Wall clock time and date at job start Tue Mar 31 2020 20:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47194 * 2 1 4 4 H 1.09000 * 109.46654 * 55.00161 * 3 2 1 5 5 C 1.52998 * 109.46864 * 294.99899 * 3 2 1 6 6 C 1.52995 * 109.46663 * 174.99912 * 3 2 1 7 7 C 1.53003 * 109.47229 * 184.99911 * 6 3 2 8 8 C 1.50693 * 109.47483 * 179.97438 * 7 6 3 9 9 O 1.21279 * 119.99897 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99803 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99768 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.85853 * 34.29928 * 11 10 8 13 13 C 1.54632 * 110.96760 * 270.50984 * 11 10 8 14 14 C 1.51282 * 104.19288 * 266.64134 * 13 11 10 15 15 O 1.21281 * 124.93878 * 163.78358 * 14 13 11 16 16 N 1.34412 * 110.11987 * 343.75010 * 14 13 11 17 17 C 1.46501 * 124.35237 * 179.57478 * 16 14 13 18 18 C 1.53941 * 113.74418 * 38.71058 * 17 16 14 19 19 N 1.47808 * 86.03937 * 222.08809 * 18 17 16 20 20 C 1.36937 * 134.45902 * 204.64452 * 19 18 17 21 21 H 1.07997 * 119.99974 * 179.86776 * 20 19 18 22 22 C 1.38810 * 119.99926 * 359.86476 * 20 19 18 23 23 N 1.31627 * 119.99777 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00379 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46351 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47227 * 120.00224 * 24 22 20 27 27 H 1.48496 * 109.46968 * 240.00473 * 24 22 20 28 28 C 1.47581 * 91.05044 * 24.54833 * 19 18 17 29 29 C 1.46769 * 111.30147 * 359.59270 * 16 14 13 30 30 H 1.09004 * 109.46704 * 300.00340 * 1 2 3 31 31 H 1.09002 * 109.46692 * 59.99982 * 1 2 3 32 32 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46704 * 239.99660 * 2 1 3 34 34 H 1.09002 * 109.46905 * 120.00527 * 2 1 3 35 35 H 1.08997 * 109.47204 * 299.99512 * 5 3 2 36 36 H 1.08996 * 109.47508 * 60.00512 * 5 3 2 37 37 H 1.08999 * 109.46506 * 180.02562 * 5 3 2 38 38 H 1.09004 * 109.47543 * 65.00269 * 6 3 2 39 39 H 1.08998 * 109.47419 * 304.99902 * 6 3 2 40 40 H 1.09004 * 109.46565 * 59.99760 * 7 6 3 41 41 H 1.08999 * 109.47246 * 300.00732 * 7 6 3 42 42 H 0.96995 * 120.00067 * 0.02562 * 10 8 7 43 43 H 1.08998 * 110.48353 * 25.32300 * 13 11 10 44 44 H 1.09001 * 110.48226 * 147.83344 * 13 11 10 45 45 H 1.08994 * 112.94718 * 170.31019 * 17 16 14 46 46 H 1.09007 * 113.76824 * 336.35268 * 18 17 16 47 47 H 1.09000 * 113.76868 * 107.74506 * 18 17 16 48 48 H 0.96999 * 119.99516 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.77051 * 221.14890 * 28 19 18 50 50 H 1.09000 * 113.76933 * 89.75655 * 28 19 18 51 51 H 1.09005 * 110.24344 * 258.01879 * 29 16 14 52 52 H 1.08991 * 110.24796 * 136.01803 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4442 0.1257 7 6 4.0647 2.8848 0.2511 8 6 5.5665 2.8865 0.3756 9 8 6.1770 1.8387 0.3646 10 7 6.2311 4.0525 0.4992 11 6 7.6912 4.0542 0.6196 12 1 8.1300 3.2483 0.0314 13 6 8.1243 3.9573 2.1009 14 6 8.3009 5.3970 2.5307 15 8 8.3634 5.7757 3.6811 16 7 8.3791 6.1952 1.4521 17 6 8.5429 7.6499 1.5103 18 6 9.4943 8.1224 2.6244 19 7 8.5046 9.1912 2.8753 20 6 8.5641 10.4433 3.4264 21 1 7.6707 11.0462 3.4948 22 6 9.7727 10.9377 3.8972 23 7 10.8615 10.2026 3.8143 24 14 9.8539 12.6455 4.6497 25 1 8.5029 13.2615 4.6258 26 1 10.3284 12.5460 6.0533 27 1 10.7949 13.4868 3.8675 28 6 7.4276 8.3683 2.2913 29 6 8.2790 5.4223 0.2084 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0700 1.5875 -2.1491 36 1 0.5490 2.1253 -1.3970 37 1 1.9991 3.1540 -1.3075 38 1 4.0030 0.9835 -0.7596 39 1 3.8571 0.8799 1.0113 40 1 3.6265 3.3456 1.1365 41 1 3.7724 3.4492 -0.6344 42 1 5.7427 4.8905 0.5083 43 1 7.3480 3.4743 2.6945 44 1 9.0645 3.4128 2.1885 45 1 8.7524 8.0932 0.5369 46 1 9.5939 7.4140 3.4469 47 1 10.4535 8.4875 2.2574 48 1 11.7061 10.5483 4.1430 49 1 6.7397 8.9295 1.6589 50 1 6.9188 7.7323 3.0157 51 1 9.2663 5.2909 -0.2345 52 1 7.6132 5.9231 -0.4943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108581078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:52 Heat of formation + Delta-G solvation = -54.348649 kcal Electronic energy + Delta-G solvation = -29391.286851 eV Core-core repulsion = 25390.997998 eV Total energy + Delta-G solvation = -4000.288852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92874 -40.60245 -38.96427 -38.07902 -37.49213 -35.08323 -34.13192 -33.20203 -31.64879 -29.65467 -29.15860 -28.35997 -26.64685 -26.60556 -25.24400 -23.84413 -22.42110 -22.06962 -21.27630 -20.68997 -19.72868 -18.80426 -18.13127 -17.81858 -17.67279 -16.91989 -16.68475 -16.40829 -15.97715 -15.80191 -15.62255 -15.32433 -15.08699 -14.79450 -14.52763 -14.42978 -14.24498 -14.16309 -13.95957 -13.47910 -13.42903 -13.26764 -13.14773 -12.85807 -12.78216 -12.76036 -12.68362 -12.56590 -12.45791 -12.43749 -12.00994 -11.85529 -11.80666 -11.52651 -11.42736 -11.35516 -11.25761 -11.07337 -10.80916 -10.63270 -10.08223 -9.55921 -8.94280 -7.93209 -5.27684 1.42704 1.45429 1.55517 1.60899 1.69189 1.98632 2.19597 2.48017 3.25215 3.36066 3.46912 3.48091 3.77604 3.79991 3.86278 3.88389 4.01516 4.20797 4.23984 4.26636 4.36215 4.47461 4.53076 4.60915 4.62808 4.68069 4.71399 4.76062 4.78490 4.79716 4.84554 4.91121 4.93680 4.95377 5.13619 5.16447 5.21797 5.22373 5.23275 5.27751 5.28985 5.37628 5.47607 5.49618 5.62101 5.62890 5.85841 5.89604 6.27144 6.56288 6.87809 7.25536 7.28757 7.57201 8.52594 9.24292 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.001959 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.628803 B =14289.165418 C =14980.946512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 H 0.074 0.926 5 C -0.151 4.151 6 C -0.095 4.095 7 C -0.138 4.138 8 C 0.514 3.486 9 O -0.578 6.578 10 N -0.716 5.716 11 C 0.146 3.854 12 H 0.129 0.871 13 C -0.156 4.156 14 C 0.502 3.498 15 O -0.576 6.576 16 N -0.605 5.605 17 C 0.137 3.863 18 C 0.146 3.854 19 N -0.635 5.635 20 C -0.235 4.235 21 H 0.087 0.913 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.984 3.016 25 H -0.262 1.262 26 H -0.297 1.297 27 H -0.286 1.286 28 C 0.116 3.884 29 C 0.097 3.903 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.414 0.586 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.138 0.862 46 H 0.020 0.980 47 H 0.040 0.960 48 H 0.248 0.752 49 H 0.072 0.928 50 H 0.023 0.977 51 H 0.109 0.891 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.074 -19.094 -16.665 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.108 4.108 4 H 0.092 0.908 5 C -0.208 4.208 6 C -0.133 4.133 7 C -0.178 4.178 8 C 0.303 3.697 9 O -0.457 6.457 10 N -0.368 5.368 11 C 0.040 3.960 12 H 0.147 0.853 13 C -0.197 4.197 14 C 0.291 3.709 15 O -0.456 6.456 16 N -0.338 5.338 17 C 0.034 3.966 18 C 0.019 3.981 19 N -0.362 5.362 20 C -0.363 4.363 21 H 0.105 0.895 22 C -0.264 4.264 23 N -0.604 5.604 24 Si 0.812 3.188 25 H -0.186 1.186 26 H -0.224 1.224 27 H -0.212 1.212 28 C -0.011 4.011 29 C -0.025 4.025 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.251 0.749 43 H 0.112 0.888 44 H 0.142 0.858 45 H 0.155 0.845 46 H 0.038 0.962 47 H 0.059 0.941 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.040 0.960 51 H 0.127 0.873 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.482 -19.284 -15.971 30.538 hybrid contribution 0.440 1.202 1.314 1.835 sum -17.042 -18.082 -14.657 28.848 Atomic orbital electron populations 1.21819 0.95355 1.01714 1.02115 1.21579 0.96309 0.96397 1.01687 1.21167 0.94090 0.96383 0.99176 0.90780 1.21949 1.01641 1.00778 0.96422 1.21327 0.95142 0.94825 1.02006 1.21803 0.89452 1.00281 1.06215 1.21272 0.91385 0.82846 0.74187 1.90700 1.70933 1.32699 1.51413 1.46062 1.06772 1.09734 1.74249 1.21777 0.81428 0.98705 0.94097 0.85287 1.22778 1.05391 0.92706 0.98850 1.21517 0.74989 0.89915 0.84496 1.90757 1.51896 1.80804 1.22131 1.48474 1.71264 1.06205 1.07898 1.23360 0.96233 0.77318 0.99727 1.22596 0.93805 0.87702 0.93960 1.46150 1.06591 1.12018 1.71452 1.19483 0.94922 0.89694 1.32212 0.89508 1.25737 0.95327 1.02806 1.02481 1.70058 0.99199 1.38276 1.52857 0.84932 0.78069 0.78807 0.77028 1.18571 1.22441 1.21247 1.22990 0.92590 0.91502 0.93971 1.22688 1.04000 0.89865 0.85982 0.92754 0.92027 0.92804 0.92234 0.92671 0.92920 0.92115 0.91604 0.92295 0.93049 0.87478 0.86206 0.74923 0.88832 0.85820 0.84454 0.96206 0.94149 0.94306 0.91009 0.95954 0.87338 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 71.98 0.70 -0.71 16 2 C -0.12 -1.32 5.40 30.60 0.17 -1.15 16 3 C -0.09 -0.89 2.39 -10.79 -0.03 -0.92 16 4 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 5 C -0.15 -1.20 8.70 71.98 0.63 -0.57 16 6 C -0.09 -1.23 3.97 30.59 0.12 -1.11 16 7 C -0.14 -1.43 5.45 29.85 0.16 -1.27 16 8 C 0.51 8.43 7.83 87.65 0.69 9.12 16 9 O -0.58 -14.13 15.67 -3.02 -0.05 -14.18 16 10 N -0.72 -9.65 5.14 -437.52 -2.25 -11.90 16 11 C 0.15 2.23 3.48 46.05 0.16 2.39 16 12 H 0.13 1.79 7.63 -2.39 -0.02 1.77 16 13 C -0.16 -3.51 6.59 30.59 0.20 -3.31 16 14 C 0.50 16.62 7.42 87.90 0.65 17.27 16 15 O -0.58 -26.81 14.61 -3.03 -0.04 -26.85 16 16 N -0.61 -16.66 3.15 -799.73 -2.52 -19.19 16 17 C 0.14 4.89 4.81 46.75 0.22 5.12 16 18 C 0.15 7.47 6.90 86.44 0.60 8.06 16 19 N -0.64 -34.42 3.70 -716.71 -2.65 -37.07 16 20 C -0.23 -13.74 10.70 84.03 0.90 -12.84 16 21 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 22 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 23 N -0.96 -60.54 11.39 21.65 0.25 -60.30 16 24 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 26 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 28 C 0.12 4.78 8.44 86.49 0.73 5.51 16 29 C 0.10 1.43 6.97 86.83 0.60 2.04 16 30 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.50 6.57 -2.39 -0.02 0.49 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.06 0.45 6.56 -2.39 -0.02 0.43 16 37 H 0.07 0.40 6.56 -2.39 -0.02 0.39 16 38 H 0.06 0.90 8.10 -2.38 -0.02 0.88 16 39 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 40 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.12 0.70 6.56 -2.39 -0.02 0.68 16 42 H 0.41 4.11 8.62 -92.71 -0.80 3.31 16 43 H 0.09 2.27 8.09 -2.39 -0.02 2.25 16 44 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.14 4.10 8.14 -2.39 -0.02 4.08 16 46 H 0.02 1.17 5.72 -2.38 -0.01 1.16 16 47 H 0.04 2.27 7.17 -2.39 -0.02 2.25 16 48 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 49 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 50 H 0.02 1.02 7.25 -2.39 -0.02 1.00 16 51 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 52 H 0.12 1.10 8.06 -2.39 -0.02 1.08 16 Total: -1.00 -85.33 409.45 1.83 -83.50 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.11 Total: 12.84 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 6.97 Total: 23.88 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -7.18 Total: -128.45 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.09 Total: -41.03 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -85.33 1.83 -83.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108581078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.153 kcal (2) G-P(sol) polarization free energy of solvation -85.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds