197.01703 * 26 25 3 28 28 C 1.54637 * 101.76304 * 334.58251 * 27 26 25 29 29 C 1.34416 * 124.35072 * 300.00077 * 25 3 2 30 30 O 1.21282 * 124.94325 * 359.62695 * 29 25 3 31 31 H 1.08996 * 109.47353 * 300.00130 * 1 2 3 32 32 H 1.09001 * 109.47099 * 60.00031 * 1 2 3 33 33 H 1.08992 * 109.46728 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47353 * 239.99870 * 2 1 3 35 35 H 1.08993 * 109.46990 * 119.99648 * 2 1 3 36 36 H 1.09002 * 110.66446 * 337.77162 * 8 7 5 37 37 H 1.09003 * 110.66467 * 100.88039 * 8 7 5 38 38 H 1.08997 * 109.47294 * 48.65776 * 11 9 8 39 39 H 1.09008 * 109.46875 * 168.65099 * 11 9 8 40 40 H 0.97008 * 120.00091 * 0.02562 * 12 11 9 41 41 H 0.97007 * 119.99806 * 180.02562 * 16 15 13 42 42 H 1.09005 * 109.46881 * 302.87140 * 23 21 9 43 43 H 1.08997 * 109.46957 * 62.87012 * 23 21 9 44 44 H 1.08994 * 109.47361 * 182.87346 * 23 21 9 45 45 H 1.08999 * 109.91502 * 273.88196 * 24 7 5 46 46 H 1.09000 * 109.91787 * 34.96633 * 24 7 5 47 47 H 1.09004 * 110.24910 * 78.01612 * 26 25 3 48 48 H 1.09000 * 110.24545 * 316.01580 * 26 25 3 49 49 H 1.08998 * 110.96870 * 92.70122 * 27 26 25 50 50 H 1.08998 * 110.97241 * 216.46966 * 27 26 25 51 51 H 1.09003 * 110.48337 * 143.47705 * 28 27 26 52 52 H 1.08998 * 110.48331 * 265.98668 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9821 0.8408 5 6 3.5417 1.4445 0.1263 6 8 4.2338 1.5088 -0.8675 7 7 4.1156 1.3748 1.3439 8 6 5.5609 1.4639 1.6552 9 6 5.7529 0.4127 2.7723 10 1 5.8411 -0.5869 2.3467 11 6 6.9747 0.7432 3.6317 12 7 8.1955 0.4959 2.8607 13 6 9.4212 0.7233 3.4273 14 1 9.4880 1.0847 4.4429 15 6 10.5779 0.4895 2.6965 16 7 11.7560 0.7076 3.2414 17 14 10.4626 -0.1348 0.9397 18 1 10.4037 1.0193 0.0071 19 1 11.6561 -0.9619 0.6289 20 1 9.2363 -0.9582 0.7865 21 6 4.4517 0.5435 3.5971 22 1 4.6151 1.1854 4.4628 23 6 3.9621 -0.8354 4.0440 24 6 3.4335 1.1878 2.6380 25 7 1.6545 2.0967 -1.2529 26 6 0.8097 3.2940 -1.3361 27 6 0.3240 3.3547 -2.8013 28 6 1.4427 2.5806 -3.5365 29 6 2.0291 1.6776 -2.4738 30 8 2.7341 0.7152 -2.6919 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 6.1592 1.2083 0.7806 37 1 5.8154 2.4595 2.0188 38 1 6.9379 1.7916 3.9277 39 1 6.9736 0.1142 4.5220 40 1 8.1357 0.1717 1.9484 41 1 12.5644 0.5446 2.7305 42 1 3.8147 -1.4695 3.1698 43 1 4.7041 -1.2891 4.7010 44 1 3.0187 -0.7301 4.5796 45 1 3.1120 2.1523 3.0310 46 1 2.5716 0.5326 2.5122 47 1 1.3914 4.1836 -1.0944 48 1 -0.0406 3.2033 -0.6602 49 1 -0.6370 2.8530 -2.9147 50 1 0.2680 4.3854 -3.1514 51 1 1.0251 1.9894 -4.3516 52 1 2.1983 3.2694 -3.9143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107000994.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:07 Heat of formation + Delta-G solvation = -78.366066 kcal Electronic energy + Delta-G solvation = -30936.360734 eV Core-core repulsion = 26935.030408 eV Total energy + Delta-G solvation = -4001.330326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97841 -40.79046 -39.04103 -37.41357 -36.65041 -35.84600 -34.16809 -33.29545 -31.98840 -31.16735 -28.75793 -28.40364 -27.27303 -26.72722 -24.66520 -23.27598 -22.71722 -22.65941 -21.24869 -21.22894 -19.86968 -19.45626 -18.43481 -17.85175 -17.18133 -17.07296 -16.58595 -16.51819 -16.10628 -15.80898 -15.48857 -15.30095 -15.07471 -14.81130 -14.60919 -14.58190 -14.29703 -14.11645 -13.90255 -13.81909 -13.64399 -13.60893 -13.37770 -13.33643 -13.05833 -12.91441 -12.80193 -12.55415 -12.42427 -12.17280 -12.17029 -12.01897 -11.91169 -11.82769 -11.77563 -11.57096 -11.54422 -11.05979 -11.00552 -10.61722 -9.77797 -9.63930 -9.34233 -8.09081 -5.40650 1.29844 1.32750 1.37407 1.39691 1.58271 1.82828 2.21401 2.40021 3.21605 3.23619 3.43466 3.53343 3.59922 3.66412 3.75258 3.84216 3.89153 3.95403 4.06335 4.17177 4.23670 4.30103 4.33535 4.42036 4.47025 4.51626 4.63457 4.68090 4.68522 4.76130 4.76869 4.81146 4.84852 4.86336 5.00043 5.03818 5.04909 5.09855 5.13696 5.18885 5.20827 5.23282 5.33584 5.35126 5.51823 5.58953 5.71387 6.16142 6.18310 6.49556 7.01860 7.04943 7.30719 7.79461 7.95511 9.12485 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.003047 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.719966 B = 9187.852034 C =10395.110479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.131 4.131 3 C 0.156 3.844 4 H 0.150 0.850 5 C 0.503 3.497 6 O -0.573 6.573 7 N -0.620 5.620 8 C 0.113 3.887 9 C -0.099 4.099 10 H 0.065 0.935 11 C 0.168 3.832 12 N -0.764 5.764 13 C -0.228 4.228 14 H 0.067 0.933 15 C -0.056 4.056 16 N -0.979 5.979 17 Si 0.942 3.058 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.090 4.090 22 H 0.107 0.893 23 C -0.140 4.140 24 C 0.100 3.900 25 N -0.612 5.612 26 C 0.096 3.904 27 C -0.114 4.114 28 C -0.155 4.155 29 C 0.501 3.499 30 O -0.567 6.567 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.360 0.640 41 H 0.258 0.742 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.114 0.886 49 H 0.101 0.899 50 H 0.114 0.886 51 H 0.105 0.895 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.609 5.823 -4.138 38.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.169 4.169 3 C 0.050 3.950 4 H 0.168 0.832 5 C 0.291 3.709 6 O -0.450 6.450 7 N -0.355 5.355 8 C -0.011 4.011 9 C -0.118 4.118 10 H 0.084 0.916 11 C 0.042 3.958 12 N -0.409 5.409 13 C -0.359 4.359 14 H 0.085 0.915 15 C -0.248 4.248 16 N -0.630 5.630 17 Si 0.770 3.230 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.190 1.190 21 C -0.109 4.109 22 H 0.125 0.875 23 C -0.197 4.197 24 C -0.021 4.021 25 N -0.347 5.347 26 C -0.025 4.025 27 C -0.151 4.151 28 C -0.195 4.195 29 C 0.290 3.710 30 O -0.445 6.445 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.192 0.808 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.132 0.868 49 H 0.119 0.881 50 H 0.133 0.867 51 H 0.124 0.876 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -36.807 5.409 -4.641 37.490 hybrid contribution 1.719 -0.612 -1.323 2.254 sum -35.088 4.796 -5.964 35.913 Atomic orbital electron populations 1.21655 0.91608 1.02762 1.03140 1.21814 0.99228 0.93227 1.02674 1.20936 0.88310 0.97006 0.88793 0.83236 1.21552 0.92275 0.75793 0.81290 1.90782 1.65928 1.50673 1.37643 1.48956 1.08123 1.71595 1.06787 1.22305 0.81875 0.99645 0.97240 1.22399 0.95707 0.98166 0.95564 0.91606 1.20802 0.83170 0.98452 0.93412 1.42869 1.02479 1.81219 1.14310 1.19079 0.83665 1.35148 0.97989 0.91475 1.25327 0.94967 1.02893 1.01635 1.69841 0.97400 1.57297 1.38457 0.85614 0.77215 0.78420 0.81714 1.21188 1.21593 1.18979 1.22093 0.91630 0.99235 0.97930 0.87467 1.21839 1.02261 0.94411 1.01174 1.22601 0.95958 1.02654 0.80911 1.48231 1.51765 1.30202 1.04462 1.22475 0.94606 0.85697 0.99743 1.22621 0.97566 1.02863 0.92090 1.22378 1.00579 0.99121 0.97446 1.21668 0.78823 0.84592 0.85935 1.90708 1.38358 1.30892 1.84559 0.89484 0.92816 0.91998 0.94172 0.89482 0.94245 0.90338 0.94552 0.94418 0.80778 0.93272 0.93463 0.92847 0.89241 0.88189 0.87949 0.90892 0.86764 0.88075 0.86729 0.87628 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.80 71.98 0.71 -0.65 16 2 C -0.13 -2.35 5.25 30.60 0.16 -2.19 16 3 C 0.16 2.93 2.00 44.25 0.09 3.02 16 4 H 0.15 1.42 7.59 -2.39 -0.02 1.40 16 5 C 0.50 15.08 7.05 87.66 0.62 15.70 16 6 O -0.57 -24.53 14.18 18.06 0.26 -24.27 16 7 N -0.62 -16.03 3.29 -810.10 -2.67 -18.70 16 8 C 0.11 3.63 6.46 86.61 0.56 4.19 16 9 C -0.10 -2.90 2.60 -9.70 -0.03 -2.92 16 10 H 0.07 2.17 7.86 -2.39 -0.02 2.15 16 11 C 0.17 6.17 5.58 86.38 0.48 6.66 16 12 N -0.76 -37.27 5.32 -343.47 -1.83 -39.10 16 13 C -0.23 -13.35 10.47 84.04 0.88 -12.47 16 14 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 15 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 16 N -0.98 -64.41 13.97 21.65 0.30 -64.11 16 17 Si 0.94 49.41 27.74 68.60 1.90 51.31 16 18 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 19 H -0.29 -15.07 7.11 99.48 0.71 -14.37 16 20 H -0.26 -13.14 6.52 99.48 0.65 -12.49 16 21 C -0.09 -1.62 3.17 -9.90 -0.03 -1.65 16 22 H 0.11 1.66 7.85 -2.38 -0.02 1.64 16 23 C -0.14 -2.15 8.90 71.98 0.64 -1.50 16 24 C 0.10 1.48 6.07 86.53 0.53 2.00 16 25 N -0.61 -11.54 2.24 -798.20 -1.79 -13.33 16 26 C 0.10 0.76 7.30 86.83 0.63 1.40 16 27 C -0.11 -0.64 7.18 31.66 0.23 -0.41 16 28 C -0.16 -2.38 6.86 30.59 0.21 -2.17 16 29 C 0.50 13.30 6.79 87.90 0.60 13.89 16 30 O -0.57 -22.23 14.54 18.06 0.26 -21.97 16 31 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.58 7.76 -2.39 -0.02 0.56 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.04 1.12 6.64 -2.39 -0.02 1.10 16 35 H 0.09 1.35 6.88 -2.39 -0.02 1.33 16 36 H 0.04 1.60 7.82 -2.39 -0.02 1.58 16 37 H 0.08 2.47 7.95 -2.39 -0.02 2.45 16 38 H 0.04 1.32 8.00 -2.39 -0.02 1.30 16 39 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.36 17.74 5.53 -92.70 -0.51 17.23 16 41 H 0.26 16.23 8.31 -92.70 -0.77 15.46 16 42 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.10 0.98 6.01 -2.39 -0.01 0.96 16 47 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 50 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 51 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -93.77 405.12 3.50 -90.26 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.33 Total: 20.00 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.74 Total: 19.90 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -5.98 Total: -135.24 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: 0.52 Total: -46.24 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.90 Total: 51.31 kcal Total: -93.77 3.50 -90.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107000994.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.897 kcal (2) G-P(sol) polarization free energy of solvation -93.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds