Wall clock time and date at job start Tue Mar 31 2020 20:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 H 1.09004 * 109.46835 * 305.00269 * 3 2 1 5 5 C 1.53000 * 109.47014 * 64.99953 * 3 2 1 6 6 C 1.52992 * 109.46995 * 185.00389 * 3 2 1 7 7 C 1.52997 * 109.47291 * 175.00137 * 6 3 2 8 8 C 1.50705 * 109.47597 * 179.97438 * 7 6 3 9 9 O 1.21279 * 119.99530 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00025 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99822 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.85431 * 37.34063 * 11 10 8 13 13 C 1.54623 * 110.97166 * 273.55077 * 11 10 8 14 14 C 1.51286 * 104.19583 * 217.04495 * 13 11 10 15 15 O 1.21283 * 124.94068 * 196.22850 * 14 13 11 16 16 N 1.34417 * 110.11517 * 16.49747 * 14 13 11 17 17 C 1.46497 * 124.35094 * 180.16242 * 16 14 13 18 18 C 1.53949 * 113.74131 * 38.76337 * 17 16 14 19 19 N 1.47809 * 86.03405 * 222.08543 * 18 17 16 20 20 C 1.36944 * 134.45428 * 204.64322 * 19 18 17 21 21 H 1.07995 * 120.00109 * 179.86787 * 20 19 18 22 22 C 1.38809 * 119.99873 * 359.86813 * 20 19 18 23 23 N 1.31620 * 120.00226 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00017 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46756 * 89.99879 * 24 22 20 26 26 H 1.48502 * 109.47125 * 210.00259 * 24 22 20 27 27 H 1.48502 * 109.46712 * 330.00143 * 24 22 20 28 28 C 1.47572 * 91.05547 * 24.54875 * 19 18 17 29 29 C 1.46762 * 111.30037 * 0.02562 * 16 14 13 30 30 H 1.08996 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46771 * 300.00042 * 1 2 3 32 32 H 1.08996 * 109.47154 * 59.99680 * 1 2 3 33 33 H 1.08997 * 109.46872 * 240.00654 * 2 1 3 34 34 H 1.08996 * 109.47154 * 120.00320 * 2 1 3 35 35 H 1.08999 * 109.46860 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47125 * 300.00512 * 5 3 2 37 37 H 1.09005 * 109.46540 * 60.00444 * 5 3 2 38 38 H 1.08996 * 109.47414 * 54.99956 * 6 3 2 39 39 H 1.09004 * 109.46789 * 294.99783 * 6 3 2 40 40 H 1.09005 * 109.47137 * 59.99403 * 7 6 3 41 41 H 1.09005 * 109.47174 * 300.00053 * 7 6 3 42 42 H 0.96998 * 120.00156 * 0.02562 * 10 8 7 43 43 H 1.09000 * 110.48720 * 98.37029 * 13 11 10 44 44 H 1.08997 * 110.48721 * 335.72625 * 13 11 10 45 45 H 1.09000 * 112.94291 * 170.35350 * 17 16 14 46 46 H 1.08997 * 113.76893 * 336.34946 * 18 17 16 47 47 H 1.09000 * 113.76451 * 107.74481 * 18 17 16 48 48 H 0.96999 * 119.99865 * 180.02562 * 23 22 20 49 49 H 1.08996 * 113.77356 * 221.15141 * 28 19 18 50 50 H 1.09000 * 113.77234 * 89.75283 * 28 19 18 51 51 H 1.09004 * 110.38933 * 224.25961 * 29 16 14 52 52 H 1.08995 * 110.11843 * 102.33377 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1258 7 6 4.0645 2.8850 -0.2512 8 6 5.5664 2.8869 -0.3745 9 8 6.1771 1.8392 -0.3627 10 7 6.2310 4.0529 -0.4978 11 6 7.6911 4.0548 -0.6171 12 1 8.0326 3.2104 -1.2160 13 6 8.3603 4.0512 0.7768 14 6 9.5753 4.9365 0.6074 15 8 10.5164 4.9780 1.3712 16 7 9.4572 5.6747 -0.5097 17 6 10.4595 6.6367 -0.9746 18 6 11.9112 6.1685 -0.7666 19 7 12.1873 7.5538 -0.3316 20 6 13.3061 8.3427 -0.2952 21 1 13.2419 9.3540 0.0784 22 6 14.5227 7.8426 -0.7386 23 7 14.6009 6.6103 -1.1944 24 14 16.0487 8.9189 -0.6897 25 1 16.7353 8.7451 0.6156 26 1 16.9672 8.5258 -1.7884 27 1 15.6567 10.3414 -0.8573 28 6 10.7736 7.7462 0.0453 29 6 8.1966 5.3908 -1.2056 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.9989 3.1541 1.3075 36 1 0.5489 2.1252 1.3970 37 1 2.0700 1.5875 2.1491 38 1 3.8570 0.8801 -1.0114 39 1 4.0029 0.9836 0.7596 40 1 3.7722 3.4493 0.6344 41 1 3.6263 3.3458 -1.1365 42 1 5.7426 4.8909 -0.5068 43 1 8.6604 3.0404 1.0533 44 1 7.6858 4.4679 1.5248 45 1 10.2579 7.0083 -1.9792 46 1 12.0250 5.4284 0.0254 47 1 12.4185 5.8872 -1.6895 48 1 15.4511 6.2607 -1.5039 49 1 10.3742 8.7222 -0.2303 50 1 10.5523 7.4706 1.0764 51 1 8.3689 5.2894 -2.2771 52 1 7.4752 6.1849 -1.0135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108581076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:46 Heat of formation + Delta-G solvation = -54.125145 kcal Electronic energy + Delta-G solvation = -29025.599045 eV Core-core repulsion = 25025.319884 eV Total energy + Delta-G solvation = -4000.279160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90583 -40.64636 -38.98121 -38.08294 -37.51406 -35.22381 -34.17118 -33.19752 -31.62045 -29.66038 -29.16230 -28.34619 -26.63983 -26.59192 -25.24040 -23.80750 -22.46779 -22.13189 -21.29821 -20.67027 -19.79101 -18.79620 -18.16380 -17.88460 -17.42503 -17.00452 -16.70746 -16.48058 -15.97326 -15.72605 -15.66139 -15.45494 -14.96064 -14.77694 -14.71576 -14.52787 -14.23886 -14.11207 -13.98983 -13.56731 -13.42607 -13.37611 -13.28084 -12.83767 -12.77625 -12.73711 -12.57618 -12.55498 -12.42920 -12.28729 -12.00332 -11.92261 -11.78250 -11.53080 -11.41237 -11.34190 -11.24044 -11.10784 -10.85030 -10.64714 -10.07330 -9.59156 -8.95371 -7.93187 -5.28155 1.42539 1.46462 1.55013 1.56002 1.70979 1.86514 2.22839 2.48306 3.25049 3.32728 3.46097 3.49433 3.76504 3.79194 3.87862 3.95345 4.02273 4.03407 4.22474 4.24503 4.39741 4.49875 4.50619 4.59184 4.62911 4.63826 4.72758 4.75717 4.77387 4.81799 4.84683 4.91828 4.93553 4.97548 5.15682 5.18222 5.19887 5.21358 5.24183 5.28850 5.30808 5.38949 5.46316 5.47776 5.64033 5.64365 5.83247 5.88141 6.23388 6.61584 6.87078 7.20531 7.34320 7.56758 8.52075 9.24139 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.046040 B = 0.001668 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.020834 B =16784.124590 C =16873.731025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.087 4.087 4 H 0.083 0.917 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.132 4.132 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.704 5.704 11 C 0.148 3.852 12 H 0.097 0.903 13 C -0.153 4.153 14 C 0.503 3.497 15 O -0.574 6.574 16 N -0.605 5.605 17 C 0.136 3.864 18 C 0.145 3.855 19 N -0.634 5.634 20 C -0.238 4.238 21 H 0.088 0.912 22 C -0.069 4.069 23 N -0.955 5.955 24 Si 0.985 3.015 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.261 1.261 28 C 0.115 3.885 29 C 0.101 3.899 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.423 0.577 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.140 0.860 46 H 0.019 0.981 47 H 0.041 0.959 48 H 0.248 0.752 49 H 0.072 0.928 50 H 0.023 0.977 51 H 0.107 0.893 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.802 -6.726 -1.846 35.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.105 4.105 4 H 0.101 0.899 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.172 4.172 8 C 0.300 3.700 9 O -0.464 6.464 10 N -0.358 5.358 11 C 0.041 3.959 12 H 0.115 0.885 13 C -0.194 4.194 14 C 0.292 3.708 15 O -0.453 6.453 16 N -0.338 5.338 17 C 0.033 3.967 18 C 0.019 3.981 19 N -0.361 5.361 20 C -0.366 4.366 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.604 5.604 24 Si 0.812 3.188 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.185 1.185 28 C -0.012 4.012 29 C -0.021 4.021 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.262 0.738 43 H 0.109 0.891 44 H 0.141 0.859 45 H 0.157 0.843 46 H 0.037 0.963 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.041 0.959 51 H 0.125 0.875 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -33.542 -7.282 -1.542 34.358 hybrid contribution 1.574 0.285 0.462 1.664 sum -31.969 -6.998 -1.080 32.744 Atomic orbital electron populations 1.21810 0.95225 1.01649 1.02234 1.21594 0.96414 0.96672 1.01504 1.21152 0.93884 0.96183 0.99273 0.89895 1.21968 1.01660 1.00895 0.96418 1.21355 0.95282 0.95306 1.01780 1.21792 0.88654 0.99944 1.06791 1.21466 0.91643 0.82792 0.74150 1.90736 1.71191 1.33317 1.51163 1.45784 1.05350 1.10073 1.74591 1.21497 0.81494 0.98728 0.94187 0.88515 1.22737 0.95381 1.00435 1.00878 1.21481 0.87841 0.80938 0.80578 1.90760 1.37421 1.68881 1.48244 1.48453 1.20492 1.40241 1.24615 1.23402 0.85982 0.88508 0.98840 1.22594 0.90834 0.87504 0.97149 1.46138 1.05024 1.11380 1.73565 1.19466 0.86567 0.94896 1.35677 0.89466 1.25744 1.00772 0.97995 1.01709 1.70051 1.24952 1.16519 1.48881 0.84992 0.78608 0.78465 0.76721 1.21846 1.21684 1.18490 1.22992 0.84225 0.97839 0.96104 1.22531 0.84779 0.96247 0.98557 0.93040 0.92145 0.92306 0.92550 0.92849 0.91255 0.92013 0.93595 0.92835 0.93250 0.86328 0.85885 0.73775 0.89064 0.85853 0.84291 0.96333 0.94023 0.94275 0.90991 0.95917 0.87467 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 71.98 0.70 -0.48 16 2 C -0.12 -1.20 5.40 30.60 0.17 -1.04 16 3 C -0.09 -0.68 2.39 -10.79 -0.03 -0.70 16 4 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 5 C -0.15 -1.00 8.70 71.98 0.63 -0.37 16 6 C -0.10 -1.13 3.97 30.59 0.12 -1.01 16 7 C -0.13 -0.92 5.45 29.85 0.16 -0.76 16 8 C 0.51 7.46 7.83 87.66 0.69 8.14 16 9 O -0.58 -14.88 15.72 -3.03 -0.05 -14.93 16 10 N -0.70 -7.05 5.18 -437.52 -2.27 -9.32 16 11 C 0.15 2.46 3.43 46.05 0.16 2.62 16 12 H 0.10 1.98 7.72 -2.38 -0.02 1.96 16 13 C -0.15 -3.58 6.59 30.59 0.20 -3.38 16 14 C 0.50 17.38 7.42 87.90 0.65 18.03 16 15 O -0.57 -27.41 14.61 -3.04 -0.04 -27.45 16 16 N -0.60 -17.59 3.16 -799.71 -2.52 -20.11 16 17 C 0.14 5.04 4.81 46.75 0.22 5.27 16 18 C 0.15 7.63 6.90 86.44 0.60 8.23 16 19 N -0.63 -35.03 3.70 -716.78 -2.65 -37.68 16 20 C -0.24 -14.11 10.70 84.03 0.90 -13.21 16 21 H 0.09 4.88 7.83 -2.91 -0.02 4.85 16 22 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 23 N -0.96 -61.21 11.39 21.65 0.25 -60.96 16 24 Si 0.98 47.62 29.55 68.60 2.03 49.65 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 28 C 0.11 4.90 8.43 86.49 0.73 5.63 16 29 C 0.10 1.55 7.07 86.84 0.61 2.17 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.42 6.56 -2.39 -0.02 0.40 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.27 6.56 -2.39 -0.02 0.26 16 36 H 0.06 0.36 6.56 -2.39 -0.02 0.34 16 37 H 0.04 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 39 H 0.05 0.77 8.10 -2.38 -0.02 0.75 16 40 H 0.12 0.35 6.56 -2.38 -0.02 0.33 16 41 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 42 H 0.42 0.92 8.37 -92.71 -0.78 0.15 16 43 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.12 2.36 8.08 -2.39 -0.02 2.35 16 45 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 46 H 0.02 1.12 5.75 -2.39 -0.01 1.11 16 47 H 0.04 2.38 7.16 -2.39 -0.02 2.37 16 48 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 49 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 50 H 0.02 1.07 7.22 -2.39 -0.02 1.05 16 51 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 52 H 0.11 0.95 7.77 -2.39 -0.02 0.93 16 Total: -1.00 -88.92 409.13 1.84 -87.08 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.13 Total: 8.28 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 6.97 Total: 25.45 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -7.20 Total: -128.07 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.09 Total: -42.39 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -88.92 1.84 -87.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108581076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.950 kcal (2) G-P(sol) polarization free energy of solvation -88.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds