Wall clock time and date at job start Tue Mar 31 2020 19:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47317 * 2 1 4 4 C 1.50701 * 109.47437 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99567 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99751 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99479 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46910 * 179.97438 * 7 6 4 9 9 C 1.54207 * 111.81321 * 299.30017 * 8 7 6 10 10 C 1.54850 * 104.31918 * 261.02895 * 9 8 7 11 11 C 1.54861 * 102.73822 * 321.94354 * 10 9 8 12 12 C 1.54160 * 104.27042 * 38.19201 * 11 10 9 13 13 H 1.09005 * 111.21597 * 97.47359 * 12 11 10 14 14 N 1.47820 * 109.58815 * 220.84991 * 12 11 10 15 15 C 1.46903 * 110.99720 * 328.72588 * 14 12 11 16 16 C 1.50697 * 109.46838 * 299.69630 * 15 14 12 17 17 O 1.21294 * 120.00641 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99871 * 180.02562 * 16 15 14 19 19 C 1.37105 * 120.00063 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99651 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99831 * 179.97438 * 19 18 16 22 22 N 1.31417 * 120.00135 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00004 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46945 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47013 * 119.99969 * 23 21 19 26 26 H 1.48493 * 109.47511 * 240.00343 * 23 21 19 27 27 C 1.49097 * 105.55214 * 88.46085 * 14 12 11 28 28 C 1.54542 * 112.58002 * 61.99587 * 8 7 6 29 29 H 1.09000 * 109.47534 * 299.99896 * 1 2 3 30 30 H 1.09003 * 109.47146 * 59.99977 * 1 2 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47044 * 239.99911 * 2 1 3 33 33 H 1.09003 * 109.47146 * 120.00023 * 2 1 3 34 34 H 1.09000 * 109.46734 * 59.99613 * 3 2 1 35 35 H 1.09003 * 109.47031 * 300.00093 * 3 2 1 36 36 H 0.96998 * 120.00507 * 359.97438 * 6 4 3 37 37 H 1.08999 * 109.47234 * 59.99784 * 7 6 4 38 38 H 1.09003 * 109.47108 * 299.99803 * 7 6 4 39 39 H 1.08993 * 110.46132 * 19.73983 * 9 8 7 40 40 H 1.08995 * 110.45638 * 142.32154 * 9 8 7 41 41 H 1.09001 * 110.75678 * 80.25052 * 10 9 8 42 42 H 1.09002 * 110.75710 * 203.44361 * 10 9 8 43 43 H 1.09004 * 110.47024 * 279.49556 * 11 10 9 44 44 H 1.08999 * 110.46980 * 156.89648 * 11 10 9 45 45 H 1.09001 * 109.47275 * 59.69754 * 15 14 12 46 46 H 1.09000 * 109.47033 * 179.70281 * 15 14 12 47 47 H 0.96998 * 119.99823 * 0.02562 * 18 16 15 48 48 H 0.97001 * 119.99875 * 180.02562 * 22 21 19 49 49 H 1.09007 * 111.15539 * 281.71835 * 27 14 12 50 50 H 1.09004 * 110.43010 * 158.41532 * 27 14 12 51 51 H 1.09005 * 110.70217 * 262.13184 * 28 8 7 52 52 H 1.09001 * 110.70701 * 25.18702 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2208 2.6098 0.0013 7 6 5.6858 2.6097 0.0013 8 6 6.1958 4.0523 0.0014 9 6 5.7263 4.8261 -1.2470 10 6 6.9408 4.7782 -2.2065 11 6 8.1433 4.9337 -1.2433 12 6 7.7411 4.1181 0.0015 13 1 8.1792 3.1202 -0.0222 14 7 8.1402 4.8487 1.2230 15 6 9.3517 5.6456 0.9875 16 6 10.4824 4.7339 0.5858 17 8 10.2973 3.5380 0.5033 18 7 11.6994 5.2473 0.3182 19 6 12.7280 4.4180 -0.0477 20 1 12.5629 3.3533 -0.1219 21 6 13.9826 4.9474 -0.3241 22 7 14.1834 6.2431 -0.2343 23 14 15.3842 3.8174 -0.8220 24 1 14.9023 2.4131 -0.8484 25 1 15.8715 4.1985 -2.1720 26 1 16.4929 3.9424 0.1579 27 6 6.9880 5.7356 1.5528 28 6 5.7619 4.8350 1.2614 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.7358 3.4498 0.0009 37 1 6.0492 2.0963 -0.8889 38 1 6.0491 2.0954 0.8911 39 1 4.8645 4.3346 -1.6982 40 1 5.4858 5.8572 -0.9880 41 1 6.9841 3.8216 -2.7272 42 1 6.9033 5.6026 -2.9186 43 1 8.2891 5.9818 -0.9816 44 1 9.0473 4.5227 -1.6927 45 1 9.1641 6.3649 0.1902 46 1 9.6202 6.1769 1.9005 47 1 11.8476 6.2036 0.3845 48 1 15.0591 6.6127 -0.4276 49 1 6.9767 6.6194 0.9148 50 1 7.0154 6.0196 2.6048 51 1 4.8796 5.4406 1.0539 52 1 5.5741 4.1547 2.0920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107261676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:53 Heat of formation + Delta-G solvation = -102.257636 kcal Electronic energy + Delta-G solvation = -30359.168070 eV Core-core repulsion = 26356.801728 eV Total energy + Delta-G solvation = -4002.366342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99854 -40.63093 -39.69371 -36.56186 -35.85130 -35.24101 -35.02886 -33.35536 -33.01357 -30.11273 -29.20064 -28.38960 -27.31424 -25.95679 -25.45213 -22.84598 -22.39805 -21.77444 -21.15185 -20.62928 -20.05061 -19.54656 -18.23467 -17.55388 -17.27496 -16.91068 -16.75956 -16.51270 -16.23918 -16.04727 -15.71560 -15.44933 -15.24433 -15.00586 -14.75735 -14.49379 -14.44950 -14.04162 -13.93652 -13.56176 -13.09398 -13.01867 -12.86562 -12.76940 -12.72004 -12.65823 -12.49879 -12.41488 -12.31946 -12.15072 -12.01881 -11.93944 -11.88562 -11.69908 -11.60546 -11.51863 -11.45364 -11.27149 -10.84086 -10.24493 -10.08067 -10.00684 -9.19541 -8.47921 -5.95866 1.33531 1.38432 1.52425 1.69191 2.06305 2.20921 2.27006 2.89080 3.18862 3.30294 3.38899 3.58011 3.69804 3.85819 4.03880 4.05981 4.10150 4.14750 4.18350 4.26860 4.30825 4.38264 4.47899 4.53050 4.58729 4.61697 4.67205 4.73784 4.75061 4.78482 4.79842 4.82336 4.95125 4.98656 5.02735 5.04547 5.11738 5.22062 5.25881 5.30278 5.31807 5.35596 5.39666 5.41394 5.46594 5.51427 5.90118 6.03554 6.14621 6.60653 6.61753 7.13116 7.32896 7.56556 8.13643 8.69802 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.002322 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.682442 B =12053.118701 C =12671.412215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.501 3.499 5 O -0.598 6.598 6 N -0.709 5.709 7 C 0.151 3.849 8 C -0.072 4.072 9 C -0.102 4.102 10 C -0.118 4.118 11 C -0.150 4.150 12 C 0.087 3.913 13 H 0.055 0.945 14 N -0.511 5.511 15 C 0.040 3.960 16 C 0.445 3.555 17 O -0.616 6.616 18 N -0.576 5.576 19 C -0.329 4.329 20 H 0.074 0.926 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.277 1.277 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.029 3.971 28 C -0.101 4.101 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.419 0.581 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.027 0.973 45 H 0.079 0.921 46 H 0.105 0.895 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.064 0.936 50 H 0.091 0.909 51 H 0.114 0.886 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.628 3.776 -0.562 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.168 4.168 4 C 0.289 3.711 5 O -0.479 6.479 6 N -0.362 5.362 7 C 0.027 3.973 8 C -0.073 4.073 9 C -0.139 4.139 10 C -0.156 4.156 11 C -0.189 4.189 12 C -0.023 4.023 13 H 0.073 0.927 14 N -0.235 5.235 15 C -0.091 4.091 16 C 0.233 3.767 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.459 4.459 20 H 0.092 0.908 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.202 1.202 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.098 4.098 28 C -0.139 4.139 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.257 0.743 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.046 0.954 45 H 0.097 0.903 46 H 0.123 0.877 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.082 0.918 50 H 0.110 0.890 51 H 0.133 0.867 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -28.014 2.006 -0.191 28.086 hybrid contribution 1.708 0.393 -0.817 1.934 sum -26.306 2.398 -1.008 26.434 Atomic orbital electron populations 1.21747 0.93403 1.02279 1.02922 1.21276 0.96921 0.95281 1.01691 1.21759 0.88150 0.99970 1.06967 1.21630 0.92073 0.82905 0.74477 1.90717 1.72005 1.33474 1.51664 1.45851 1.06233 1.09308 1.74767 1.20892 0.80548 0.95717 1.00189 1.22112 0.93349 0.93744 0.98116 1.22535 0.97407 1.01096 0.92895 1.22436 0.93984 1.01799 0.97407 1.22919 0.98436 1.00395 0.97104 1.22765 0.93711 0.97701 0.88079 0.92693 1.64990 1.02376 1.23808 1.32290 1.22080 0.89920 0.94655 1.02477 1.20744 0.84446 0.89347 0.82201 1.90494 1.83610 1.17885 1.58237 1.41911 1.08527 1.09957 1.60953 1.19623 0.89805 0.91952 1.44478 0.90778 1.25978 1.00365 0.97802 0.97087 1.69674 1.25154 1.11773 1.49477 0.84920 0.77594 0.77806 0.78310 1.20202 1.19490 1.19503 1.23516 0.89142 0.94932 1.02183 1.22600 0.97866 0.97725 0.95714 0.91451 0.91419 0.92706 0.93303 0.93353 0.86096 0.86036 0.74346 0.93762 0.93974 0.89485 0.88446 0.92795 0.89839 0.90310 0.95394 0.90312 0.87665 0.77118 0.91351 0.91800 0.89037 0.86746 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.11 -1.68 5.22 30.59 0.16 -1.52 16 3 C -0.13 -1.42 5.70 29.85 0.17 -1.25 16 4 C 0.50 10.50 7.83 87.66 0.69 11.19 16 5 O -0.60 -19.71 15.98 -3.04 -0.05 -19.76 16 6 N -0.71 -11.97 4.88 -463.04 -2.26 -14.22 16 7 C 0.15 3.79 4.58 86.38 0.40 4.19 16 8 C -0.07 -1.55 0.57 -50.68 -0.03 -1.58 16 9 C -0.10 -1.60 5.56 31.63 0.18 -1.43 16 10 C -0.12 -2.67 6.90 31.86 0.22 -2.45 16 11 C -0.15 -4.67 4.78 31.62 0.15 -4.52 16 12 C 0.09 2.83 2.46 45.70 0.11 2.94 16 13 H 0.05 2.41 6.58 -2.38 -0.02 2.40 16 14 N -0.51 -16.53 5.17 -857.69 -4.43 -20.97 16 15 C 0.04 1.41 4.90 85.56 0.42 1.82 16 16 C 0.45 21.72 6.55 87.66 0.57 22.29 16 17 O -0.62 -35.17 13.84 -3.07 -0.04 -35.21 16 18 N -0.58 -30.24 5.29 -306.98 -1.62 -31.86 16 19 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 20 H 0.07 4.67 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 22 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 23 Si 0.99 44.25 29.55 68.60 2.03 46.28 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 C 0.03 0.60 6.36 86.53 0.55 1.15 16 28 C -0.10 -1.66 5.51 31.77 0.18 -1.49 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 34 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.42 3.59 7.67 -92.71 -0.71 2.88 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.06 7.14 -2.39 -0.02 1.04 16 40 H 0.10 1.08 7.53 -2.39 -0.02 1.06 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 2.26 5.43 -2.38 -0.01 2.25 16 44 H 0.03 1.11 7.73 -2.39 -0.02 1.10 16 45 H 0.08 2.45 5.45 -2.39 -0.01 2.43 16 46 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 47 H 0.40 19.67 7.90 -92.71 -0.73 18.93 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 49 H 0.06 1.11 7.95 -2.38 -0.02 1.09 16 50 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 51 H 0.11 0.93 7.64 -2.38 -0.02 0.91 16 52 H 0.07 1.26 7.97 -2.39 -0.02 1.24 16 Total: -1.00 -79.99 401.31 -0.86 -80.84 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.52 Total: 34.78 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.76 Total: 10.15 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -8.03 Total: -117.07 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -0.09 Total: -54.97 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -79.99 -0.86 -80.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107261676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.414 kcal (2) G-P(sol) polarization free energy of solvation -79.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds