Wall clock time and date at job start Tue Mar 31 2020 20:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47248 * 2 1 4 4 H 1.08998 * 109.46828 * 305.00475 * 3 2 1 5 5 C 1.50701 * 109.47618 * 184.99616 * 3 2 1 6 6 O 1.21274 * 120.00524 * 240.00473 * 5 3 2 7 7 N 1.34781 * 119.99435 * 60.00079 * 5 3 2 8 8 C 1.48113 * 127.02791 * 179.71030 * 7 5 3 9 9 C 1.54942 * 103.25098 * 219.55349 * 8 7 5 10 10 H 1.09004 * 110.74642 * 80.96295 * 9 8 7 11 11 C 1.53007 * 110.89505 * 204.21424 * 9 8 7 12 12 N 1.46499 * 109.47106 * 288.50456 * 11 9 8 13 13 C 1.36933 * 119.99935 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99686 * 180.02562 * 13 12 11 16 16 N 1.31614 * 120.00305 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99646 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47335 * 59.99598 * 17 15 13 19 19 H 1.48493 * 109.46905 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47093 * 299.99777 * 17 15 13 21 21 C 1.54620 * 102.84217 * 322.62061 * 9 8 7 22 22 H 1.08993 * 110.33147 * 262.95994 * 21 9 8 23 23 C 1.53001 * 110.41495 * 140.78109 * 21 9 8 24 24 C 1.47486 * 127.03579 * 0.02562 * 7 5 3 25 25 N 1.46510 * 109.46739 * 64.99892 * 3 2 1 26 26 C 1.46765 * 124.34459 * 239.72416 * 25 3 2 27 27 C 1.54665 * 105.37894 * 162.85871 * 26 25 3 28 28 C 1.54633 * 101.68483 * 25.76549 * 27 26 25 29 29 C 1.34415 * 124.35163 * 60.03150 * 25 3 2 30 30 O 1.21283 * 124.94138 * 0.37471 * 29 25 3 31 31 H 1.09005 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47327 * 299.99428 * 1 2 3 33 33 H 1.09000 * 109.47155 * 60.00219 * 1 2 3 34 34 H 1.08996 * 109.47342 * 240.00015 * 2 1 3 35 35 H 1.09008 * 109.47024 * 120.00071 * 2 1 3 36 36 H 1.08997 * 110.66402 * 337.99428 * 8 7 5 37 37 H 1.08998 * 110.66769 * 101.11840 * 8 7 5 38 38 H 1.08994 * 109.46861 * 48.50866 * 11 9 8 39 39 H 1.09006 * 109.46771 * 168.50927 * 11 9 8 40 40 H 0.97002 * 119.99709 * 0.02562 * 12 11 9 41 41 H 0.96996 * 119.99900 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.47456 * 302.88601 * 23 21 9 43 43 H 1.09006 * 109.46648 * 62.87550 * 23 21 9 44 44 H 1.08996 * 109.47142 * 182.87740 * 23 21 9 45 45 H 1.08999 * 109.91088 * 273.65318 * 24 7 5 46 46 H 1.08998 * 109.91112 * 34.92867 * 24 7 5 47 47 H 1.08999 * 110.24687 * 281.98682 * 26 25 3 48 48 H 1.08996 * 110.24629 * 43.98777 * 26 25 3 49 49 H 1.09002 * 111.19069 * 267.59663 * 27 26 25 50 50 H 1.08996 * 110.85512 * 143.79460 * 27 26 25 51 51 H 1.08998 * 110.48817 * 216.31130 * 28 27 26 52 52 H 1.08995 * 110.48198 * 93.66676 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1237 6 8 4.2216 1.9435 0.7478 7 7 4.1297 0.8912 -1.2031 8 6 5.5815 0.8122 -1.4857 9 6 5.6623 1.0864 -3.0085 10 1 5.6123 2.1562 -3.2115 11 6 6.9356 0.4829 -3.6049 12 7 8.0969 1.2596 -3.1640 13 6 9.3541 0.9039 -3.5739 14 1 9.4895 0.0511 -4.2226 15 6 10.4545 1.6395 -3.1557 16 7 10.2896 2.6785 -2.3647 17 14 12.1695 1.1547 -3.7155 18 1 12.2414 1.2127 -5.1976 19 1 13.1633 2.0930 -3.1350 20 1 12.4671 -0.2268 -3.2592 21 6 4.4076 0.3663 -3.5544 22 1 4.6713 -0.6229 -3.9284 23 6 3.7557 1.1960 -4.6623 24 6 3.4588 0.2464 -2.3473 25 7 1.6523 2.0974 1.2519 26 6 0.8122 3.2981 1.3326 27 6 0.3191 3.3560 2.7974 28 6 1.4368 2.5828 3.5349 29 6 2.0252 1.6793 2.4737 30 8 2.7304 0.7174 2.6935 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 6.1240 1.5757 -0.9282 37 1 5.9653 -0.1811 -1.2530 38 1 7.0400 -0.5490 -3.2698 39 1 6.8741 0.5072 -4.6929 40 1 7.9753 2.0253 -2.5811 41 1 11.0586 3.1922 -2.0722 42 1 3.5087 2.1856 -4.2777 43 1 4.4483 1.2938 -5.4984 44 1 2.8459 0.7000 -5.0003 45 1 3.2724 -0.8042 -2.1245 46 1 2.5191 0.7555 -2.5617 47 1 1.3984 4.1855 1.0937 48 1 -0.0359 3.2114 0.6535 49 1 -0.6419 2.8540 2.9098 50 1 0.2617 4.3868 3.1471 51 1 1.0183 1.9920 4.3497 52 1 2.1928 3.2719 3.9113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107000995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:11 Heat of formation + Delta-G solvation = -54.378391 kcal Electronic energy + Delta-G solvation = -30813.900717 eV Core-core repulsion = 26813.610575 eV Total energy + Delta-G solvation = -4000.290142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.03125 -39.70350 -37.74083 -36.44827 -35.19424 -34.53414 -32.74027 -31.39495 -31.27375 -29.31469 -27.80622 -27.49141 -26.35262 -25.08770 -23.22218 -22.50094 -22.17618 -21.24110 -20.19606 -19.89304 -18.73616 -17.50613 -17.06074 -16.81562 -16.29100 -15.92432 -15.56973 -15.11398 -14.61265 -14.55132 -14.26287 -14.12097 -13.83437 -13.55048 -13.46764 -13.35359 -13.22082 -13.13677 -12.98618 -12.82754 -12.68151 -12.47610 -12.12266 -12.04915 -11.85432 -11.77440 -11.47056 -11.41252 -11.25825 -11.22046 -11.04643 -10.81060 -10.51772 -10.45721 -10.33704 -10.01229 -9.83427 -9.69336 -9.63613 -8.85513 -8.79426 -8.52901 -6.89562 -5.72234 -3.01723 2.47099 2.67664 2.73968 3.19854 3.46874 3.50945 3.52465 4.10902 4.17400 4.36158 4.50255 4.55913 4.58332 4.61742 4.63990 4.78365 4.84995 4.89037 4.99423 5.12375 5.15272 5.26851 5.29213 5.37158 5.38295 5.42042 5.50648 5.52948 5.54633 5.60632 5.63829 5.67016 5.77008 5.78513 5.81668 5.94884 5.99305 6.09271 6.13519 6.19007 6.23905 6.32294 6.43581 6.53286 6.73269 6.86711 7.00091 7.65845 7.72263 8.13467 8.31017 8.45864 9.56907 10.14353 10.48582 11.50362 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.002705 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.316451 B =10347.970110 C =11459.322719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C 0.150 3.850 4 H 0.110 0.890 5 C 0.520 3.480 6 O -0.518 6.518 7 N -0.620 5.620 8 C 0.117 3.883 9 C -0.101 4.101 10 H 0.083 0.917 11 C 0.165 3.835 12 N -0.733 5.733 13 C -0.242 4.242 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.101 4.101 22 H 0.088 0.912 23 C -0.141 4.141 24 C 0.103 3.897 25 N -0.607 5.607 26 C 0.104 3.896 27 C -0.129 4.129 28 C -0.155 4.155 29 C 0.525 3.475 30 O -0.514 6.514 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.021 0.979 39 H 0.023 0.977 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.099 0.901 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.015 -0.898 3.739 29.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C 0.043 3.957 4 H 0.127 0.873 5 C 0.306 3.694 6 O -0.392 6.392 7 N -0.355 5.355 8 C -0.005 4.005 9 C -0.121 4.121 10 H 0.101 0.899 11 C 0.037 3.963 12 N -0.377 5.377 13 C -0.373 4.373 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.121 4.121 22 H 0.106 0.894 23 C -0.198 4.198 24 C -0.020 4.020 25 N -0.342 5.342 26 C -0.019 4.019 27 C -0.167 4.167 28 C -0.195 4.195 29 C 0.313 3.687 30 O -0.389 6.389 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.108 0.892 51 H 0.117 0.883 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -28.158 -1.205 4.315 28.512 hybrid contribution 1.032 0.124 -0.257 1.070 sum -27.126 -1.082 4.058 27.449 Atomic orbital electron populations 1.21696 0.94644 1.02010 1.01757 1.22020 0.96962 0.94369 1.04788 1.20760 0.92099 0.95603 0.87240 0.87252 1.20385 0.90036 0.78186 0.80825 1.90747 1.64923 1.44732 1.38794 1.48793 1.08845 1.57941 1.19956 1.22549 0.79669 1.02719 0.95557 1.22570 0.94719 1.00831 0.93946 0.89889 1.20623 0.85260 0.94251 0.96153 1.42366 1.01406 1.34599 1.59337 1.19159 0.83861 1.10033 1.24251 0.91240 1.24753 0.97921 0.97994 1.00241 1.69651 1.29656 1.20193 1.38502 0.86268 0.84422 0.77486 0.77999 1.21302 1.21703 1.21264 1.22106 0.94905 1.00659 0.94422 0.89380 1.21830 1.00229 0.99456 0.98287 1.22316 0.96214 0.97464 0.85985 1.47923 1.51969 1.29113 1.05240 1.22141 0.94158 0.87646 0.97968 1.22597 0.98380 1.01930 0.93792 1.22324 0.99492 0.99567 0.98133 1.20726 0.79334 0.84638 0.83994 1.90726 1.36291 1.28316 1.83521 0.92250 0.92645 0.92651 0.89745 0.89747 0.89453 0.90790 0.96119 0.95929 0.78217 0.93428 0.92707 0.91815 0.92748 0.91373 0.91037 0.90984 0.90359 0.89984 0.89153 0.88250 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.80 37.15 0.36 -0.65 16 2 C -0.14 -1.41 5.22 -26.74 -0.14 -1.55 16 3 C 0.15 1.68 2.05 -69.08 -0.14 1.54 16 4 H 0.11 0.92 7.84 -51.93 -0.41 0.51 16 5 C 0.52 8.31 6.95 -10.98 -0.08 8.24 16 6 O -0.52 -10.83 15.07 -9.65 -0.15 -10.97 16 7 N -0.62 -9.09 3.28 -169.77 -0.56 -9.65 16 8 C 0.12 2.03 6.46 -2.13 -0.01 2.01 16 9 C -0.10 -1.61 2.62 -88.74 -0.23 -1.84 16 10 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 11 C 0.17 3.25 5.58 -4.04 -0.02 3.23 16 12 N -0.73 -18.78 5.52 -59.91 -0.33 -19.11 16 13 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 17 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C -0.10 -1.16 3.17 -89.24 -0.28 -1.45 16 22 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 23 C -0.14 -1.38 8.90 37.16 0.33 -1.04 16 24 C 0.10 1.09 4.85 -2.98 -0.01 1.07 16 25 N -0.61 -6.71 2.08 -166.04 -0.34 -7.05 16 26 C 0.10 0.71 7.31 -3.02 -0.02 0.69 16 27 C -0.13 -0.68 7.19 -25.00 -0.18 -0.86 16 28 C -0.15 -1.34 6.86 -26.74 -0.18 -1.52 16 29 C 0.53 7.11 6.69 -10.86 -0.07 7.04 16 30 O -0.51 -9.45 15.34 -9.66 -0.15 -9.60 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.41 7.75 -51.93 -0.40 0.01 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.74 5.02 -51.93 -0.26 0.48 16 35 H 0.08 1.11 6.65 -51.92 -0.35 0.77 16 36 H 0.09 1.81 7.85 -51.93 -0.41 1.40 16 37 H 0.07 1.32 7.95 -51.93 -0.41 0.91 16 38 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.64 7.14 -51.93 -0.37 0.26 16 46 H 0.07 0.58 6.96 -51.93 -0.36 0.22 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -37.81 406.72 -9.76 -47.57 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -9.13 Total: 5.68 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.93 Total: 7.41 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.51 Total: -64.04 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.29 Total: -20.57 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.81 -9.76 -47.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107000995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.811 kcal (2) G-P(sol) polarization free energy of solvation -37.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds