Wall clock time and date at job start Tue Mar 31 2020 20:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47194 * 2 1 4 4 H 1.09000 * 109.46654 * 55.00161 * 3 2 1 5 5 C 1.52998 * 109.46864 * 294.99899 * 3 2 1 6 6 C 1.52995 * 109.46663 * 174.99912 * 3 2 1 7 7 C 1.53003 * 109.47229 * 184.99911 * 6 3 2 8 8 C 1.50693 * 109.47483 * 179.97438 * 7 6 3 9 9 O 1.21279 * 119.99897 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99803 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99768 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.85853 * 34.29928 * 11 10 8 13 13 C 1.54632 * 110.96760 * 270.50984 * 11 10 8 14 14 C 1.51282 * 104.19288 * 266.64134 * 13 11 10 15 15 O 1.21281 * 124.93878 * 163.78358 * 14 13 11 16 16 N 1.34412 * 110.11987 * 343.75010 * 14 13 11 17 17 C 1.46501 * 124.35237 * 179.57478 * 16 14 13 18 18 C 1.53941 * 113.74418 * 38.71058 * 17 16 14 19 19 N 1.47808 * 86.03937 * 222.08809 * 18 17 16 20 20 C 1.36937 * 134.45902 * 204.64452 * 19 18 17 21 21 H 1.07997 * 119.99974 * 179.86776 * 20 19 18 22 22 C 1.38810 * 119.99926 * 359.86476 * 20 19 18 23 23 N 1.31627 * 119.99777 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00379 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46351 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47227 * 120.00224 * 24 22 20 27 27 H 1.48496 * 109.46968 * 240.00473 * 24 22 20 28 28 C 1.47581 * 91.05044 * 24.54833 * 19 18 17 29 29 C 1.46769 * 111.30147 * 359.59270 * 16 14 13 30 30 H 1.09004 * 109.46704 * 300.00340 * 1 2 3 31 31 H 1.09002 * 109.46692 * 59.99982 * 1 2 3 32 32 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46704 * 239.99660 * 2 1 3 34 34 H 1.09002 * 109.46905 * 120.00527 * 2 1 3 35 35 H 1.08997 * 109.47204 * 299.99512 * 5 3 2 36 36 H 1.08996 * 109.47508 * 60.00512 * 5 3 2 37 37 H 1.08999 * 109.46506 * 180.02562 * 5 3 2 38 38 H 1.09004 * 109.47543 * 65.00269 * 6 3 2 39 39 H 1.08998 * 109.47419 * 304.99902 * 6 3 2 40 40 H 1.09004 * 109.46565 * 59.99760 * 7 6 3 41 41 H 1.08999 * 109.47246 * 300.00732 * 7 6 3 42 42 H 0.96995 * 120.00067 * 0.02562 * 10 8 7 43 43 H 1.08998 * 110.48353 * 25.32300 * 13 11 10 44 44 H 1.09001 * 110.48226 * 147.83344 * 13 11 10 45 45 H 1.08994 * 112.94718 * 170.31019 * 17 16 14 46 46 H 1.09007 * 113.76824 * 336.35268 * 18 17 16 47 47 H 1.09000 * 113.76868 * 107.74506 * 18 17 16 48 48 H 0.96999 * 119.99516 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.77051 * 221.14890 * 28 19 18 50 50 H 1.09000 * 113.76933 * 89.75655 * 28 19 18 51 51 H 1.09005 * 110.24344 * 258.01879 * 29 16 14 52 52 H 1.08991 * 110.24796 * 136.01803 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4442 0.1257 7 6 4.0647 2.8848 0.2511 8 6 5.5665 2.8865 0.3756 9 8 6.1770 1.8387 0.3646 10 7 6.2311 4.0525 0.4992 11 6 7.6912 4.0542 0.6196 12 1 8.1300 3.2483 0.0314 13 6 8.1243 3.9573 2.1009 14 6 8.3009 5.3970 2.5307 15 8 8.3634 5.7757 3.6811 16 7 8.3791 6.1952 1.4521 17 6 8.5429 7.6499 1.5103 18 6 9.4943 8.1224 2.6244 19 7 8.5046 9.1912 2.8753 20 6 8.5641 10.4433 3.4264 21 1 7.6707 11.0462 3.4948 22 6 9.7727 10.9377 3.8972 23 7 10.8615 10.2026 3.8143 24 14 9.8539 12.6455 4.6497 25 1 8.5029 13.2615 4.6258 26 1 10.3284 12.5460 6.0533 27 1 10.7949 13.4868 3.8675 28 6 7.4276 8.3683 2.2913 29 6 8.2790 5.4223 0.2084 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0700 1.5875 -2.1491 36 1 0.5490 2.1253 -1.3970 37 1 1.9991 3.1540 -1.3075 38 1 4.0030 0.9835 -0.7596 39 1 3.8571 0.8799 1.0113 40 1 3.6265 3.3456 1.1365 41 1 3.7724 3.4492 -0.6344 42 1 5.7427 4.8905 0.5083 43 1 7.3480 3.4743 2.6945 44 1 9.0645 3.4128 2.1885 45 1 8.7524 8.0932 0.5369 46 1 9.5939 7.4140 3.4469 47 1 10.4535 8.4875 2.2574 48 1 11.7061 10.5483 4.1430 49 1 6.7397 8.9295 1.6589 50 1 6.9188 7.7323 3.0157 51 1 9.2663 5.2909 -0.2345 52 1 7.6132 5.9231 -0.4943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108581078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:53 Heat of formation + Delta-G solvation = -29.085747 kcal Electronic energy + Delta-G solvation = -29390.191369 eV Core-core repulsion = 25390.997998 eV Total energy + Delta-G solvation = -3999.193371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.80610 -39.65057 -37.61717 -37.17448 -36.34204 -33.95587 -32.71576 -32.11843 -30.46432 -29.08451 -27.58968 -27.17286 -26.09478 -24.75141 -23.52439 -23.16587 -21.56155 -20.69867 -20.31548 -20.19795 -18.30204 -17.40789 -17.00484 -16.69710 -16.28184 -16.08386 -15.43766 -15.14283 -15.05133 -14.77283 -14.40891 -14.12714 -13.92286 -13.83134 -13.61033 -13.46714 -13.33205 -13.10368 -12.71486 -12.58411 -12.35027 -12.09324 -12.03764 -11.92737 -11.78259 -11.71405 -11.42348 -11.35999 -11.30374 -10.95094 -10.89436 -10.85834 -10.79896 -10.70692 -10.21955 -10.03600 -9.96554 -9.59622 -9.50959 -9.14883 -8.67267 -8.19184 -6.82531 -5.73274 -3.05364 2.39940 2.83707 2.95839 3.24942 3.41331 3.46497 3.48885 4.22319 4.31803 4.39199 4.43395 4.48971 4.50308 4.69459 4.77289 4.83816 4.94935 5.02405 5.04594 5.15641 5.18213 5.23127 5.26360 5.36121 5.39288 5.41521 5.52965 5.56572 5.60898 5.63521 5.65125 5.65943 5.70748 5.71458 5.72352 5.84324 5.88136 6.04904 6.08561 6.22030 6.26294 6.49424 6.56592 6.86447 7.22098 7.28476 7.49271 7.58194 7.62790 7.97530 8.00267 8.56607 9.07432 9.73691 10.62536 11.44007 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.001959 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.628803 B =14289.165418 C =14980.946512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.144 4.144 8 C 0.515 3.485 9 O -0.539 6.539 10 N -0.723 5.723 11 C 0.133 3.867 12 H 0.115 0.885 13 C -0.167 4.167 14 C 0.512 3.488 15 O -0.510 6.510 16 N -0.609 5.609 17 C 0.098 3.902 18 C 0.152 3.848 19 N -0.605 5.605 20 C -0.220 4.220 21 H 0.081 0.919 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.112 3.888 29 C 0.095 3.905 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.404 0.596 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.253 0.747 49 H 0.041 0.959 50 H 0.039 0.961 51 H 0.085 0.915 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.214 -19.362 -14.114 28.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.113 4.113 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.183 4.183 8 C 0.302 3.698 9 O -0.416 6.416 10 N -0.375 5.375 11 C 0.028 3.972 12 H 0.132 0.868 13 C -0.208 4.208 14 C 0.299 3.701 15 O -0.384 6.384 16 N -0.345 5.345 17 C -0.004 4.004 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C -0.015 4.015 29 C -0.029 4.029 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.239 0.761 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.056 0.944 51 H 0.103 0.897 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.567 -19.536 -13.348 28.322 hybrid contribution -0.106 1.382 0.502 1.474 sum -15.673 -18.154 -12.846 27.207 Atomic orbital electron populations 1.21831 0.95960 1.01499 1.01873 1.21565 0.95776 0.96258 1.02155 1.21211 0.95176 0.96388 0.98522 0.91088 1.21955 1.01346 1.00451 0.97158 1.21394 0.94245 0.94553 1.03460 1.21773 0.91601 1.00442 1.04526 1.20794 0.90340 0.83366 0.75263 1.90708 1.69987 1.31314 1.49574 1.46091 1.07092 1.09403 1.74957 1.21839 0.80758 0.98341 0.96280 0.86752 1.22820 1.04706 0.96307 0.96986 1.20690 0.76379 0.87895 0.85184 1.90788 1.49037 1.79354 1.19265 1.48535 1.72459 1.07522 1.05954 1.24051 1.00665 0.74962 1.00748 1.22786 0.93819 0.88246 0.92490 1.45709 1.04098 1.12005 1.71295 1.19027 0.94660 0.88417 1.32708 0.90160 1.24806 0.95601 0.98639 1.01432 1.69844 0.98853 1.36359 1.51504 0.86030 0.77403 0.83515 0.78705 1.20465 1.21723 1.21714 1.22908 0.92513 0.91981 0.94097 1.22339 1.01737 0.90609 0.88232 0.92788 0.92530 0.92937 0.91969 0.91928 0.92660 0.92515 0.92532 0.91159 0.91153 0.88772 0.88620 0.76100 0.88224 0.87169 0.87690 0.92590 0.91172 0.93693 0.94062 0.94370 0.89675 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.67 37.16 0.36 -0.44 16 2 C -0.12 -0.69 5.40 -26.73 -0.14 -0.84 16 3 C -0.09 -0.54 2.39 -90.62 -0.22 -0.76 16 4 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 5 C -0.15 -0.78 8.70 37.16 0.32 -0.46 16 6 C -0.10 -0.70 3.97 -26.73 -0.11 -0.80 16 7 C -0.14 -0.93 5.45 -27.88 -0.15 -1.08 16 8 C 0.52 4.82 7.83 -10.99 -0.09 4.73 16 9 O -0.54 -6.97 15.67 5.56 0.09 -6.89 16 10 N -0.72 -6.03 5.14 -52.22 -0.27 -6.30 16 11 C 0.13 1.24 3.48 -66.29 -0.23 1.01 16 12 H 0.11 1.01 7.63 -51.93 -0.40 0.61 16 13 C -0.17 -1.99 6.59 -26.74 -0.18 -2.17 16 14 C 0.51 8.53 7.42 -10.86 -0.08 8.45 16 15 O -0.51 -11.33 14.61 5.56 0.08 -11.25 16 16 N -0.61 -9.00 3.15 -166.64 -0.53 -9.53 16 17 C 0.10 1.83 4.81 -70.15 -0.34 1.49 16 18 C 0.15 3.79 6.90 -2.84 -0.02 3.77 16 19 N -0.60 -16.17 3.70 -177.89 -0.66 -16.83 16 20 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -28.14 11.39 55.49 0.63 -27.51 16 24 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.11 2.38 8.44 -2.97 -0.03 2.35 16 29 C 0.10 0.91 6.97 -3.12 -0.02 0.89 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 6.57 -51.93 -0.34 -0.07 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 37 H 0.06 0.26 6.56 -51.93 -0.34 -0.08 16 38 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 39 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.46 6.56 -51.93 -0.34 0.12 16 42 H 0.40 2.79 8.62 -40.82 -0.35 2.44 16 43 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 44 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 46 H 0.06 1.54 5.72 -51.93 -0.30 1.25 16 47 H 0.07 1.89 7.17 -51.93 -0.37 1.52 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.04 0.86 7.25 -51.93 -0.38 0.49 16 51 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 52 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 LS Contribution 409.45 15.07 6.17 6.17 Total: -1.00 -36.62 409.45 -9.71 -46.33 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -9.03 Total: -1.10 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.17 Total: 9.26 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.82 Total: -60.17 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.14 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.62 -9.71 -46.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108581078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.247 kcal (2) G-P(sol) polarization free energy of solvation -36.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds