Wall clock time and date at job start Tue Mar 31 2020 19:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47317 * 2 1 4 4 C 1.50701 * 109.47437 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99567 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99751 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99479 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46910 * 179.97438 * 7 6 4 9 9 C 1.54207 * 111.81321 * 299.30017 * 8 7 6 10 10 C 1.54850 * 104.31918 * 261.02895 * 9 8 7 11 11 C 1.54861 * 102.73822 * 321.94354 * 10 9 8 12 12 C 1.54160 * 104.27042 * 38.19201 * 11 10 9 13 13 H 1.09005 * 111.21597 * 97.47359 * 12 11 10 14 14 N 1.47820 * 109.58815 * 220.84991 * 12 11 10 15 15 C 1.46903 * 110.99720 * 328.72588 * 14 12 11 16 16 C 1.50697 * 109.46838 * 299.69630 * 15 14 12 17 17 O 1.21294 * 120.00641 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99871 * 180.02562 * 16 15 14 19 19 C 1.37105 * 120.00063 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99651 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99831 * 179.97438 * 19 18 16 22 22 N 1.31417 * 120.00135 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00004 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46945 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47013 * 119.99969 * 23 21 19 26 26 H 1.48493 * 109.47511 * 240.00343 * 23 21 19 27 27 C 1.49097 * 105.55214 * 88.46085 * 14 12 11 28 28 C 1.54542 * 112.58002 * 61.99587 * 8 7 6 29 29 H 1.09000 * 109.47534 * 299.99896 * 1 2 3 30 30 H 1.09003 * 109.47146 * 59.99977 * 1 2 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47044 * 239.99911 * 2 1 3 33 33 H 1.09003 * 109.47146 * 120.00023 * 2 1 3 34 34 H 1.09000 * 109.46734 * 59.99613 * 3 2 1 35 35 H 1.09003 * 109.47031 * 300.00093 * 3 2 1 36 36 H 0.96998 * 120.00507 * 359.97438 * 6 4 3 37 37 H 1.08999 * 109.47234 * 59.99784 * 7 6 4 38 38 H 1.09003 * 109.47108 * 299.99803 * 7 6 4 39 39 H 1.08993 * 110.46132 * 19.73983 * 9 8 7 40 40 H 1.08995 * 110.45638 * 142.32154 * 9 8 7 41 41 H 1.09001 * 110.75678 * 80.25052 * 10 9 8 42 42 H 1.09002 * 110.75710 * 203.44361 * 10 9 8 43 43 H 1.09004 * 110.47024 * 279.49556 * 11 10 9 44 44 H 1.08999 * 110.46980 * 156.89648 * 11 10 9 45 45 H 1.09001 * 109.47275 * 59.69754 * 15 14 12 46 46 H 1.09000 * 109.47033 * 179.70281 * 15 14 12 47 47 H 0.96998 * 119.99823 * 0.02562 * 18 16 15 48 48 H 0.97001 * 119.99875 * 180.02562 * 22 21 19 49 49 H 1.09007 * 111.15539 * 281.71835 * 27 14 12 50 50 H 1.09004 * 110.43010 * 158.41532 * 27 14 12 51 51 H 1.09005 * 110.70217 * 262.13184 * 28 8 7 52 52 H 1.09001 * 110.70701 * 25.18702 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2208 2.6098 0.0013 7 6 5.6858 2.6097 0.0013 8 6 6.1958 4.0523 0.0014 9 6 5.7263 4.8261 -1.2470 10 6 6.9408 4.7782 -2.2065 11 6 8.1433 4.9337 -1.2433 12 6 7.7411 4.1181 0.0015 13 1 8.1792 3.1202 -0.0222 14 7 8.1402 4.8487 1.2230 15 6 9.3517 5.6456 0.9875 16 6 10.4824 4.7339 0.5858 17 8 10.2973 3.5380 0.5033 18 7 11.6994 5.2473 0.3182 19 6 12.7280 4.4180 -0.0477 20 1 12.5629 3.3533 -0.1219 21 6 13.9826 4.9474 -0.3241 22 7 14.1834 6.2431 -0.2343 23 14 15.3842 3.8174 -0.8220 24 1 14.9023 2.4131 -0.8484 25 1 15.8715 4.1985 -2.1720 26 1 16.4929 3.9424 0.1579 27 6 6.9880 5.7356 1.5528 28 6 5.7619 4.8350 1.2614 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.7358 3.4498 0.0009 37 1 6.0492 2.0963 -0.8889 38 1 6.0491 2.0954 0.8911 39 1 4.8645 4.3346 -1.6982 40 1 5.4858 5.8572 -0.9880 41 1 6.9841 3.8216 -2.7272 42 1 6.9033 5.6026 -2.9186 43 1 8.2891 5.9818 -0.9816 44 1 9.0473 4.5227 -1.6927 45 1 9.1641 6.3649 0.1902 46 1 9.6202 6.1769 1.9005 47 1 11.8476 6.2036 0.3845 48 1 15.0591 6.6127 -0.4276 49 1 6.9767 6.6194 0.9148 50 1 7.0154 6.0196 2.6048 51 1 4.8796 5.4406 1.0539 52 1 5.5741 4.1547 2.0920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107261676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:54 Heat of formation + Delta-G solvation = -77.668493 kcal Electronic energy + Delta-G solvation = -30358.101805 eV Core-core repulsion = 26356.801728 eV Total energy + Delta-G solvation = -4001.300077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88308 -39.62279 -37.93377 -35.40710 -34.58549 -34.05698 -33.81387 -32.03740 -31.17918 -29.23110 -27.99116 -27.49509 -25.87585 -24.70785 -24.03697 -22.15371 -21.42818 -20.69078 -19.96396 -19.23955 -18.60853 -17.71613 -17.33816 -16.27830 -16.11708 -15.87645 -15.62901 -15.10239 -14.89454 -14.69722 -14.49173 -14.20791 -14.04981 -13.81139 -13.58106 -13.38179 -13.25262 -13.10670 -12.65081 -12.27146 -12.06129 -11.84908 -11.80368 -11.69797 -11.49575 -11.46455 -11.36403 -11.25879 -11.04336 -10.99990 -10.88946 -10.83014 -10.56834 -10.55875 -10.33318 -10.27599 -10.20823 -9.88859 -9.48205 -9.12615 -8.40650 -7.96550 -7.86311 -6.40244 -3.80710 2.54396 3.04849 3.17302 3.27926 3.35319 3.93060 4.06030 4.24806 4.38476 4.48903 4.54066 4.58926 4.65199 4.69310 5.02594 5.06690 5.10135 5.12697 5.16195 5.21571 5.26140 5.29160 5.31539 5.42233 5.47327 5.49498 5.57564 5.64815 5.71849 5.75697 5.77776 5.84762 5.87042 5.90598 5.94848 5.96708 5.99269 6.02137 6.10273 6.14082 6.27057 6.30445 6.37546 6.47919 6.71105 7.22632 7.27951 7.37352 7.57058 8.08318 8.12417 8.63714 9.20274 9.56522 10.08437 10.77619 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.002322 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.682442 B =12053.118701 C =12671.412215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.507 3.493 5 O -0.540 6.540 6 N -0.728 5.728 7 C 0.142 3.858 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.153 4.153 12 C 0.091 3.909 13 H 0.113 0.887 14 N -0.484 5.484 15 C 0.026 3.974 16 C 0.447 3.553 17 O -0.578 6.578 18 N -0.566 5.566 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.030 3.970 28 C -0.111 4.111 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.398 0.602 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.043 0.957 50 H 0.080 0.920 51 H 0.068 0.932 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.351 0.882 -0.518 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.180 4.180 4 C 0.293 3.707 5 O -0.416 6.416 6 N -0.380 5.380 7 C 0.019 3.981 8 C -0.086 4.086 9 C -0.153 4.153 10 C -0.159 4.159 11 C -0.192 4.192 12 C -0.018 4.018 13 H 0.131 0.869 14 N -0.207 5.207 15 C -0.106 4.106 16 C 0.233 3.767 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.425 4.425 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.098 4.098 28 C -0.149 4.149 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.232 0.768 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.062 0.938 50 H 0.098 0.902 51 H 0.087 0.913 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.699 -0.957 -0.155 24.718 hybrid contribution 0.666 1.362 -0.858 1.742 sum -24.033 0.405 -1.013 24.058 Atomic orbital electron populations 1.21794 0.95553 1.01959 1.01690 1.21280 0.95147 0.94751 1.03669 1.21719 0.91935 1.00192 1.04199 1.20759 0.90262 0.83658 0.75990 1.90731 1.70540 1.31307 1.49051 1.46075 1.07736 1.08489 1.75697 1.21245 0.78619 0.95399 1.02867 1.22278 0.96750 0.93939 0.95602 1.22541 0.98126 0.99629 0.95034 1.22443 0.94511 1.01664 0.97310 1.23032 0.98928 1.00668 0.96553 1.22973 0.90673 1.00389 0.87755 0.86942 1.65086 1.01289 1.22313 1.31963 1.22224 0.91347 0.95766 1.01229 1.19664 0.83813 0.89010 0.84251 1.90504 1.82867 1.15565 1.57201 1.41858 1.08162 1.10091 1.60131 1.19736 0.88048 0.92655 1.42108 0.87892 1.25246 0.98773 0.96274 0.97714 1.69622 1.24277 1.10883 1.49634 0.85822 0.80482 0.80214 0.77973 1.19227 1.20837 1.20781 1.23363 0.90646 0.94758 1.01069 1.22563 0.97068 0.98025 0.97231 0.92721 0.92740 0.92422 0.91232 0.91193 0.89035 0.89086 0.76790 0.91201 0.90728 0.91704 0.91399 0.91469 0.91805 0.91236 0.90415 0.92399 0.89465 0.77587 0.92000 0.93849 0.90191 0.91334 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.11 -0.87 5.22 -26.73 -0.14 -1.01 16 3 C -0.14 -0.97 5.70 -27.88 -0.16 -1.13 16 4 C 0.51 5.54 7.83 -10.98 -0.09 5.45 16 5 O -0.54 -8.47 15.98 5.56 0.09 -8.38 16 6 N -0.73 -6.83 4.88 -60.29 -0.29 -7.13 16 7 C 0.14 1.74 4.58 -4.04 -0.02 1.72 16 8 C -0.08 -0.97 0.57 -152.19 -0.09 -1.05 16 9 C -0.12 -1.13 5.56 -25.13 -0.14 -1.27 16 10 C -0.12 -1.44 6.90 -24.77 -0.17 -1.61 16 11 C -0.15 -2.33 4.78 -25.14 -0.12 -2.45 16 12 C 0.09 1.43 2.46 -65.73 -0.16 1.27 16 13 H 0.11 2.20 6.58 -51.93 -0.34 1.86 16 14 N -0.48 -7.86 5.17 -222.45 -1.15 -9.01 16 15 C 0.03 0.46 4.90 -4.98 -0.02 0.43 16 16 C 0.45 10.36 6.55 -10.99 -0.07 10.29 16 17 O -0.58 -15.25 13.84 5.55 0.08 -15.17 16 18 N -0.57 -14.20 5.29 -10.96 -0.06 -14.26 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 23 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 C 0.03 0.36 6.36 -1.60 -0.01 0.35 16 28 C -0.11 -1.12 5.51 -24.92 -0.14 -1.26 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 2.59 7.67 -40.82 -0.31 2.28 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.55 7.14 -51.93 -0.37 0.18 16 40 H 0.07 0.60 7.53 -51.93 -0.39 0.21 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.03 5.43 -51.93 -0.28 0.75 16 44 H 0.08 1.44 7.73 -51.93 -0.40 1.04 16 45 H 0.06 0.93 5.45 -51.93 -0.28 0.65 16 46 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.04 0.49 7.95 -51.93 -0.41 0.07 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.07 0.52 7.64 -51.93 -0.40 0.12 16 52 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 LS Contribution 401.31 15.07 6.05 6.05 Total: -1.00 -32.74 401.31 -9.72 -42.46 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -8.93 Total: 11.74 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.20 Total: 1.34 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.78 Total: -54.21 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.74 -9.72 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107261676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.210 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds