Wall clock time and date at job start Tue Mar 31 2020 19:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99781 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99622 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47064 * 179.97438 * 7 6 4 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 C 1.53432 * 111.21773 * 298.98301 * 12 11 10 14 14 C 1.53655 * 107.16201 * 242.10398 * 13 12 11 15 15 C 1.53903 * 105.86576 * 339.99836 * 14 13 12 16 16 C 1.53748 * 105.45231 * 28.28153 * 15 14 13 17 17 H 1.09004 * 110.52106 * 94.80766 * 16 15 14 18 18 N 1.46970 * 110.07397 * 218.81802 * 16 15 14 19 19 C 1.36930 * 126.36262 * 267.87107 * 18 16 15 20 20 H 1.08002 * 120.00807 * 359.97438 * 19 18 16 21 21 C 1.38821 * 119.99607 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99643 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47424 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46992 * 120.00568 * 23 21 19 26 26 H 1.48505 * 109.47080 * 239.99926 * 23 21 19 27 27 C 1.47111 * 107.27090 * 87.87248 * 18 16 15 28 28 C 1.53898 * 111.24006 * 61.21169 * 12 11 10 29 29 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47061 * 300.00668 * 1 2 3 31 31 H 1.09002 * 109.46668 * 60.00355 * 1 2 3 32 32 H 1.09001 * 109.46812 * 239.99783 * 2 1 3 33 33 H 1.09002 * 109.46935 * 120.00125 * 2 1 3 34 34 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 35 35 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 36 36 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 37 37 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 38 38 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 39 39 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47021 * 299.99722 * 11 10 8 41 41 H 1.09001 * 109.47001 * 59.99554 * 11 10 8 42 42 H 1.08998 * 109.90242 * 1.48848 * 13 12 11 43 43 H 1.09004 * 109.90304 * 122.72445 * 13 12 11 44 44 H 1.08993 * 110.17361 * 99.09879 * 14 13 12 45 45 H 1.09000 * 110.17151 * 220.82727 * 14 13 12 46 46 H 1.08998 * 110.24691 * 147.27863 * 15 14 13 47 47 H 1.08996 * 110.24833 * 269.28888 * 15 14 13 48 48 H 0.96997 * 120.00053 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.08802 * 148.90419 * 27 18 16 50 50 H 1.08996 * 110.08482 * 270.42175 * 27 18 16 51 51 H 1.09005 * 110.24056 * 243.80577 * 28 12 11 52 52 H 1.08997 * 110.24320 * 5.80309 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1535 0.3920 0.0015 6 7 4.2210 2.6095 0.0013 7 6 5.6860 2.6095 0.0025 8 6 6.1884 4.0303 0.0023 9 8 5.4003 4.9521 0.0009 10 7 7.5135 4.2766 0.0028 11 6 8.0019 5.6577 0.0032 12 6 9.5318 5.6577 0.0043 13 6 10.0862 4.9645 1.2559 14 6 10.8901 6.0151 2.0375 15 6 11.2263 7.1255 1.0263 16 6 10.0912 7.0931 -0.0102 17 1 9.3180 7.8170 0.2472 18 7 10.6312 7.3261 -1.3571 19 6 10.7437 8.5359 -1.9885 20 1 10.4175 9.4373 -1.4910 21 6 11.2770 8.6038 -3.2684 22 7 11.6740 7.5053 -3.8751 23 14 11.4311 10.2542 -4.1296 24 1 10.9182 11.3267 -3.2398 25 1 12.8581 10.5154 -4.4473 26 1 10.6402 10.2326 -5.3863 27 6 11.0283 6.0181 -1.9007 28 6 10.0903 4.9669 -1.2524 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.7361 3.4496 0.0009 37 1 6.0486 2.0956 0.8927 38 1 6.0501 2.0957 -0.8873 39 1 8.1438 3.5392 0.0036 40 1 7.6389 6.1717 -0.8868 41 1 7.6382 6.1714 0.8932 42 1 9.2649 4.5939 1.8693 43 1 10.7372 4.1398 0.9657 44 1 10.2891 6.4183 2.8525 45 1 11.8057 5.5725 2.4296 46 1 11.2541 8.0942 1.5252 47 1 12.1826 6.9206 0.5451 48 1 12.0470 7.5528 -4.7692 49 1 10.9094 6.0113 -2.9842 50 1 12.0634 5.8016 -1.6366 51 1 10.6474 4.0721 -0.9749 52 1 9.2791 4.7109 -1.9339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107309828.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:49 Heat of formation + Delta-G solvation = -70.664481 kcal Electronic energy + Delta-G solvation = -29640.191319 eV Core-core repulsion = 25639.194960 eV Total energy + Delta-G solvation = -4000.996360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.46810 -39.78257 -38.90287 -35.10919 -34.77578 -34.46703 -33.99186 -31.71137 -30.62485 -29.51156 -28.19979 -26.94090 -26.72773 -24.17743 -23.70900 -22.20128 -20.87498 -20.58481 -20.49132 -19.62583 -18.56866 -17.80554 -17.10541 -16.52449 -16.41739 -16.25259 -15.67038 -15.30203 -15.05567 -14.59875 -14.49059 -14.23099 -13.92215 -13.65911 -13.56449 -13.46230 -13.26567 -13.11359 -12.72517 -12.57203 -12.21965 -12.10878 -11.92802 -11.65780 -11.52774 -11.20325 -11.08297 -11.07313 -10.87651 -10.69878 -10.60530 -10.29516 -10.17910 -10.16476 -10.07481 -10.03381 -9.79326 -9.63938 -9.51457 -9.43028 -9.00467 -8.69542 -6.91236 -5.67203 -3.12065 2.35883 2.48148 2.64311 3.32407 3.37406 3.43385 3.45487 4.40343 4.44817 4.51473 4.60346 4.65375 4.89250 4.94214 5.02014 5.03604 5.06739 5.15343 5.16705 5.27643 5.40134 5.45633 5.48550 5.56288 5.68794 5.69546 5.80698 5.85964 5.94079 5.94915 5.99693 6.04593 6.06788 6.09766 6.11795 6.27301 6.31579 6.40458 6.47089 6.60712 6.64728 6.73091 6.85464 7.05098 7.22364 7.40435 7.48058 7.61193 7.83327 7.94370 8.06223 8.38140 9.18954 9.79816 10.45796 11.33598 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.002170 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.063709 B =12897.755404 C =13847.528913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.514 3.486 5 O -0.544 6.544 6 N -0.719 5.719 7 C 0.098 3.902 8 C 0.505 3.495 9 O -0.542 6.542 10 N -0.714 5.714 11 C 0.142 3.858 12 C -0.084 4.084 13 C -0.111 4.111 14 C -0.119 4.119 15 C -0.137 4.137 16 C 0.173 3.827 17 H 0.055 0.945 18 N -0.587 5.587 19 C -0.218 4.218 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.140 3.860 28 C -0.134 4.134 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.413 0.587 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.403 0.597 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.252 0.748 49 H 0.119 0.881 50 H 0.006 0.994 51 H 0.056 0.944 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.432 -12.619 10.496 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.180 4.180 4 C 0.300 3.700 5 O -0.421 6.421 6 N -0.375 5.375 7 C -0.029 4.029 8 C 0.290 3.710 9 O -0.420 6.420 10 N -0.365 5.365 11 C 0.019 3.981 12 C -0.086 4.086 13 C -0.149 4.149 14 C -0.157 4.157 15 C -0.177 4.177 16 C 0.063 3.937 17 H 0.073 0.927 18 N -0.307 5.307 19 C -0.347 4.347 20 H 0.097 0.903 21 C -0.207 4.207 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.015 3.985 28 C -0.172 4.172 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.250 0.750 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.238 0.762 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.063 0.937 49 H 0.136 0.864 50 H 0.024 0.976 51 H 0.074 0.926 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.463 -12.551 10.248 21.719 hybrid contribution 0.436 0.939 -0.382 1.104 sum -14.027 -11.612 9.866 20.711 Atomic orbital electron populations 1.21799 0.95425 1.01994 1.01866 1.21286 0.95307 0.94553 1.03601 1.21715 0.91190 1.00350 1.04731 1.20801 0.90538 0.83103 0.75509 1.90710 1.70554 1.31297 1.49523 1.45781 1.06031 1.09972 1.75704 1.21069 0.82335 0.94665 1.04843 1.20440 0.83074 0.90816 0.76625 1.90701 1.55207 1.45925 1.50170 1.45976 1.06291 1.10225 1.74044 1.21433 0.93300 0.81028 1.02300 1.21901 0.92376 0.98429 0.95919 1.22151 0.98884 0.98122 0.95766 1.21992 0.99074 0.96722 0.97957 1.22704 1.01376 0.97007 0.96638 1.21123 0.93406 0.92005 0.87161 0.92700 1.44433 1.71509 1.03642 1.11162 1.19140 1.34491 0.84245 0.96786 0.90337 1.24782 1.01205 0.97436 0.97297 1.69663 1.48021 1.24977 1.14255 0.85995 0.77314 0.82717 0.79466 1.20503 1.21797 1.21758 1.22034 0.92565 0.81735 1.02167 1.23019 0.99945 0.98793 0.95489 0.92381 0.92648 0.92613 0.91181 0.91227 0.88717 0.88654 0.74953 0.88444 0.88311 0.76245 0.90713 0.91674 0.92439 0.91745 0.92638 0.92545 0.92765 0.91327 0.93743 0.86375 0.97625 0.92550 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.11 -0.79 5.22 -26.73 -0.14 -0.93 16 3 C -0.14 -0.96 5.70 -27.88 -0.16 -1.12 16 4 C 0.51 5.24 7.83 -10.99 -0.09 5.15 16 5 O -0.54 -7.39 15.98 5.56 0.09 -7.30 16 6 N -0.72 -7.05 5.53 -61.47 -0.34 -7.39 16 7 C 0.10 0.97 6.15 -5.19 -0.03 0.94 16 8 C 0.51 6.20 7.90 -10.98 -0.09 6.11 16 9 O -0.54 -8.44 15.67 5.56 0.09 -8.36 16 10 N -0.71 -8.46 4.84 -60.30 -0.29 -8.75 16 11 C 0.14 2.11 4.23 -4.05 -0.02 2.09 16 12 C -0.08 -1.32 0.72 -153.26 -0.11 -1.43 16 13 C -0.11 -1.45 5.60 -26.17 -0.15 -1.60 16 14 C -0.12 -1.64 6.80 -25.92 -0.18 -1.81 16 15 C -0.14 -2.39 6.45 -25.87 -0.17 -2.55 16 16 C 0.17 3.33 3.39 -66.73 -0.23 3.11 16 17 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 18 N -0.59 -14.12 2.97 -162.47 -0.48 -14.60 16 19 C -0.22 -5.86 10.32 -15.06 -0.16 -6.02 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -26.17 10.06 55.49 0.56 -25.61 16 23 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.14 3.24 6.00 -2.61 -0.02 3.22 16 28 C -0.13 -2.32 5.81 -25.16 -0.15 -2.46 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.41 3.84 7.44 -40.82 -0.30 3.54 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 3.91 7.82 -40.82 -0.32 3.59 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.66 7.46 -51.93 -0.39 0.27 16 43 H 0.06 0.80 7.01 -51.93 -0.36 0.44 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.12 3.14 5.51 -51.93 -0.29 2.85 16 50 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 51 H 0.06 0.85 7.04 -51.93 -0.37 0.49 16 52 H 0.06 0.97 7.65 -51.93 -0.40 0.57 16 LS Contribution 407.32 15.07 6.14 6.14 Total: -1.00 -31.96 407.32 -9.78 -41.74 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -9.13 Total: 5.57 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.39 Total: 1.81 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.56 Total: -56.36 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.18 Total: -15.66 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.96 -9.78 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107309828.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.926 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds