Wall clock time and date at job start Tue Mar 31 2020 20:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 H 1.09000 * 109.47334 * 54.99979 * 3 2 1 5 5 C 1.53007 * 109.47071 * 294.99898 * 3 2 1 6 6 C 1.53004 * 109.47094 * 175.00050 * 3 2 1 7 7 C 1.53005 * 109.47227 * 184.99841 * 6 3 2 8 8 C 1.50696 * 109.47208 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99877 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99946 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00077 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.85392 * 328.79501 * 11 10 8 13 13 C 1.54626 * 111.00103 * 92.60480 * 11 10 8 14 14 C 1.51291 * 104.25547 * 142.71383 * 13 11 10 15 15 O 1.21280 * 124.94051 * 164.01255 * 14 13 11 16 16 N 1.34415 * 110.11361 * 344.14971 * 14 13 11 17 17 C 1.46502 * 124.34954 * 179.43943 * 16 14 13 18 18 C 1.53495 * 114.20341 * 299.69621 * 17 16 14 19 19 N 1.47066 * 87.98658 * 87.71675 * 18 17 16 20 20 C 1.36937 * 136.06113 * 206.85859 * 19 18 17 21 21 H 1.07995 * 120.00001 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00320 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99557 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 60.00463 * 24 22 20 26 26 H 1.48506 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47174 * 300.00290 * 24 22 20 28 28 C 1.47067 * 87.88528 * 27.11900 * 19 18 17 29 29 C 1.46761 * 111.30076 * 359.16442 * 16 14 13 30 30 H 1.09002 * 109.46985 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46970 * 299.99996 * 1 2 3 32 32 H 1.09008 * 109.47154 * 60.00275 * 1 2 3 33 33 H 1.08996 * 109.46970 * 240.00004 * 2 1 3 34 34 H 1.08994 * 109.47160 * 119.99476 * 2 1 3 35 35 H 1.09005 * 109.47117 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47040 * 299.99689 * 5 3 2 37 37 H 1.08999 * 109.47137 * 60.00241 * 5 3 2 38 38 H 1.08996 * 109.46854 * 64.99935 * 6 3 2 39 39 H 1.08998 * 109.47246 * 304.99670 * 6 3 2 40 40 H 1.09000 * 109.46868 * 59.99554 * 7 6 3 41 41 H 1.08998 * 109.46868 * 300.00061 * 7 6 3 42 42 H 0.97004 * 119.99987 * 0.02562 * 10 8 7 43 43 H 1.08997 * 110.49066 * 261.61532 * 13 11 10 44 44 H 1.09002 * 110.48366 * 24.25720 * 13 11 10 45 45 H 1.08999 * 113.28231 * 166.63148 * 17 16 14 46 46 H 1.09005 * 113.46950 * 332.94241 * 18 17 16 47 47 H 1.08998 * 113.47096 * 202.49885 * 18 17 16 48 48 H 0.96999 * 119.99537 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.46858 * 87.65629 * 28 19 18 50 50 H 1.08993 * 113.47208 * 218.09965 * 28 19 18 51 51 H 1.09000 * 110.24341 * 136.28420 * 29 16 14 52 52 H 1.08999 * 110.25608 * 258.28598 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8851 0.2511 8 6 5.5663 2.8869 0.3755 9 8 6.1770 1.8390 0.3645 10 7 6.2309 4.0529 0.4980 11 6 7.6910 4.0548 0.6184 12 1 8.0396 3.1550 1.1253 13 6 8.3611 4.2043 -0.7670 14 6 9.5653 5.0821 -0.5057 15 8 10.5038 5.2170 -1.2619 16 7 9.4449 5.6885 0.6879 17 6 10.4412 6.5998 1.2563 18 6 11.8226 5.9664 1.4724 19 7 12.1549 6.3450 0.0907 20 6 12.9968 5.8797 -0.8839 21 1 13.6207 5.0192 -0.6928 22 6 13.0476 6.5134 -2.1179 23 7 12.2869 7.5619 -2.3510 24 14 14.1956 5.8782 -3.4476 25 1 13.8404 4.4750 -3.7793 26 1 14.0626 6.7232 -4.6615 27 1 15.5969 5.9317 -2.9587 28 6 11.1899 7.4474 0.2184 29 6 8.1842 5.3253 1.3457 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.9989 3.1541 -1.3076 36 1 2.0699 1.5875 -2.1492 37 1 0.5489 2.1252 -1.3970 38 1 4.0029 0.9836 -0.7596 39 1 3.8571 0.8801 1.0113 40 1 3.6263 3.3458 1.1364 41 1 3.7722 3.4493 -0.6345 42 1 5.7425 4.8910 0.5064 43 1 8.6704 3.2311 -1.1483 44 1 7.6834 4.6917 -1.4679 45 1 10.0700 7.1650 2.1112 46 1 11.7861 4.8885 1.6301 47 1 12.4245 6.4823 2.2205 48 1 12.3227 8.0050 -3.2132 49 1 11.6232 8.3579 0.6327 50 1 10.6153 7.6288 -0.6898 51 1 8.3568 5.1130 2.4008 52 1 7.4562 6.1292 1.2361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108581079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:56 Heat of formation + Delta-G solvation = -2.871175 kcal Electronic energy + Delta-G solvation = -29782.123313 eV Core-core repulsion = 25784.066692 eV Total energy + Delta-G solvation = -3998.056622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.49065 -39.54506 -37.60598 -37.07290 -35.81307 -33.84161 -32.65047 -31.84895 -30.11543 -28.99887 -27.35462 -27.00443 -25.98529 -24.47216 -23.41439 -23.04037 -21.39817 -20.65153 -20.28002 -20.18156 -17.73795 -17.34160 -16.64934 -16.55166 -16.07931 -15.70880 -15.33347 -15.17474 -14.82744 -14.52131 -14.27216 -13.88157 -13.75262 -13.61428 -13.51294 -13.33587 -13.17374 -12.92997 -12.72627 -12.36241 -12.32176 -12.21494 -12.05220 -12.02205 -11.66980 -11.29259 -11.25922 -11.11425 -10.93488 -10.88555 -10.85305 -10.78237 -10.62156 -10.53086 -9.99377 -9.90437 -9.78313 -9.36064 -9.19608 -8.69265 -8.30291 -7.81448 -6.52784 -5.44201 -2.71452 2.47970 2.88445 3.55639 3.56809 3.60769 3.62379 3.65259 4.31426 4.39017 4.49806 4.53071 4.69247 4.71369 4.79434 4.86303 4.97063 5.03311 5.04335 5.16500 5.18852 5.22232 5.28639 5.39261 5.40990 5.49557 5.54492 5.57848 5.65850 5.67786 5.72353 5.73064 5.75309 5.79660 5.90074 5.93598 6.01140 6.06428 6.07755 6.11505 6.33982 6.39634 6.55566 6.62412 6.97455 7.29547 7.35747 7.58164 7.81177 7.96769 8.06667 8.26856 9.24047 9.32036 10.04852 10.92615 11.75354 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002109 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.188729 B =13271.965079 C =13972.343886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.153 4.153 6 C -0.100 4.100 7 C -0.142 4.142 8 C 0.513 3.487 9 O -0.537 6.537 10 N -0.722 5.722 11 C 0.134 3.866 12 H 0.108 0.892 13 C -0.166 4.166 14 C 0.486 3.514 15 O -0.413 6.413 16 N -0.605 5.605 17 C 0.097 3.903 18 C 0.100 3.900 19 N -0.585 5.585 20 C -0.183 4.183 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.918 5.918 24 Si 0.902 3.098 25 H -0.288 1.288 26 H -0.294 1.294 27 H -0.291 1.291 28 C 0.150 3.850 29 C 0.109 3.891 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.401 0.599 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.245 0.755 49 H 0.030 0.970 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.736 -7.714 9.646 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.210 4.210 6 C -0.138 4.138 7 C -0.181 4.181 8 C 0.300 3.700 9 O -0.413 6.413 10 N -0.374 5.374 11 C 0.028 3.972 12 H 0.126 0.874 13 C -0.208 4.208 14 C 0.269 3.731 15 O -0.277 6.277 16 N -0.344 5.344 17 C -0.007 4.007 18 C -0.028 4.028 19 N -0.311 5.311 20 C -0.311 4.311 21 H 0.087 0.913 22 C -0.192 4.192 23 N -0.566 5.566 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.218 1.218 28 C 0.023 3.977 29 C -0.016 4.016 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.236 0.764 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.102 0.898 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.047 0.953 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.509 -8.386 8.838 27.370 hybrid contribution 0.317 0.203 -0.646 0.747 sum -24.191 -8.183 8.192 26.820 Atomic orbital electron populations 1.21828 0.95984 1.01499 1.01815 1.21567 0.95737 0.96299 1.02222 1.21203 0.95176 0.96347 0.98433 0.91185 1.21965 1.01283 1.00490 0.97250 1.21408 0.94201 0.94632 1.03575 1.21756 0.91627 1.00410 1.04351 1.20788 0.90254 0.83468 0.75515 1.90730 1.70010 1.31425 1.49119 1.46008 1.07041 1.09151 1.75211 1.21780 0.79606 0.99400 0.96392 0.87380 1.22830 0.98124 1.02202 0.97690 1.20651 0.87999 0.81884 0.82576 1.91227 1.31105 1.58812 1.46562 1.47717 1.18796 1.47939 1.19904 1.22675 0.87993 0.92597 0.97460 1.22874 0.92161 0.97801 0.89927 1.45169 1.47685 1.31086 1.07138 1.18489 1.13216 1.08797 0.90577 0.91256 1.24505 0.99702 0.98046 0.96942 1.69775 1.42100 1.22399 1.22365 0.86354 0.80234 0.78008 0.82013 1.21472 1.21961 1.21783 1.22327 0.89217 0.90396 0.95710 1.22001 0.87117 0.95215 0.97265 0.92939 0.92852 0.92518 0.91902 0.91940 0.92530 0.92575 0.92543 0.91071 0.91165 0.88910 0.88641 0.76373 0.88594 0.88672 0.89770 0.94593 0.94499 0.94465 0.95297 0.90510 0.90547 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.67 37.16 0.36 -0.44 16 2 C -0.12 -0.72 5.40 -26.73 -0.14 -0.86 16 3 C -0.09 -0.54 2.39 -90.61 -0.22 -0.76 16 4 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 5 C -0.15 -0.83 8.70 37.16 0.32 -0.51 16 6 C -0.10 -0.75 3.97 -26.73 -0.11 -0.85 16 7 C -0.14 -0.92 5.46 -27.88 -0.15 -1.07 16 8 C 0.51 5.22 7.83 -10.99 -0.09 5.13 16 9 O -0.54 -7.87 15.62 5.55 0.09 -7.78 16 10 N -0.72 -6.37 5.15 -52.23 -0.27 -6.64 16 11 C 0.13 1.58 3.53 -66.30 -0.23 1.34 16 12 H 0.11 1.43 7.54 -51.93 -0.39 1.03 16 13 C -0.17 -2.56 6.59 -26.74 -0.18 -2.73 16 14 C 0.49 9.93 7.56 -10.86 -0.08 9.85 16 15 O -0.41 -11.08 12.47 5.56 0.07 -11.01 16 16 N -0.61 -10.37 3.18 -164.62 -0.52 -10.89 16 17 C 0.10 1.80 5.12 -67.81 -0.35 1.45 16 18 C 0.10 2.12 8.34 -8.51 -0.07 2.05 16 19 N -0.59 -15.65 2.29 -184.78 -0.42 -16.07 16 20 C -0.18 -5.50 8.93 -15.06 -0.13 -5.63 16 21 H 0.07 2.07 7.83 -52.49 -0.41 1.65 16 22 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 23 N -0.92 -28.84 11.51 55.49 0.64 -28.20 16 24 Si 0.90 24.13 29.55 -169.99 -5.02 19.11 16 25 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 26 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 28 C 0.15 3.62 6.41 -8.51 -0.05 3.56 16 29 C 0.11 1.24 7.08 -3.12 -0.02 1.22 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.28 6.57 -51.92 -0.34 -0.06 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.28 6.56 -51.93 -0.34 -0.06 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.28 6.56 -51.93 -0.34 -0.06 16 38 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.50 6.56 -51.93 -0.34 0.16 16 42 H 0.40 2.32 8.43 -40.82 -0.34 1.98 16 43 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.08 2.12 6.58 -51.93 -0.34 1.78 16 51 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.06 0.60 7.80 -51.93 -0.40 0.19 16 LS Contribution 406.00 15.07 6.12 6.12 Total: -1.00 -37.97 406.00 -9.71 -47.67 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -9.15 Total: -4.09 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -1.23 Total: 11.78 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.58 Total: -61.80 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.16 Total: -18.79 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.02 Total: 19.11 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.97 -9.71 -47.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108581079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.803 kcal (2) G-P(sol) polarization free energy of solvation -37.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds