Wall clock time and date at job start Tue Mar 31 2020 20:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 H 1.09004 * 109.46945 * 304.99985 * 3 2 1 5 5 C 1.52999 * 109.47272 * 65.00068 * 3 2 1 6 6 C 1.53004 * 109.47083 * 185.00184 * 3 2 1 7 7 C 1.53005 * 109.47227 * 174.99753 * 6 3 2 8 8 C 1.50696 * 109.47208 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99877 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99946 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00077 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.85392 * 328.79501 * 11 10 8 13 13 C 1.54626 * 111.00103 * 92.60480 * 11 10 8 14 14 C 1.51291 * 104.25547 * 142.71383 * 13 11 10 15 15 O 1.21280 * 124.94051 * 164.01255 * 14 13 11 16 16 N 1.34415 * 110.11361 * 344.14971 * 14 13 11 17 17 C 1.46502 * 124.34954 * 179.43943 * 16 14 13 18 18 C 1.53495 * 114.20341 * 299.69621 * 17 16 14 19 19 N 1.47066 * 87.98658 * 87.71675 * 18 17 16 20 20 C 1.36937 * 136.06113 * 206.85859 * 19 18 17 21 21 H 1.07995 * 120.00001 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00320 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99557 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 60.00463 * 24 22 20 26 26 H 1.48506 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47174 * 300.00290 * 24 22 20 28 28 C 1.47067 * 87.88528 * 27.11900 * 19 18 17 29 29 C 1.46761 * 111.30076 * 359.16442 * 16 14 13 30 30 H 1.09003 * 109.47582 * 60.00278 * 1 2 3 31 31 H 1.09004 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47416 * 300.00016 * 1 2 3 33 33 H 1.08998 * 109.47416 * 239.99984 * 2 1 3 34 34 H 1.08998 * 109.47316 * 119.99333 * 2 1 3 35 35 H 1.08990 * 109.47345 * 60.00131 * 5 3 2 36 36 H 1.09004 * 109.46881 * 180.02562 * 5 3 2 37 37 H 1.08998 * 109.46774 * 299.99571 * 5 3 2 38 38 H 1.08996 * 109.46854 * 54.99847 * 6 3 2 39 39 H 1.08998 * 109.47246 * 294.99582 * 6 3 2 40 40 H 1.09000 * 109.46868 * 59.99554 * 7 6 3 41 41 H 1.08998 * 109.46868 * 300.00061 * 7 6 3 42 42 H 0.97004 * 119.99987 * 0.02562 * 10 8 7 43 43 H 1.08997 * 110.49066 * 261.61532 * 13 11 10 44 44 H 1.09002 * 110.48366 * 24.25720 * 13 11 10 45 45 H 1.08999 * 113.28231 * 166.63148 * 17 16 14 46 46 H 1.09005 * 113.46950 * 332.94241 * 18 17 16 47 47 H 1.08998 * 113.47096 * 202.49885 * 18 17 16 48 48 H 0.96999 * 119.99537 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.46858 * 87.65629 * 28 19 18 50 50 H 1.08993 * 113.47208 * 218.09965 * 28 19 18 51 51 H 1.09000 * 110.24341 * 136.28420 * 29 16 14 52 52 H 1.08999 * 110.25608 * 258.28598 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 4.0644 2.8851 -0.2512 8 6 5.5664 2.8869 -0.3745 9 8 6.1770 1.8391 -0.3636 10 7 6.2309 4.0529 -0.4979 11 6 7.6909 4.0548 -0.6183 12 1 8.1262 3.2164 -0.0743 13 6 8.1246 4.0364 -2.1023 14 6 9.3469 4.9271 -2.1443 15 8 10.1482 4.9645 -3.0539 16 7 9.4171 5.6687 -1.0254 17 6 10.4840 6.6301 -0.7365 18 6 11.8881 6.0129 -0.6768 19 7 11.9870 6.2258 -2.1287 20 6 12.6630 5.6428 -3.1670 21 1 13.3179 4.8042 -2.9819 22 6 12.5058 6.1289 -4.4577 23 7 11.7073 7.1505 -4.6834 24 14 13.4276 5.3330 -5.8742 25 1 13.0364 3.9043 -5.9789 26 1 13.0903 6.0331 -7.1397 27 1 14.8892 5.4294 -5.6300 28 6 11.0452 7.3447 -1.9737 29 6 8.2840 5.3962 -0.1333 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.0698 1.5876 2.1491 36 1 1.9981 3.1544 1.3071 37 1 0.5489 2.1253 1.3968 38 1 3.8569 0.8801 -1.0113 39 1 4.0030 0.9837 0.7596 40 1 3.7722 3.4494 0.6343 41 1 3.6263 3.3457 -1.1366 42 1 5.7425 4.8910 -0.5070 43 1 8.3769 3.0228 -2.4137 44 1 7.3371 4.4459 -2.7350 45 1 10.2519 7.2940 0.0962 46 1 11.8881 4.9609 -0.3915 47 1 12.5990 6.6061 -0.1017 48 1 11.5977 7.4904 -5.5853 49 1 11.5316 8.2928 -1.7439 50 1 10.3285 7.4253 -2.7909 51 1 8.6284 5.3058 0.8969 52 1 7.5403 6.1889 -0.2150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108581077.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:49 Heat of formation + Delta-G solvation = -29.295509 kcal Electronic energy + Delta-G solvation = -29767.123501 eV Core-core repulsion = 25767.921034 eV Total energy + Delta-G solvation = -3999.202467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73208 -40.63775 -38.85803 -37.99600 -37.22957 -35.05388 -33.96828 -33.18305 -31.37838 -29.62775 -29.15802 -28.16362 -26.59086 -26.26819 -25.20731 -23.79458 -22.33990 -22.11052 -21.33338 -20.68400 -19.28878 -18.65744 -18.18516 -17.55318 -17.14956 -16.80964 -16.65453 -16.47176 -15.92406 -15.72630 -15.53729 -15.17595 -15.11073 -14.68527 -14.53449 -14.31109 -14.18524 -14.13972 -14.01098 -13.71179 -13.30859 -13.21813 -12.88269 -12.78112 -12.75475 -12.74367 -12.55841 -12.52710 -12.44477 -12.17852 -11.85912 -11.80492 -11.72516 -11.42286 -11.35051 -11.25217 -11.19511 -10.88056 -10.77931 -10.41341 -9.90414 -9.30949 -8.61554 -7.71350 -4.95822 1.38539 1.44107 1.47588 1.68316 1.99907 2.03374 2.37778 2.56285 3.45681 3.52462 3.55233 3.66816 3.79478 3.85067 3.86448 4.01714 4.04549 4.08918 4.22225 4.37376 4.48792 4.50099 4.61681 4.63421 4.64194 4.70374 4.71775 4.76543 4.81187 4.84389 4.87829 4.94495 4.95587 4.97695 5.14440 5.16932 5.23295 5.25174 5.28203 5.29724 5.35755 5.38080 5.48944 5.62052 5.62764 5.63947 6.06759 6.17484 6.52646 6.60880 7.07578 7.32929 7.71908 7.82861 8.79902 9.47810 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.002097 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.683647 B =13350.321174 C =14124.256544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.088 4.088 4 H 0.078 0.922 5 C -0.151 4.151 6 C -0.099 4.099 7 C -0.132 4.132 8 C 0.510 3.490 9 O -0.587 6.587 10 N -0.704 5.704 11 C 0.150 3.850 12 H 0.095 0.905 13 C -0.157 4.157 14 C 0.473 3.527 15 O -0.492 6.492 16 N -0.605 5.605 17 C 0.129 3.871 18 C 0.098 3.902 19 N -0.618 5.618 20 C -0.181 4.181 21 H 0.058 0.942 22 C -0.054 4.054 23 N -0.944 5.944 24 Si 0.956 3.044 25 H -0.293 1.293 26 H -0.295 1.295 27 H -0.278 1.278 28 C 0.144 3.856 29 C 0.112 3.888 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.422 0.578 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.146 0.854 46 H 0.030 0.970 47 H 0.063 0.937 48 H 0.235 0.765 49 H 0.029 0.971 50 H 0.033 0.967 51 H 0.109 0.891 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.114 -5.189 17.918 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.106 4.106 4 H 0.097 0.903 5 C -0.208 4.208 6 C -0.137 4.137 7 C -0.172 4.172 8 C 0.299 3.701 9 O -0.467 6.467 10 N -0.358 5.358 11 C 0.043 3.957 12 H 0.113 0.887 13 C -0.199 4.199 14 C 0.258 3.742 15 O -0.362 6.362 16 N -0.341 5.341 17 C 0.025 3.975 18 C -0.028 4.028 19 N -0.343 5.343 20 C -0.310 4.310 21 H 0.076 0.924 22 C -0.247 4.247 23 N -0.594 5.594 24 Si 0.787 3.213 25 H -0.221 1.221 26 H -0.222 1.222 27 H -0.205 1.205 28 C 0.018 3.982 29 C -0.011 4.011 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.260 0.740 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.163 0.837 46 H 0.049 0.951 47 H 0.080 0.920 48 H 0.044 0.956 49 H 0.046 0.954 50 H 0.052 0.948 51 H 0.127 0.873 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -25.084 -5.933 17.104 30.934 hybrid contribution 0.907 -0.285 -1.516 1.790 sum -24.177 -6.217 15.587 29.430 Atomic orbital electron populations 1.21810 0.95160 1.01690 1.02242 1.21590 0.96466 0.96611 1.01508 1.21157 0.93759 0.96267 0.99422 0.90316 1.21953 1.01699 1.00899 0.96226 1.21355 0.95402 0.95170 1.01740 1.21792 0.88547 1.00074 1.06739 1.21492 0.91715 0.82806 0.74090 1.90725 1.71193 1.33270 1.51513 1.45807 1.05677 1.10007 1.74287 1.21459 0.81877 0.98999 0.93368 0.88662 1.22711 0.97141 1.00096 0.99959 1.21459 0.87334 0.82205 0.83233 1.91184 1.43151 1.65328 1.36567 1.47865 1.24905 1.41206 1.20163 1.22428 0.86070 0.90611 0.98408 1.23115 0.95479 0.98344 0.85892 1.45421 1.52608 1.34615 1.01671 1.18649 1.17051 1.08971 0.86331 0.92371 1.25149 1.01451 0.99520 0.98548 1.69962 1.42563 1.28398 1.18526 0.85485 0.78494 0.77385 0.79937 1.22088 1.22159 1.20452 1.22324 0.91157 0.90407 0.94337 1.22347 0.88188 0.95567 0.94971 0.92542 0.92962 0.91897 0.92875 0.92512 0.93215 0.91210 0.91975 0.93381 0.92764 0.85724 0.86576 0.73963 0.90477 0.87580 0.83661 0.95150 0.91956 0.95589 0.95354 0.94819 0.87330 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.67 71.98 0.70 -0.68 16 2 C -0.12 -1.40 5.40 30.59 0.17 -1.23 16 3 C -0.09 -0.85 2.39 -10.79 -0.03 -0.87 16 4 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 5 C -0.15 -1.09 8.70 71.98 0.63 -0.46 16 6 C -0.10 -1.35 3.97 30.60 0.12 -1.23 16 7 C -0.13 -1.29 5.46 29.85 0.16 -1.13 16 8 C 0.51 9.19 7.83 87.66 0.69 9.88 16 9 O -0.59 -16.93 15.62 -3.05 -0.05 -16.98 16 10 N -0.70 -9.89 5.15 -437.53 -2.25 -12.15 16 11 C 0.15 3.13 3.53 46.05 0.16 3.29 16 12 H 0.10 2.34 7.54 -2.39 -0.02 2.32 16 13 C -0.16 -4.75 6.59 30.59 0.20 -4.55 16 14 C 0.47 19.40 7.56 87.90 0.66 20.06 16 15 O -0.49 -27.58 12.47 -3.03 -0.04 -27.62 16 16 N -0.60 -19.23 3.18 -793.34 -2.52 -21.75 16 17 C 0.13 4.40 5.12 45.46 0.23 4.63 16 18 C 0.10 4.00 8.34 83.18 0.69 4.69 16 19 N -0.62 -33.48 2.29 -738.53 -1.69 -35.17 16 20 C -0.18 -11.22 8.93 84.03 0.75 -10.47 16 21 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 22 C -0.05 -3.42 5.06 84.86 0.43 -2.99 16 23 N -0.94 -61.79 11.51 21.65 0.25 -61.54 16 24 Si 0.96 51.53 29.55 68.60 2.03 53.55 16 25 H -0.29 -15.88 7.11 99.48 0.71 -15.17 16 26 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 27 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 28 C 0.14 6.95 6.41 83.18 0.53 7.48 16 29 C 0.11 2.01 7.08 86.83 0.61 2.62 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.49 6.56 -2.39 -0.02 0.47 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 0.32 6.57 -2.39 -0.02 0.30 16 37 H 0.06 0.40 6.56 -2.39 -0.02 0.38 16 38 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 39 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 40 H 0.12 0.54 6.57 -2.39 -0.02 0.52 16 41 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.42 2.70 8.43 -92.71 -0.78 1.92 16 43 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.11 2.94 8.08 -2.39 -0.02 2.92 16 45 H 0.15 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.24 15.20 8.31 -92.71 -0.77 14.42 16 49 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.03 1.91 6.58 -2.39 -0.02 1.89 16 51 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.10 1.21 7.80 -2.39 -0.02 1.19 16 Total: -1.00 -91.19 406.00 2.56 -88.62 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 0.12 Total: 3.98 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: 6.72 Total: 29.05 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -6.22 Total: -130.60 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.09 Total: -44.60 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.03 Total: 53.55 kcal Total: -91.19 2.56 -88.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108581077.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.329 kcal (2) G-P(sol) polarization free energy of solvation -91.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds